Started by GitHub push by severinsimmler Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 0e7fb823c1d7b25c135f324fab6174557f85b177 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 0e7fb823c1d7b25c135f324fab6174557f85b177 > git rev-list 544808f488d6e0b81dd44556149c05a32b31d5cd # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda1743202118157450411.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pandas-0.20.1-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting matplotlib==1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached matplotlib-1.5.3-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached numpy-1.12.1-cp35-cp35m-manylinux1_x86_64.whl Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached scipy-0.19.0-cp35-cp35m-manylinux1_x86_64.whl Collecting werkzeug>=0.11.15 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Werkzeug-0.12.1-py2.py3-none-any.whl Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Flask-0.12.1-py2.py3-none-any.whl Collecting wikipedia>=1.4.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting lxml>=3.6.4 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached lxml-3.7.3-cp35-cp35m-manylinux1_x86_64.whl Collecting pyLDAvis>=2.0.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.4-cp35-cp35m-manylinux1_x86_64.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Using cached notebook-5.0.0-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_console-5.1.0-py2.py3-none-any.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipywidgets-6.0.0-py2.py3-none-any.whl Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipykernel-4.6.1-py3-none-any.whl Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Using cached nbconvert-5.1.1-py2.py3-none-any.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Using cached qtconsole-4.3.0-py2.py3-none-any.whl Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.0-py2.py3-none-any.whl Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pytz-2017.2-py2.py3-none-any.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting cycler (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting Jinja2>=2.4 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Jinja2-2.9.6-py2.py3-none-any.whl Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting requests<3.0.0,>=2.0.0 (from wikipedia>=1.4.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached requests-2.14.1-py2.py3-none-any.whl Collecting beautifulsoup4 (from wikipedia>=1.4.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached beautifulsoup4-4.6.0-py3-none-any.whl Collecting future (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting funcy (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting numexpr (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached numexpr-2.6.2-cp35-cp35m-manylinux1_x86_64.whl Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting pytest (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pytest-3.0.7-py2.py3-none-any.whl Collecting joblib>=0.8.4 (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached joblib-0.11-py2.py3-none-any.whl Collecting nbformat (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached nbformat-4.3.0-py2.py3-none-any.whl Collecting tornado>=4 (from notebook->jupyter->-r requirements-dev.txt (line 4)) Collecting traitlets>=4.2.1 (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting jupyter-client (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_client-5.0.1-py2.py3-none-any.whl Collecting jupyter-core (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_core-4.3.0-py2.py3-none-any.whl Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached prompt_toolkit-1.0.14-py3-none-any.whl Collecting pygments (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting ipython (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython-6.0.0-py3-none-any.whl Collecting widgetsnbextension~=2.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached widgetsnbextension-2.0.0-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached testpath-0.3-py2.py3-none-any.whl Collecting mistune!=0.6 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached mistune-0.7.4-py2.py3-none-any.whl Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached bleach-2.0.0-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached entrypoints-0.2.2-py2.py3-none-any.whl Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached boto-2.46.1-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting py>=1.4.29 (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached py-1.4.33-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting decorator (from traitlets>=4.2.1->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached decorator-4.0.11-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ptyprocess-0.5.1-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached jedi-0.10.2-py2.py3-none-any.whl Collecting pickleshare (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Collecting pexpect; sys_platform != "win32" (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached pexpect-4.2.1-py2.py3-none-any.whl Collecting html5lib>=0.99999999 (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached html5lib-0.999999999-py2.py3-none-any.whl Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting webencodings (from html5lib>=0.99999999->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Installing collected packages: nose, coverage, nosexcover, ipython-genutils, decorator, traitlets, jupyter-core, jsonschema, nbformat, tornado, MarkupSafe, Jinja2, pyzmq, python-dateutil, jupyter-client, pygments, jedi, wcwidth, prompt-toolkit, pickleshare, simplegeneric, ptyprocess, pexpect, ipython, ipykernel, terminado, pandocfilters, testpath, mistune, webencodings, html5lib, bleach, entrypoints, nbconvert, notebook, jupyter-console, widgetsnbextension, ipywidgets, qtconsole, jupyter, numpy, pytz, pandas, regex, scipy, bz2file, requests, boto, smart-open, gensim, cycler, matplotlib, werkzeug, click, itsdangerous, flask, beautifulsoup4, wikipedia, lxml, future, funcy, numexpr, py, pytest, joblib, pyLDAvis, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.9.6 MarkupSafe-1.0 beautifulsoup4-4.6.0 bleach-2.0.0 boto-2.46.1 bz2file-0.98 click-6.7 coverage-4.4 cycler-0.10.0 dariah-topics decorator-4.0.11 entrypoints-0.2.2 flask-0.12.1 funcy-1.7.3 future-0.16.0 gensim-2.0.0 html5lib-0.999999999 ipykernel-4.6.1 ipython-6.0.0 ipython-genutils-0.2.0 ipywidgets-6.0.0 itsdangerous-0.24 jedi-0.10.2 joblib-0.11 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.0.1 jupyter-console-5.1.0 jupyter-core-4.3.0 lxml-3.7.3 matplotlib-1.5.3 mistune-0.7.4 nbconvert-5.1.1 nbformat-4.3.0 nose-1.3.7 nosexcover-1.0.11 notebook-5.0.0 numexpr-2.6.2 numpy-1.12.1 pandas-0.20.1 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.14 ptyprocess-0.5.1 py-1.4.33 pyLDAvis-2.1.1 pygments-2.2.0 pytest-3.0.7 python-dateutil-2.6.0 pytz-2017.2 pyzmq-16.0.2 qtconsole-4.3.0 regex-2017.4.29 requests-2.14.1 scipy-0.19.0 simplegeneric-0.8.1 smart-open-1.5.2 terminado-0.6 testpath-0.3 tornado-4.5.1 traitlets-4.3.2 wcwidth-0.1.7 webencodings-0.5.1 werkzeug-0.12.1 widgetsnbextension-2.0.0 wikipedia-1.4.0 + ./setup.py sdist bdist_wheel running sdist running egg_info writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing dariah_topics.egg-info/PKG-INFO writing top-level names to dariah_topics.egg-info/top_level.txt writing requirements to dariah_topics.egg-info/requires.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:334: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0' normalized_version, warning: sdist: standard file not found: should have one of README, README.rst, README.txt running check warning: check: missing required meta-data: url creating dariah_topics-0.2.0.dev0 creating dariah_topics-0.2.0.dev0/dariah_topics creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info creating dariah_topics-0.2.0.dev0/test copying files to dariah_topics-0.2.0.dev0... copying setup.cfg -> dariah_topics-0.2.0.dev0 copying setup.py -> dariah_topics-0.2.0.dev0 copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.2.0.dev0/test Writing dariah_topics-0.2.0.dev0/setup.cfg Creating tar archive removing 'dariah_topics-0.2.0.dev0' (and everything under it) running bdist_wheel running build running build_py copying dariah_topics/mallet.py -> build/lib/dariah_topics installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL + nosetests E..............F.....E..........E........... ====================================================================== ERROR: Failure: SyntaxError (invalid syntax (mallet.py, line 40)) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 134, in run self.runTest(result) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 152, in runTest test(result) File "/usr/lib/python3.5/unittest/case.py", line 649, in __call__ return self.run(*args, **kwds) File "/usr/lib/python3.5/unittest/case.py", line 609, in run self._feedErrorsToResult(result, outcome.errors) File "/usr/lib/python3.5/unittest/case.py", line 539, in _feedErrorsToResult result.addError(test, exc_info) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/proxy.py", line 132, in addError self.result.addError(self.test, self._prepareErr(err)) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/result.py", line 61, in addError exc_info = self._exc_info_to_string(err, test) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/result.py", line 187, in _exc_info_to_string return _TextTestResult._exc_info_to_string(self, err, test) File "/usr/lib/python3.5/unittest/result.py", line 186, in _exc_info_to_string exctype, value, tb, limit=length, capture_locals=self.tb_locals) File "/usr/lib/python3.5/traceback.py", line 481, in __init__ self.filename = exc_value.filename AttributeError: 'SyntaxError' object has no attribute 'filename' -------------------- >> begin captured logging << -------------------- gensim.models.doc2vec: DEBUG: Fast version of gensim.models.doc2vec is being used summa.preprocessing.cleaner: INFO: 'pattern' package not found; tag filters are not available for English --------------------- >> end captured logging << --------------------- ====================================================================== ERROR: Failure: ImportError (No module named 'wordcloud') ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/imp.py", line 234, in load_module return load_source(name, filename, file) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/imp.py", line 172, in load_source module = _load(spec) File "<frozen importlib._bootstrap>", line 693, in _load File "<frozen importlib._bootstrap>", line 673, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 673, in exec_module File "<frozen importlib._bootstrap>", line 222, in _call_with_frames_removed File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py", line 24, in <module> from wordcloud import WordCloud ImportError: No module named 'wordcloud' ====================================================================== ERROR: Integration test notebook (via Jupyter) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 20, in jupyter_integration_test stderr=STDOUT, universal_newlines=True) File "/usr/lib/python3.5/subprocess.py", line 316, in check_output **kwargs).stdout File "/usr/lib/python3.5/subprocess.py", line 398, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 255 -------------------- >> begin captured logging << -------------------- root: ERROR: This application is used