Started by GitHub push by severinsimmler
Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
 > git --version # timeout=10
using GIT_ASKPASS to set credentials 
 > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 62b18e2fab0f19b449738df357da62c0de025407 (refs/remotes/origin/testing)
Commit message: "Make demonstrator work again"
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 62b18e2fab0f19b449738df357da62c0de025407
 > git rev-list 8ee2bbe4b61d6b267c092c36415b88d08ffd604f # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda3924990205254140796.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
  dariah-topics 0.2.0.dev0 does not provide the extra 'evaluation'
Collecting nose (from -r requirements-dev.txt (line 2))
  Using cached nose-1.3.7-py3-none-any.whl
Collecting nosexcover (from -r requirements-dev.txt (line 3))
  Using cached nosexcover-1.0.11-py2.py3-none-any.whl
Collecting jupyter (from -r requirements-dev.txt (line 4))
  Using cached jupyter-1.0.0-py2.py3-none-any.whl
Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached pandas-0.20.3-cp35-cp35m-manylinux1_x86_64.whl
Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Downloading regex-2017.07.28.tar.gz (607kB)
Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting lda>=1.0.5 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl
Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached numpy-1.13.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached scipy-0.19.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting lxml>=3.6.4 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached lxml-3.8.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached Flask-0.12.2-py2.py3-none-any.whl
Collecting matplotlib>=1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached matplotlib-2.0.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting bokeh>=0.12.6 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3))
  Using cached coverage-4.4.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4))
  Using cached nbconvert-5.2.1-py2.py3-none-any.whl
Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4))
  Using cached ipywidgets-6.0.0-py2.py3-none-any.whl
Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4))
  Using cached ipykernel-4.6.1-py3-none-any.whl
Collecting notebook (from jupyter->-r requirements-dev.txt (line 4))
  Using cached notebook-5.0.0-py2.py3-none-any.whl
Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4))
  Using cached qtconsole-4.3.0-py2.py3-none-any.whl
Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4))
  Using cached jupyter_console-5.1.0-py2.py3-none-any.whl
Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached python_dateutil-2.6.1-py2.py3-none-any.whl
Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached pytz-2017.2-py2.py3-none-any.whl
Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting six>=1.5.0 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached six-1.10.0-py2.py3-none-any.whl
Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached pbr-3.1.1-py2.py3-none-any.whl
Collecting Jinja2>=2.4 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached Jinja2-2.9.6-py2.py3-none-any.whl
Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached Werkzeug-0.12.2-py2.py3-none-any.whl
Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached click-6.7-py2.py3-none-any.whl
Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached cycler-0.10.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.0,!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 (from matplotlib>=1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached pyparsing-2.2.0-py2.py3-none-any.whl
Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting bkcharts>=0.2 (from bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting requests>=1.2.3 (from bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached requests-2.18.2-py2.py3-none-any.whl
Collecting nbformat (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached nbformat-4.3.0-py2.py3-none-any.whl
Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached testpath-0.3.1-py2.py3-none-any.whl
Collecting mistune!=0.6 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached mistune-0.7.4-py2.py3-none-any.whl
Collecting pygments (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached Pygments-2.2.0-py2.py3-none-any.whl
Collecting traitlets>=4.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached traitlets-4.3.2-py2.py3-none-any.whl
Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached entrypoints-0.2.3-py2.py3-none-any.whl
Collecting jupyter-core (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached jupyter_core-4.3.0-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached bleach-2.0.0-py2.py3-none-any.whl
Collecting widgetsnbextension~=2.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
  Using cached widgetsnbextension-2.0.0-py2.py3-none-any.whl
Collecting ipython>=4.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
  Using cached ipython-6.1.0-py3-none-any.whl
Collecting jupyter-client (from ipykernel->jupyter->-r requirements-dev.txt (line 4))
  Using cached jupyter_client-5.1.0-py2.py3-none-any.whl
Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4))
  Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl
Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4))
Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4))
  Downloading prompt_toolkit-1.0.15-py3-none-any.whl (247kB)
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached boto-2.48.0-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting urllib3<1.23,>=1.21.1 (from requests>=1.2.3->bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached urllib3-1.22-py2.py3-none-any.whl
Collecting certifi>=2017.4.17 (from requests>=1.2.3->bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Downloading certifi-2017.7.27.1-py2.py3-none-any.whl (349kB)
Collecting idna<2.6,>=2.5 (from requests>=1.2.3->bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached idna-2.5-py2.py3-none-any.whl
Collecting chardet<3.1.0,>=3.0.2 (from requests>=1.2.3->bokeh>=0.12.6->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
  Using cached chardet-3.0.4-py2.py3-none-any.whl
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached jsonschema-2.6.0-py2.py3-none-any.whl
Collecting decorator (from traitlets>=4.2->nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached decorator-4.1.2-py2.py3-none-any.whl
Collecting html5lib>=0.99999999 (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached html5lib-0.999999999-py2.py3-none-any.whl
Collecting jedi>=0.10 (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
  Using cached jedi-0.10.2-py2.py3-none-any.whl
Requirement already up-to-date: setuptools>=18.5 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
  Using cached pexpect-4.2.1-py2.py3-none-any.whl
Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Collecting pickleshare (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
  Using cached pickleshare-0.7.4-py2.py3-none-any.whl
Collecting pyzmq>=13 (from jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4))
  Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4))
  Using cached ptyprocess-0.5.2-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
  Using cached wcwidth-0.1.7-py2.py3-none-any.whl
Collecting webencodings (from html5lib>=0.99999999->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4))
  Using cached webencodings-0.5.1-py2.py3-none-any.whl
Building wheels for collected packages: regex
  Running setup.py bdist_wheel for regex: started
  Running setup.py bdist_wheel for regex: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/59/6f/80/c0f0aebad616d785f0178de88f9ae957991672856038d75a6c
Successfully built regex
Installing collected packages: nose, coverage, nosexcover, ipython-genutils, jsonschema, six, decorator, traitlets, jupyter-core, nbformat, testpath, mistune, pygments, MarkupSafe, Jinja2, entrypoints, pandocfilters, webencodings, html5lib, bleach, nbconvert, python-dateutil, pyzmq, jupyter-client, tornado, jedi, ptyprocess, pexpect, simplegeneric, pickleshare, wcwidth, prompt-toolkit, ipython, ipykernel, terminado, notebook, widgetsnbextension, ipywidgets, qtconsole, jupyter-console, jupyter, pytz, numpy, pandas, regex, bz2file, urllib3, certifi, idna, chardet, requests, boto, smart-open, scipy, gensim, pbr, lda, lxml, Werkzeug, itsdangerous, click, flask, cycler, pyparsing, matplotlib, bkcharts, PyYAML, bokeh, dariah-topics
  Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.9.6 MarkupSafe-1.0 PyYAML-3.12 Werkzeug-0.12.2 bkcharts-0.2 bleach-2.0.0 bokeh-0.12.6 boto-2.48.0 bz2file-0.98 certifi-2017.7.27.1 chardet-3.0.4 click-6.7 coverage-4.4.1 cycler-0.10.0 dariah-topics decorator-4.1.2 entrypoints-0.2.3 flask-0.12.2 gensim-2.3.0 html5lib-0.999999999 idna-2.5 ipykernel-4.6.1 ipython-6.1.0 ipython-genutils-0.2.0 ipywidgets-6.0.0 itsdangerous-0.24 jedi-0.10.2 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.1.0 jupyter-console-5.1.0 jupyter-core-4.3.0 lda-1.0.5 lxml-3.8.0 matplotlib-2.0.2 mistune-0.7.4 nbconvert-5.2.1 nbformat-4.3.0 nose-1.3.7 nosexcover-1.0.11 notebook-5.0.0 numpy-1.13.1 pandas-0.20.3 pandocfilters-1.4.1 pbr-3.1.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.15 ptyprocess-0.5.2 pygments-2.2.0 pyparsing-2.2.0 python-dateutil-2.6.1 pytz-2017.2 pyzmq-16.0.2 qtconsole-4.3.0 regex-2017.7.28 requests-2.18.2 scipy-0.19.1 simplegeneric-0.8.1 six-1.10.0 smart-open-1.5.3 terminado-0.6 testpath-0.3.1 tornado-4.5.1 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-2.0.0
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing dariah_topics.egg-info/PKG-INFO
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing top-level names to dariah_topics.egg-info/top_level.txt
writing requirements to dariah_topics.egg-info/requires.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:341: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0'
  normalized_version,
warning: sdist: standard file not found: should have one of README, README.rst, README.txt

