Console Output
Started by GitHub push by Philipduerholt
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
> git --version # timeout=10
using GIT_ASKPASS to set credentials
> git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
> git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
> git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 6e016d29abd36e4a8bef8b1ae87f9c3a8215cb5d (refs/remotes/origin/testing)
> git config core.sparsecheckout # timeout=10
> git checkout -f 6e016d29abd36e4a8bef8b1ae87f9c3a8215cb5d
> git rev-list 627b6f15a915d1db4eae6fb0d117796549cc1ddd # timeout=10
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda7477397215328960662.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Requirement already up-to-date: nose in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 2))
Requirement already up-to-date: nosexcover in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 3))
Requirement already up-to-date: jupyter in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 4))
Requirement already up-to-date: pandas>=0.19.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: regex>=2017.01.14 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: gensim>=0.13.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: matplotlib==1.5.3 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: numpy>=1.3 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: scipy>=0.7 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: werkzeug>=0.11.15 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: flask>=0.11.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: pyLDAvis>=2.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: coverage>=3.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nosexcover->-r requirements-dev.txt (line 3))
Requirement already up-to-date: nbconvert in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipywidgets in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: notebook in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: qtconsole in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jupyter-console in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipykernel in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: python-dateutil>=2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: pytz>=2011k in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: smart-open>=1.2.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: cycler in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: Jinja2>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: click>=2.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: itsdangerous>=0.21 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: funcy in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: pytest in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: numexpr in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: future in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: joblib>=0.8.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: nbformat in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pandocfilters>=1.4.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: bleach in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: entrypoints>=0.2.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jupyter-core in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pygments in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: traitlets>=4.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: mistune!=0.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: testpath in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipython>=4.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: widgetsnbextension>=1.2.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: terminado>=0.3.3; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jupyter-client in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: tornado>=4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: prompt-toolkit<2.0.0,>=1.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: requests in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: boto>=2.32 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: bz2file in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: py>=1.4.29 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: decorator in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from traitlets>=4.2->nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pexpect; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ptyprocess in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pyzmq>=13 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-client->notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Installing collected packages: dariah-topics
Found existing installation: dariah-topics 0.2.0.dev0
Uninstalling dariah-topics-0.2.0.dev0:
Successfully uninstalled dariah-topics-0.2.0.dev0
Running setup.py develop for dariah-topics
Successfully installed dariah-topics
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing top-level names to dariah_topics.egg-info/top_level.txt
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing dariah_topics.egg-info/PKG-INFO
writing requirements to dariah_topics.egg-info/requires.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:333: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0'
normalized_version,
warning: sdist: standard file not found: should have one of README, README.rst, README.txt
running check
warning: check: missing required meta-data: url
creating dariah_topics-0.2.0.dev0
creating dariah_topics-0.2.0.dev0/dariah_topics
creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info
creating dariah_topics-0.2.0.dev0/test
copying files to dariah_topics-0.2.0.dev0...
