Started by GitHub push by severinsimmler Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision ad2894f570fc94f7c50d89cee98c18220e20fb91 (refs/remotes/origin/testing) Commit message: "Update MALLET link in notebook" > git config core.sparsecheckout # timeout=10 > git checkout -f ad2894f570fc94f7c50d89cee98c18220e20fb91 > git rev-list 8bd3d3baa35d6e67054eaca5251603c104905aca # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda638155822866993049.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting sphinx (from -r requirements-dev.txt (line 5)) Using cached Sphinx-1.6.4-py2.py3-none-any.whl Collecting nbsphinx (from -r requirements-dev.txt (line 6)) Using cached nbsphinx-0.2.14-py2.py3-none-any.whl Collecting recommonmark (from -r requirements-dev.txt (line 7)) Using cached recommonmark-0.4.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.20.3-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting lda>=1.0.5 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl Collecting lxml>=3.6.4 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached lxml-4.1.0-cp35-cp35m-manylinux1_x86_64.whl Collecting flask>=0.11.1 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached Flask-0.12.2-py2.py3-none-any.whl Collecting matplotlib>=1.5.3 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-2.1.0-cp35-cp35m-manylinux1_x86_64.whl Collecting bokeh>=0.12.6 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.4.1-cp35-cp35m-manylinux1_x86_64.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Using cached qtconsole-4.3.1-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_console-5.2.0-py2.py3-none-any.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Using cached notebook-5.2.0-py2.py3-none-any.whl Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipykernel-4.6.1-py3-none-any.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipywidgets-7.0.1-py2.py3-none-any.whl Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 5)) Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 5)) Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Babel-2.5.1-py2.py3-none-any.whl Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 5)) Using cached alabaster-0.7.10-py2.py3-none-any.whl Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Jinja2-2.9.6-py2.py3-none-any.whl Collecting six>=1.5 (from sphinx->-r requirements-dev.txt (line 5)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 5)) Using cached docutils-0.14-py3-none-any.whl Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from sphinx->-r requirements-dev.txt (line 5)) Collecting imagesize (from sphinx->-r requirements-dev.txt (line 5)) Using cached imagesize-0.7.1-py2.py3-none-any.whl Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 5)) Using cached requests-2.18.4-py2.py3-none-any.whl Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 6)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting nbformat (from nbsphinx->-r requirements-dev.txt (line 6)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 7)) Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.2-py2.py3-none-any.whl Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached scipy-0.19.1-cp35-cp35m-manylinux1_x86_64.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pbr-3.1.1-py2.py3-none-any.whl Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached Werkzeug-0.12.2-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pyparsing-2.2.0-py2.py3-none-any.whl Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting jupyter-client>=4.1 (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_client-5.1.0-py2.py3-none-any.whl Collecting jupyter-core (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_core-4.3.0-py2.py3-none-any.whl Collecting ipython-genutils (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting ipython (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython-6.2.1-py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached testpath-0.3.1-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached bleach-2.1.1-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting mistune>=0.7.4 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached mistune-0.7.4-py2.py3-none-any.whl Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached widgetsnbextension-3.0.3-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 5)) Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached idna-2.6-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached certifi-2017.7.27.1-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 6)) Using cached decorator-4.1.2-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsphinx->-r requirements-dev.txt (line 6)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached boto-2.48.0-py2.py3-none-any.whl Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting pyzmq>=13 (from jupyter-client>=4.1->qtconsole->jupyter->-r requirements-dev.txt (line 4)) Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting pickleshare (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting pexpect; sys_platform != "win32" (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached pexpect-4.2.1-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached jedi-0.11.0-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached html5lib-1.0b10-py2.py3-none-any.whl Collecting parso==0.1.0 (from jedi>=0.10->ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached parso-0.1.0-py2.py3-none-any.whl Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Installing collected packages: nose, coverage, nosexcover, six, decorator, ipython-genutils, traitlets, pickleshare, ptyprocess, pexpect, Pygments, parso, jedi, wcwidth, prompt-toolkit, simplegeneric, ipython, pyzmq, jupyter-core, python-dateutil, jupyter-client, tornado, ipykernel, qtconsole, jupyter-console, terminado, MarkupSafe, Jinja2, jsonschema, nbformat, testpath, entrypoints, webencodings, html5lib, bleach, pandocfilters, mistune, nbconvert, notebook, widgetsnbextension, ipywidgets, jupyter, sphinxcontrib-websupport, snowballstemmer, pytz, babel, alabaster, docutils, imagesize, idna, chardet, certifi, urllib3, requests, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, scipy, boto, bz2file, smart-open, gensim, pbr, lda, lxml, Werkzeug, itsdangerous, click, flask, cycler, pyparsing, matplotlib, PyYAML, bokeh, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.9.6 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.12.2 alabaster-0.7.10 babel-2.5.1 bleach-2.1.1 bokeh-0.12.10 boto-2.48.0 bz2file-0.98 certifi-2017.7.27.1 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.1 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 gensim-3.0.1 html5lib-1.0b10 idna-2.6 imagesize-0.7.1 ipykernel-4.6.1 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.1 itsdangerous-0.24 jedi-0.11.0 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.1.0 jupyter-console-5.2.0 jupyter-core-4.3.0 lda-1.0.5 lxml-4.1.0 matplotlib-2.1.0 mistune-0.7.4 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.14 nose-1.3.7 nosexcover-1.0.11 notebook-5.2.0 numpy-1.13.3 pandas-0.20.3 pandocfilters-1.4.2 parso-0.1.0 pbr-3.1.