Started by GitHub push by ThoraHagen
Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
> /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from git://github.com/DARIAH-DE/Topics
> /usr/bin/git --version # timeout=10
using GIT_ASKPASS to set credentials
> /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
> /usr/bin/git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
> /usr/bin/git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 6ccd83f1bbc73c6b76bf27e04f3d8ba38a04dd5c (refs/remotes/origin/testing)
> /usr/bin/git config core.sparsecheckout # timeout=10
> /usr/bin/git checkout -f 6ccd83f1bbc73c6b76bf27e04f3d8ba38a04dd5c
Commit message: "skip DKPro test if necessary"
> /usr/bin/git rev-list --no-walk df0701d2db4dd204a86e0bc5de1b57b37f29fa07 # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda2230744565168472539.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (18.1)
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting pytest (from -r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/bb/d5/7601c468ded9a59478dcb39d21e24d58bb375681c64a06fbb629d2bc2ac3/pytest-4.0.0-py2.py3-none-any.whl
Collecting pytest-cov (from -r requirements-dev.txt (line 5))
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Collecting nbsmoke (from -r requirements-dev.txt (line 6))
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Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 11))
Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-install-67shab7t/nbsphinx
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Collecting pandas>=0.19.2 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
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Collecting regex>=2017.01.14 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting gensim>=0.13.2 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
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Collecting lda>=1.0.5 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
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Collecting numpy>=1.3 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
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Collecting lxml>=3.6.4 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/eb/e2/02d18a1b3021b65409dd860f91cf0d68d79900f172bb3cc93cff21c3c951/lxml-4.2.5-cp35-cp35m-manylinux1_x86_64.whl
Collecting matplotlib>=1.5.3 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/ad/4c/0415f15f96864c3a2242b1c74041a806c100c1b21741206c5d87684437c6/matplotlib-3.0.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting bokeh>=0.12.6 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting metadata_toolbox (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting cophi_toolbox>=0.1.1.dev0 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting pluggy>=0.7 (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/1c/e7/017c262070af41fe251401cb0d0e1b7c38f656da634cd0c15604f1f30864/pluggy-0.8.0-py2.py3-none-any.whl
Collecting pathlib2>=2.2.0; python_version < "3.6" (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/66/a7/9f8d84f31728d78beade9b1271ccbfb290c41c1e4dc13dbd4997ad594dcd/pathlib2-2.3.2-py2.py3-none-any.whl
Collecting atomicwrites>=1.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/3a/9a/9d878f8d885706e2530402de6417141129a943802c084238914fa6798d97/atomicwrites-1.2.1-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->-r requirements-dev.txt (line 4)) (40.6.2)
Collecting more-itertools>=4.0.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/79/b1/eace304ef66bd7d3d8b2f78cc374b73ca03bc53664d78151e9df3b3996cc/more_itertools-4.3.0-py3-none-any.whl
Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/3e/c7/3da685ef117d42ac8d71af525208759742dd235f8094221fdaafcd3dba8f/py-1.7.0-py2.py3-none-any.whl
Collecting attrs>=17.4.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/3a/e1/5f9023cc983f1a628a8c2fd051ad19e76ff7b142a0faf329336f9a62a514/attrs-18.2.0-py2.py3-none-any.whl
Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl
Collecting coverage>=4.4 (from pytest-cov->-r requirements-dev.txt (line 5))
Using cached https://files.pythonhosted.org/packages/fa/7c/e728df519842d537b2a4498553e2396867f50120fe303cd2b45e54b7e323/coverage-4.5.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting beautifulsoup4 (from nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/21/0a/47fdf541c97fd9b6a610cb5fd518175308a7cc60569962e776ac52420387/beautifulsoup4-4.6.3-py3-none-any.whl
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Using cached https://files.pythonhosted.org/packages/d8/b0/f0be5c5ab335196f5cce96e5b889a4fcf5bfe462eb0acc05cd7e2caf65eb/ipykernel-5.1.0-py3-none-any.whl
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Using cached https://files.pythonhosted.org/packages/44/98/af7a72c9a543b1487d92813c648cb9b9adfbc96faef5455d60f4439aa99b/pyflakes-2.0.0-py2.py3-none-any.whl
Collecting requests (from nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/ff/17/5cbb026005115301a8fb2f9b0e3e8d32313142fe8b617070e7baad20554f/requests-2.20.1-py2.py3-none-any.whl