running check
warning: check: missing required meta-data: url

creating dariah_topics-0.2.0.dev0
creating dariah_topics-0.2.0.dev0/dariah_topics
creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info
creating dariah_topics-0.2.0.dev0/test
copying files to dariah_topics-0.2.0.dev0...
copying setup.cfg -> dariah_topics-0.2.0.dev0
copying setup.py -> dariah_topics-0.2.0.dev0
copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/doclist.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/meta.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-0.2.0.dev0/test
Writing dariah_topics-0.2.0.dev0/setup.cfg
Creating tar archive
removing 'dariah_topics-0.2.0.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
copying dariah_topics/evaluation.py -> build/lib/dariah_topics
copying dariah_topics/visualization.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL
+ nosetests --cover-html
.....................
Name                             Stmts   Miss  Cover
----------------------------------------------------
dariah_topics/__init__.py            0      0   100%
dariah_topics/doclist.py            93      6    94%
dariah_topics/preprocessing.py     233      9    96%
----------------------------------------------------
TOTAL                              326     15    95%
----------------------------------------------------------------------
Ran 21 tests in 9.180s

OK
Recording test results
[Cobertura] Publishing Cobertura coverage report...
Publishing Cobertura coverage results...
Cobertura coverage report found.
[Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@40680053[description=A python library for topic modeling.,homepage=,name=Topics,license=<null>,fork=true,size=186569,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:62b18e2) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/62b18e2fab0f19b449738df357da62c0de025407
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: 1.0
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: SUCCESS