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.15 ptyprocess-0.5.2 pyparsing-2.2.0 python-dateutil-2.6.1 pytz-2017.2 pyzmq-16.0.2 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.9.23 requests-2.18.4 scipy-0.19.1 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.3 snowballstemmer-1.2.1 sphinx-1.6.4 sphinxcontrib-websupport-1.0.1 terminado-0.6 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.3 + ./setup.py sdist bdist_wheel running sdist running egg_info writing requirements to dariah_topics.egg-info/requires.txt writing top-level names to dariah_topics.egg-info/top_level.txt writing dariah_topics.egg-info/PKG-INFO writing dependency_links to dariah_topics.egg-info/dependency_links.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url creating dariah_topics-0.3.0.dev1 creating dariah_topics-0.3.0.dev1/dariah_topics creating dariah_topics-0.3.0.dev1/dariah_topics.egg-info creating dariah_topics-0.3.0.dev1/test copying files to dariah_topics-0.3.0.dev1... copying README.md -> dariah_topics-0.3.0.dev1 copying setup.cfg -> dariah_topics-0.3.0.dev1 copying setup.py -> dariah_topics-0.3.0.dev1 copying dariah_topics/__init__.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/meta.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.3.0.dev1/test Writing dariah_topics-0.3.0.dev1/setup.cfg Creating tar archive removing 'dariah_topics-0.3.0.dev1' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.3.0.dev1-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.3.0.dev1.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.3.0.dev1-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/doclist.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/mallet.py' adding 'dariah_topics/meta.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-0.3.0.dev1.dist-info/DESCRIPTION.rst' adding 'dariah_topics-0.3.0.dev1.dist-info/metadata.json' adding 'dariah_topics-0.3.0.dev1.dist-info/top_level.txt' adding 'dariah_topics-0.3.0.dev1.dist-info/WHEEL' adding 'dariah_topics-0.3.0.dev1.dist-info/METADATA' adding 'dariah_topics-0.3.0.dev1.dist-info/RECORD' + ./setup.py build_sphinx -a running build_sphinx Running Sphinx v1.6.4 loading pickled environment... not yet created [autosummary] generating autosummary for: CONTRIBUTING.md, IntroducingGensim.ipynb, IntroducingLda.ipynb, IntroducingMallet.ipynb, README.md, demonstrator/README.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst, presentation_topic_over_time.ipynb WordCloud functions not available, they require the wordcloud module loading intersphinx inventory from https://matplotlib.org/objects.inv... loading intersphinx inventory from https://radimrehurek.com/gensim/objects.inv... loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from http://docs.python.org/3/objects.inv... intersphinx inventory has moved: http://docs.python.org/3/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: all of 0 po files building [html]: all source files updating environment: 16 added, 0 changed, 0 removed reading sources... [ 6%] CONTRIBUTING reading sources... [ 12%] IntroducingGensim reading sources... [ 18%] IntroducingLda reading sources... [ 25%] IntroducingMallet reading sources... [ 31%] README reading sources... [ 37%] demonstrator/README reading sources... [ 43%] docs/gen/dariah_topics reading sources... [ 50%] docs/gen/dariah_topics.doclist reading sources... [ 56%] docs/gen/dariah_topics.evaluation reading sources... [ 62%] docs/gen/dariah_topics.mallet reading sources... [ 68%] docs/gen/dariah_topics.meta reading sources... [ 75%] docs/gen/dariah_topics.preprocessing reading sources... [ 81%] docs/gen/dariah_topics.visualization reading sources... [ 87%] docs/gen/modules reading sources... [ 93%] index reading sources... [100%] presentation_topic_over_time WARNING: /mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:3034: (SEVERE/4) Title level inconsistent: Define path to corpus folder ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ WARNING: /mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:3050: (SEVERE/4) Title level inconsistent: Path to mallet folder ^^^^^^^^^^^^^^^^^^^^^ WARNING: /mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:3071: (SEVERE/4) Title level inconsistent: Output folder ^^^^^^^^^^^^^ WARNING: /mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:3088: (SEVERE/4) Title level inconsistent: The Mallet corpus model ^^^^^^^^^^^^^^^^^^^^^^^ /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.with_segment_files:12: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.forall:8: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.forall:8: WARNING: Inline emphasis start-string without end-string. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.forall:16: WARNING: Definition list ends without a blank line; unexpected unindent. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.forall:8: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.forall:8: WARNING: Inline emphasis start-string without end-string. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.forall:16: WARNING: Definition list ends without a blank line; unexpected unindent. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_doc_term_matrix:9: WARNING: Definition list ends without a blank line; unexpected unindent. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:16: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.filter_pos_tags:8: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_csv:11: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: Unknown target name: "bag-of-words". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.filter_pos_tags:4: WARNING: Unknown target name: "dariah-dkpro-wrapper". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_csv:4: WARNING: Unknown target name: "dariah-dkpro-wrapper". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.save_sparse_bow:4: WARNING: Unknown target name: ".mm file". looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/presentation_topic_over_time.ipynb: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 6%] CONTRIBUTING writing output... [ 12%] IntroducingGensim writing output... [ 18%] IntroducingLda writing output... [ 25%] IntroducingMallet writing output... [ 31%] README writing output... [ 37%] demonstrator/README writing output... [ 43%] docs/gen/dariah_topics writing output... [ 50%] docs/gen/dariah_topics.doclist writing output... [ 56%] docs/gen/dariah_topics.evaluation writing output... [ 62%] docs/gen/dariah_topics.mallet writing output... [ 68%] docs/gen/dariah_topics.meta writing output... [ 75%] docs/gen/dariah_topics.preprocessing writing output... [ 81%] docs/gen/dariah_topics.visualization writing output... [ 87%] docs/gen/modules writing output... [ 93%] index writing output... [100%] presentation_topic_over_time /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.full_path:: WARNING: 'any' reference target not found: Path /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.full_path:10: WARNING: 'any' reference target not found: Path() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.get_docs:6: WARNING: 'any' reference target not found: _get_item(self, index) /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.full_path:: WARNING: 'any' reference target not found: Path /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.full_path:10: WARNING: 'any' reference target not found: Path() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.with_segment_files:5: WARNING: 'any' reference target not found: strings.Formatter /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_binary:: WARNING: 'any' reference target not found: stoplist /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_binary:: WARNING: 'any' reference target not found: replacements_files /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_binary:: WARNING: 'any' reference target not found: gram_sizes=1,2 /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_state /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_state /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_topic_docs /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_doc_topics /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: num_iterations = 0 /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:3: WARNING: 'any' reference target not found: documents /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:7: WARNING: more than one target found for 'any' cross-reference 'segments': could be :py:meth: or :py:meth: /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:7: WARNING: 'any' reference target not found: segments=True /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:3: WARNING: 'any' reference target not found: documents /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:7: WARNING: more than one target found for 'any' cross-reference 'segments': could be :py:meth: or :py:meth: /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:7: WARNING: 'any' reference target not found: segments=True /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: (?pattern) /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: _ /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: author /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: title /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_doc_term_matrix:4: WARNING: 'any' reference target not found: _wordcounts() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: _create_large_counter() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: _create_sparse_index()` /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: get_labels() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: doc_labels /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: doc_tokens /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: type_dictionary /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: doc_ids /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: type_dictionary /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.create_sparse_bow:4: WARNING: 'any' reference target not found: doc_dictionary /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.find_hapax:4: WARNING: 'any' reference target not found: create_sparse_matrix() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.find_stopwords:4: WARNING: 'any' reference target not found: create_sparse_matrix() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.make_doc2bow_list:4: WARNING: 'any' reference target not found: get_document_topics() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_csv:4: WARNING: 'any' reference target not found: create_document_list() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_tei:4: WARNING: 'any' reference target not found: create_document_list() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_txt:4: WARNING: 'any' reference target not found: create_document_list() /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.segment:1: WARNING: 'any' reference target not found: segment_size /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.tokenize:4: WARNING: 'any' reference target not found: lower generating indices... genindex py-modindex highlighting module code... [ 16%] dariah_topics.doclist highlighting module code... [ 33%] dariah_topics.mallet highlighting module code... [ 50%] dariah_topics.meta highlighting module code... [ 66%] dariah_topics.visualization highlighting module code... [ 83%] dariah_topics.evaluation highlighting module code... [100%] dariah_topics.preprocessing writing additional pages... search copying images... [ 20%] demonstrator/screenshot.png copying images... [ 40%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_16_2.png copying images... [ 60%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_20_0.png copying images... [ 80%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_17_2.png copying images... [100%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_18_2.png copying static files... /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/sphinx/application.py:445: RemovedInSphinx17Warning: app.status_iterator() is now deprecated. Use sphinx.util.status_iterator() instead. RemovedInSphinx17Warning) WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 65 warnings. + nosetests --cover-html ./mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/bokeh/util/deprecation.py:34: BokehDeprecationWarning: responsive parameter was deprecated in Bokeh 0.12.10 and will be removed, use sizing_mode='fixed' for responsive=False or sizing_mode='scale_width' for responsive=True instead. warn(message) ...................... Name Stmts Miss Cover ---------------------------------------------------- dariah_topics/__init__.py 7 0 100% dariah_topics/doclist.py 93 14 85% dariah_topics/preprocessing.py 220 100 55% dariah_topics/visualization.py 176 119 32% ---------------------------------------------------- TOTAL 496 233 53% ---------------------------------------------------------------------- Ran 23 tests in 1.953s OK [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@6871e028[description=A Python library for Text Mining and Topic Modeling.,homepage=,name=Topics,license=,fork=true,size=186682,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:ad2894f) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/ad2894f570fc94f7c50d89cee98c18220e20fb91 Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] scored: 1.0 [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: SUCCESS