copying setup.cfg -> dariah_topics-0.2.0.dev0
copying setup.py -> dariah_topics-0.2.0.dev0
copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying test/testing.py -> dariah_topics-0.2.0.dev0/test
Writing dariah_topics-0.2.0.dev0/setup.cfg
Creating tar archive
removing 'dariah_topics-0.2.0.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
copying dariah_topics/mallet.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL
+ nosetests
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
.[NbConvertApp] Converting notebook IntegrationTest_v01.ipynb to html
[NbConvertApp] Executing notebook with kernel: python3
Traceback (most recent call last):
File "/usr/lib/python3.5/runpy.py", line 183, in _run_module_as_main
mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
File "/usr/lib/python3.5/runpy.py", line 142, in _get_module_details
return _get_module_details(pkg_main_name, error)
File "/usr/lib/python3.5/runpy.py", line 109, in _get_module_details
__import__(pkg_name)
File "/usr/lib/python3/dist-packages/ipykernel/__init__.py", line 2, in <module>
from .connect import *
File "/usr/lib/python3/dist-packages/ipykernel/connect.py", line 14, in <module>
from IPython.paths import get_ipython_dir
ImportError: No module named 'IPython.paths'
Traceback (most recent call last):
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/jupyter-nbconvert", line 11, in <module>
sys.exit(main())
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_core/application.py", line 267, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/traitlets/config/application.py", line 658, in launch_instance
app.start()
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 305, in start
self.convert_notebooks()
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 473, in convert_notebooks
self.convert_single_notebook(notebook_filename)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 444, in convert_single_notebook
output, resources = self.export_single_notebook(notebook_filename, resources, input_buffer=input_buffer)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 373, in export_single_notebook
output, resources = self.exporter.from_filename(notebook_filename, resources=resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 171, in from_filename
return self.from_file(f, resources=resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 189, in from_file
return self.from_notebook_node(nbformat.read(file_stream, as_version=4), resources=resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/html.py", line 69, in from_notebook_node
return super(HTMLExporter, self).from_notebook_node(nb, resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/templateexporter.py", line 236, in from_notebook_node
nb_copy, resources = super(TemplateExporter, self).from_notebook_node(nb, resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 131, in from_notebook_node
nb_copy, resources = self._preprocess(nb_copy, resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 308, in _preprocess
nbc, resc = preprocessor(nbc, resc)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 47, in __call__
return self.preprocess(nb,resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 207, in preprocess
cwd=path)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 192, in start_new_kernel
kc.wait_for_ready(timeout=startup_timeout)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_client/blocking/client.py", line 59, in wait_for_ready
raise RuntimeError('Kernel died before replying to kernel_info')
RuntimeError: Kernel died before replying to kernel_info
E..E
======================================================================
ERROR: Tries to run the integration test notebook using jupyter.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 11, in jupyter_integration_test
"IntegrationTest_v01.ipynb"])
File "/usr/lib/python3.5/subprocess.py", line 271, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', 'IntegrationTest_v01.ipynb']' returned non-zero exit status 1
======================================================================
ERROR: Failure: ImportError (No module named 'preprocessing')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/failure.py", line 39, in runTest
raise self.exc_val.with_traceback(self.tb)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/imp.py", line 234, in load_module
return load_source(name, filename, file)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/imp.py", line 172, in load_source
module = _load(spec)
File "<frozen importlib._bootstrap>", line 693, in _load
File "<frozen importlib._bootstrap>", line 673, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 673, in exec_module
File "<frozen importlib._bootstrap>", line 222, in _call_with_frames_removed
File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/testing.py", line 1, in <module>
import preprocessing
ImportError: No module named 'preprocessing'
Name Stmts Miss Cover
-----------------------------------------------------
dariah_topics.py 0 0 100%
dariah_topics/mallet.py 77 59 23%
dariah_topics/model_creation.py 60 43 28%
dariah_topics/preprocessing.py 122 73 40%
dariah_topics/visualization.py 113 89 21%
-----------------------------------------------------
TOTAL 372 264 29%
----------------------------------------------------------------------
Ran 5 tests in 4.102s
FAILED (errors=2)
Build step 'Virtualenv Builder' marked build as failure
Recording test results
Skipping Cobertura coverage report as build was not UNSTABLE or better ...
Sending e-mails to: noreply@github.com cyberpillip@gmail.com sina.bock@stud-mail.uni-wuerzburg.de
[Set GitHub commit status (universal)] PENDING on repos [GHRepository@d6b2bec[description=<null>,homepage=<null>,name=Topics,license=<null>,fork=true,size=21173,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:6e016d2) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/6e016d29abd36e4a8bef8b1ae87f9c3a8215cb5d
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: FAILURE
[BFA] Scanning build for known causes...
[BFA] Found failure cause(s):
[BFA] Jupyter Setup Problem
[BFA] Done. 0s
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