to convert notebook files (*.ipynb) to various other formats. WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES. Options ------- Arguments that take values are actually convenience aliases to full Configurables, whose aliases are listed on the help line. For more information on full configurables, see '--help-all'. --allow-errors Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too. -y Answer yes to any questions instead of prompting. --execute Execute the notebook prior to export. --debug set log level to logging.DEBUG (maximize logging output) --inplace Run nbconvert in place, overwriting the existing notebook (only relevant when converting to notebook format) --stdin read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*' --generate-config generate default config file --stdout Write notebook output to stdout instead of files. --to=<Unicode> (NbConvertApp.export_format) Default: 'html' The export format to be used, either one of the built-in formats, or a dotted object name that represents the import path for an `Exporter` class --log-level=<Enum> (Application.log_level) Default: 30 Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL') Set the log level by value or name. --writer=<DottedObjectName> (NbConvertApp.writer_class) Default: 'FilesWriter' Writer class used to write the results of the conversion --reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix) Default: '' The URL prefix for reveal.js. This can be a a relative URL for a local copy of reveal.js, or point to a CDN. For speaker notes to work, a local reveal.js prefix must be used. --nbformat=<Enum> (NotebookExporter.nbformat_version) Default: 4 Choices: [1, 2, 3, 4] The nbformat version to write. Use this to downgrade notebooks. --template=<Unicode> (TemplateExporter.template_file) Default: '' Name of the template file to use --config=<Unicode> (JupyterApp.config_file) Default: '' Full path of a config file. --output=<Unicode> (NbConvertApp.output_base) Default: '' overwrite base name use for output files. can only be used when converting one notebook at a time. --post=<DottedOrNone> (NbConvertApp.postprocessor_class) Default: '' PostProcessor class used to write the results of the conversion --output-dir=<Unicode> (FilesWriter.build_directory) Default: '' Directory to write output(s) to. Defaults to output to the directory of each notebook. To recover previous default behaviour (outputting to the current working directory) use . as the flag value. To see all available configurables, use `--help-all` Examples -------- The simplest way to use nbconvert is > jupyter nbconvert mynotebook.ipynb which will convert mynotebook.ipynb to the default format (probably HTML). You can specify the export format with `--to`. Options include ['asciidoc', 'custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides'] > jupyter nbconvert --to latex mynotebook.ipynb Both HTML and LaTeX support multiple output templates. LaTeX includes 'base', 'article' and 'report'. HTML includes 'basic' and 'full'. You can specify the flavor of the format used. > jupyter nbconvert --to html --template basic mynotebook.ipynb You can also pipe the output to stdout, rather than a file > jupyter nbconvert mynotebook.ipynb --stdout PDF is generated via latex > jupyter nbconvert mynotebook.ipynb --to pdf You can get (and serve) a Reveal.js-powered slideshow > jupyter nbconvert myslides.ipynb --to slides --post serve Multiple notebooks can be given at the command line in a couple of different ways: > jupyter nbconvert notebook*.ipynb > jupyter nbconvert notebook1.ipynb notebook2.ipynb or you can specify the notebooks list in a config file, containing:: c.NbConvertApp.notebooks = ["my_notebook.ipynb"] > jupyter nbconvert --config mycfg.py --------------------- >> end captured logging << --------------------- ====================================================================== FAIL: Doctest: dariah_topics.preprocessing.remove_features ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.5/doctest.py", line 2190, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for dariah_topics.preprocessing.remove_features File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py", line 669, in remove_features ---------------------------------------------------------------------- File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py", line 699, in dariah_topics.preprocessing.remove_features Failed example: len(remove_features(sparse_bow, id_types, features)) Expected: 2 Got: 3 -------------------- >> begin captured logging << -------------------- preprocessing: INFO: Removing features ... preprocessing: DEBUG: 5 features removed. --------------------- >> end captured logging << --------------------- Name Stmts Miss Cover ----------------------------------------------------- dariah_topics/__init__.py 0 0 100% dariah_topics/doclist.py 89 14 84% dariah_topics/evaluation.py 96 59 39% dariah_topics/model_creation.py 60 43 28% dariah_topics/preprocessing.py 201 6 97% ----------------------------------------------------- TOTAL 446 122 73% ---------------------------------------------------------------------- Ran 44 tests in 1.076s FAILED (errors=3, failures=1) Build step 'Virtualenv Builder' marked build as failure Recording test results Skipping Cobertura coverage report as build was not UNSTABLE or better ... [Set GitHub commit status (universal)] ERROR on repos [GHRepository@5c4c4af0[description=A python library for topic modeling.,homepage=,name=Topics,license=<null>,fork=true,size=101867,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:0e7fb82) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/0e7fb823c1d7b25c135f324fab6174557f85b177 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: FAILURE