Collecting jupyter-client (from nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/94/dd/fe6c4d683b09eb05342bd2816b7779663f71762b4fa9c2d5203d35d17354/jupyter_client-5.2.3-py2.py3-none-any.whl
Collecting nbconvert (from nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/b5/bb/94c493051d60e5b9c0f7f9a368b324201818c1b1c4cae85d1e49a41846c7/nbconvert-5.4.0-py2.py3-none-any.whl
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Using cached https://files.pythonhosted.org/packages/da/27/9a654d2b6cc1eaa517d1c5a4405166c7f6d72f04f6e7eea41855fe808a46/nbformat-4.4.0-py2.py3-none-any.whl
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Using cached https://files.pythonhosted.org/packages/e0/7a/8aefbc0ed078dec7951ac9a06dcd1869243ecd7bcbce26fa47bf5e469a8f/qtconsole-4.4.3-py2.py3-none-any.whl
Collecting notebook (from jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/a2/5d/d1907cd32ac00b5ead56f6e61d9794fa60ef105a22ac5da6e7556011580f/notebook-5.7.2-py2.py3-none-any.whl
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Using cached https://files.pythonhosted.org/packages/be/a4/162f9ebb6489421fe46dcca2ae420369edfee4b563c668d93cb4605d12ba/testpath-0.4.2-py2.py3-none-any.whl
Collecting ipython-genutils (from nbformat->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/fa/bc/9bd3b5c2b4774d5f33b2d544f1460be9df7df2fe42f352135381c347c69a/ipython_genutils-0.2.0-py2.py3-none-any.whl
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl
Collecting Send2Trash (from notebook->jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/49/46/c3dc27481d1cc57b9385aff41c474ceb7714f7935b1247194adae45db714/Send2Trash-1.5.0-py3-none-any.whl
Collecting prometheus-client (from notebook->jupyter->-r requirements-dev.txt (line 9))
Collecting terminado>=0.8.1 (from notebook->jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/2e/20/a26211a24425923d46e1213b376a6ee60dc30bcdf1b0c345e2c3769deb1c/terminado-0.8.1-py2.py3-none-any.whl
Collecting widgetsnbextension~=3.4.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/8a/81/35789a3952afb48238289171728072d26d6e76649ddc8b3588657a2d78c1/widgetsnbextension-3.4.2-py2.py3-none-any.whl
Collecting prompt-toolkit<2.1.0,>=2.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/d1/e6/adb3be5576f5d27c6faa33f1e9fea8fe5dbd9351db12148de948507e352c/prompt_toolkit-2.0.7-py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10))
Using cached https://files.pythonhosted.org/packages/3e/a5/e188980ef1d0a4e0788b5143ea933f9afd760df38fec4c0b72b5ae3060c8/MarkupSafe-1.1.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 11))
Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/a0/d8/8b000ffeba218d47cd81fbd0bd0b2790742f81ffe116964a298be785a8a4/boto3-1.9.50-py2.py3-none-any.whl
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/23/10/c0b78c27298029e4454a472a1919bde20cb182dab1662cec7f2ca1dcc523/boto-2.49.0-py2.py3-none-any.whl
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting pickleshare (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/9a/41/220f49aaea88bc6fa6cba8d05ecf24676326156c23b991e80b3f2fc24c77/pickleshare-0.7.5-py2.py3-none-any.whl
Collecting pexpect; sys_platform != "win32" (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/89/e6/b5a1de8b0cc4e07ca1b305a4fcc3f9806025c1b651ea302646341222f88b/pexpect-4.6.0-py2.py3-none-any.whl
Collecting jedi>=0.10 (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/7a/1a/9bd24a185873b998611c2d8d4fb15cd5e8a879ead36355df7ee53e9111bf/jedi-0.13.1-py2.py3-none-any.whl
Collecting backcall (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Collecting webencodings (from bleach->nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl
Collecting ptyprocess; os_name != "nt" (from terminado>=0.8.1->notebook->jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/d1/29/605c2cc68a9992d18dada28206eeada56ea4bd07a239669da41674648b6f/ptyprocess-0.6.0-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.1.0,>=2.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9))
Using cached https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/d7/14/2a0004d487464d120c9fb85313a75cd3d71a7506955be458eebfe19a6b1d/s3transfer-0.1.13-py2.py3-none-any.whl
Collecting botocore<1.13.0,>=1.12.50 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/82/c1/a26012b4dbca2e2ae06d7b24dc6b4378c0b0544d25f3e3f216612db37033/botocore-1.12.50-py2.py3-none-any.whl
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Using cached https://files.pythonhosted.org/packages/b7/31/05c8d001f7f87f0f07289a5fc0fc3832e9a57f2dbd4d3b0fee70e0d51365/jmespath-0.9.3-py2.py3-none-any.whl
Collecting parso>=0.3.0 (from jedi>=0.10->ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Using cached https://files.pythonhosted.org/packages/09/51/9c48a46334be50c13d25a3afe55fa05c445699304c5ad32619de953a2305/parso-0.3.1-py2.py3-none-any.whl
Building wheels for collected packages: nbsphinx
Running setup.py bdist_wheel for nbsphinx: started
Running setup.py bdist_wheel for nbsphinx: finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-1i6jfnlp/wheels/a3/7b/ff/b71160a2e088926eb13abcf8e0cde94c0aa8400c67d3df57f5
Successfully built nbsphinx
nbsphinx 0.3.5 has requirement nbconvert!=5.4, but you'll have nbconvert 5.4.0 which is incompatible.
Installing collected packages: pluggy, six, pathlib2, atomicwrites, more-itertools, py, attrs, pytest, coverage, pytest-cov, beautifulsoup4, pickleshare, ptyprocess, pexpect, wcwidth, prompt-toolkit, parso, jedi, backcall, Pygments, ipython-genutils, decorator, traitlets, ipython, tornado, python-dateutil, jupyter-core, pyzmq, jupyter-client, ipykernel, pyflakes, certifi, urllib3, idna, chardet, requests, pandocfilters, mistune, jsonschema, nbformat, defusedxml, entrypoints, webencodings, bleach, testpath, MarkupSafe, Jinja2, nbconvert, nbsmoke, qtconsole, Send2Trash, prometheus-client, terminado, notebook, widgetsnbextension, ipywidgets, jupyter-console, jupyter, snowballstemmer, sphinxcontrib-websupport, alabaster, pytz, babel, pyparsing, packaging, docutils, imagesize, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, jmespath, botocore, s3transfer, boto3, boto, bz2file, smart-open, scipy, gensim, pbr, lda, lxml, kiwisolver, cycler, matplotlib, pillow, PyYAML, bokeh, parse, metadata-toolbox, cophi-toolbox, dariah-topics
Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.10 MarkupSafe-1.1.0 PyYAML-3.13 Pygments-2.2.0 Send2Trash-1.5.0 alabaster-0.7.12 atomicwrites-1.2.1 attrs-18.2.0 babel-2.6.0 backcall-0.1.0 beautifulsoup4-4.6.3 bleach-3.0.2 bokeh-1.0.1 boto-2.49.0 boto3-1.9.50 botocore-1.12.50 bz2file-0.98 certifi-2018.10.15 chardet-3.0.4 commonmark-0.5.4 cophi-toolbox-0.1.1.dev0 coverage-4.5.2 cycler-0.10.0 dariah-topics decorator-4.3.0 defusedxml-0.5.0 docutils-0.14 entrypoints-0.2.3 gensim-3.6.0 idna-2.7 imagesize-1.1.0 ipykernel-5.1.0 ipython-7.1.1 ipython-genutils-0.2.0 ipywidgets-7.4.2 jedi-0.13.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.3 jupyter-console-6.0.0 jupyter-core-4.4.0 kiwisolver-1.0.1 lda-1.1.0 lxml-4.2.5 matplotlib-3.0.2 metadata-toolbox-0.1.0.dev0 mistune-0.8.4 more-itertools-4.3.0 nbconvert-5.4.0 nbformat-4.4.0 nbsmoke-0.2.7 nbsphinx-0.3.5 notebook-5.7.2 numpy-1.15.4 packaging-18.0 pandas-0.23.4 pandocfilters-1.4.2 parse-1.9.0 parso-0.3.1 pathlib2-2.3.2 pbr-3.1.1 pexpect-4.6.0 pickleshare-0.7.5 pillow-5.3.0 pluggy-0.8.0 prometheus-client-0.4.2 prompt-toolkit-2.0.7 ptyprocess-0.6.0 py-1.7.0 pyflakes-2.0.0 pyparsing-2.3.0 pytest-4.0.0 pytest-cov-2.6.0 python-dateutil-2.7.5 pytz-2018.7 pyzmq-17.1.2 qtconsole-4.4.3 recommonmark-0.4.0 regex-2018.11.22 requests-2.20.1 s3transfer-0.1.13 scipy-1.1.0 six-1.11.0 smart-open-1.7.1 snowballstemmer-1.2.1 sphinx-1.8.2 sphinxcontrib-websupport-1.1.0 terminado-0.8.1 testpath-0.4.2 tornado-5.1.1 traitlets-4.3.2 urllib3-1.24.1 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.4.2
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing dariah_topics.egg-info/PKG-INFO
writing requirements to dariah_topics.egg-info/requires.txt
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing top-level names to dariah_topics.egg-info/top_level.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
creating dariah_topics-1.0.2.dev0
creating dariah_topics-1.0.2.dev0/dariah_topics
creating dariah_topics-1.0.2.dev0/dariah_topics.egg-info
creating dariah_topics-1.0.2.dev0/test
copying files to dariah_topics-1.0.2.dev0...
copying README.md -> dariah_topics-1.0.2.dev0
copying setup.cfg -> dariah_topics-1.0.2.dev0
copying setup.py -> dariah_topics-1.0.2.dev0
copying dariah_topics/__init__.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/modeling.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/utils.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-1.0.2.dev0/test
Writing dariah_topics-1.0.2.dev0/setup.cfg
Creating tar archive
removing 'dariah_topics-1.0.2.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/modeling.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/utils.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0-py3.5.egg-info
running install_scripts
adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
creating build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0.dist-info/WHEEL
creating 'dist/dariah_topics-1.0.2.dev0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/modeling.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/utils.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-1.0.2.dev0.dist-info/LICENSE'
adding 'dariah_topics-1.0.2.dev0.dist-info/METADATA'
adding 'dariah_topics-1.0.2.dev0.dist-info/WHEEL'
adding 'dariah_topics-1.0.2.dev0.dist-info/top_level.txt'
adding 'dariah_topics-1.0.2.dev0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:470: UserWarning: Normalizing '1.0.2.dev' to '1.0.2.dev0'
normalized_version,
+ pytest --nbsmoke-run
============================= test session starts ==============================
platform linux -- Python 3.5.3, pytest-4.0.0, py-1.7.0, pluggy-0.8.0
rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg
plugins: cov-2.6.0, nbsmoke-0.2.7
collected 58 items
dariah_topics/postprocessing.py ........... [ 18%]
dariah_topics/preprocessing.py ........................... [ 65%]
dariah_topics/utils.py ...... [ 75%]
notebooks/IntroducingGensim.ipynb . [ 77%]
notebooks/IntroducingLda.ipynb . [ 79%]
notebooks/IntroducingLda_DKProWrapper.ipynb F [ 81%]
notebooks/IntroducingMallet.ipynb . [ 82%]
notebooks/Visualizations.ipynb . [ 84%]
test/test_fuzzy_segmenting.py ......... [100%]
=================================== FAILURES ===================================
_______________________________________ _______________________________________
self = <CallInfo when='call' exception: An error occurred while executing the following cell:
------------------
meta = pd.co...0m[0;34m:[0m[0;34m[0m[0m
[0;31mValueError[0m: No objects to concatenate
ValueError: No objects to concatenate
>
func = <function call_runtest_hook.<locals>.<lambda> at 0x7f39e9ab3e18>
when = 'call', treat_keyboard_interrupt_as_exception = False
def __init__(self, func, when, treat_keyboard_interrupt_as_exception=False):
#: context of invocation: one of "setup", "call",
#: "teardown", "memocollect"
self.when = when
self.start = time()
try:
> self.result = func()
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/_pytest/runner.py:211:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> lambda: ihook(item=item, **kwds),
when=when,
treat_keyboard_interrupt_as_exception=item.config.getvalue("usepdb"),
)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/_pytest/runner.py:193:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <_HookCaller 'pytest_runtest_call'>, args = ()
kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
notincall = set()
def __call__(self, *args, **kwargs):
if args:
raise TypeError("hook calling supports only keyword arguments")
assert not self.is_historic()
if self.spec and self.spec.argnames:
notincall = (
set(self.spec.argnames) - set(["__multicall__"]) - set(kwargs.keys())
)
if notincall:
warnings.warn(
"Argument(s) {} which are declared in the hookspec "
"can not be found in this hook call".format(tuple(notincall)),
stacklevel=2,
)
> return self._hookexec(self, self.get_hookimpls(), kwargs)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pluggy/hooks.py:284:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <_pytest.config.PytestPluginManager object at 0x7f3a2cefc400>
hook = <_HookCaller 'pytest_runtest_call'>
methods = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...3a27c80828>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f3a27c14400>>]
kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
def _hookexec(self, hook, methods, kwargs):
# called from all hookcaller instances.
# enable_tracing will set its own wrapping function at self._inner_hookexec
> return self._inner_hookexec(hook, methods, kwargs)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pluggy/manager.py:67:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
hook = <_HookCaller 'pytest_runtest_call'>
methods = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...3a27c80828>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f3a27c14400>>]
kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
methods,
kwargs,
> firstresult=hook.spec.opts.get("firstresult") if hook.spec else False,
)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pluggy/manager.py:61:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
hook_impls = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...3a27c80828>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f3a27c14400>>]
caller_kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
firstresult = False
def _multicall(hook_impls, caller_kwargs, firstresult=False):
"""Execute a call into multiple python functions/methods and return the
result(s).
``caller_kwargs`` comes from _HookCaller.__call__().
"""
__tracebackhide__ = True
results = []
excinfo = None
try: # run impl and wrapper setup functions in a loop
teardowns = []
try:
for hook_impl in reversed(hook_impls):
try:
args = [caller_kwargs[argname] for argname in hook_impl.argnames]
except KeyError:
for argname in hook_impl.argnames:
if argname not in caller_kwargs:
raise HookCallError(
"hook call must provide argument %r" % (argname,)
)
if hook_impl.hookwrapper:
try:
gen = hook_impl.function(*args)
next(gen) # first yield
teardowns.append(gen)
except StopIteration:
_raise_wrapfail(gen, "did not yield")
else:
res = hook_impl.function(*args)
if res is not None:
results.append(res)
if firstresult: # halt further impl calls
break
except BaseException:
excinfo = sys.exc_info()
finally:
if firstresult: # first result hooks return a single value
outcome = _Result(results[0] if results else None, excinfo)
else:
outcome = _Result(results, excinfo)
# run all wrapper post-yield blocks
for gen in reversed(teardowns):
try:
gen.send(outcome)
_raise_wrapfail(gen, "has second yield")
except StopIteration:
pass
> return outcome.get_result()
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pluggy/callers.py:208:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <pluggy.callers._Result object at 0x7f3a27f0ce80>
def get_result(self):
"""Get the result(s) for this hook call.
If the hook was marked as a ``firstresult`` only a single value
will be returned otherwise a list of results.
"""
__tracebackhide__ = True
if self._excinfo is None:
return self._result
else:
ex = self._excinfo
if _py3:
> raise ex[1].with_traceback(ex[2])
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pluggy/callers.py:80:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
hook_impls = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...3a27c80828>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f3a27c14400>>]
caller_kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
firstresult = False
def _multicall(hook_impls, caller_kwargs, firstresult=False):
"""Execute a call into multiple python functions/methods and return the
result(s).
``caller_kwargs`` comes from _HookCaller.__call__().
"""
__tracebackhide__ = True
results = []
excinfo = None
try: # run impl and wrapper setup functions in a loop
teardowns = []
try:
for hook_impl in reversed(hook_impls):
try:
args = [caller_kwargs[argname] for argname in hook_impl.argnames]
except KeyError:
for argname in hook_impl.argnames:
if argname not in caller_kwargs:
raise HookCallError(
"hook call must provide argument %r" % (argname,)
)
if hook_impl.hookwrapper:
try:
gen = hook_impl.function(*args)
next(gen) # first yield
teardowns.append(gen)
except StopIteration:
_raise_wrapfail(gen, "did not yield")
else:
> res = hook_impl.function(*args)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pluggy/callers.py:187:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
item = <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>
def pytest_runtest_call(item):
_update_current_test_var(item, "call")
sys.last_type, sys.last_value, sys.last_traceback = (None, None, None)
try:
> item.runtest()
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/_pytest/runner.py:121:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>
def runtest(self):
self._skip()
with io.open(self.name,encoding='utf8') as nb:
notebook = nbformat.read(nb, as_version=4)
# TODO: which kernel? run in pytest's or use new one (make it option)
_timeout = self.parent.parent.config.getini('nbsmoke_cell_timeout')
kwargs = dict(timeout=int(_timeout) if _timeout!='' else 300,
allow_errors=False,
# or sys.version_info[1] ?
kernel_name='python')
ep = ExecutePreprocessor(**kwargs)
with cwd(os.path.dirname(self.name)): # jupyter notebook always does this, right?
> ep.preprocess(notebook,{})
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbsmoke/__init__.py:274:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f3a0249bb00>
nb = {'metadata': {'kernelspec': {'language': 'python', 'display_name': 'Python 3', 'name': 'python3'}, 'git': {'suppress_o...tic_heatmap.show()', 'execution_count': None, 'outputs': [], 'cell_type': 'code'}], 'nbformat': 4, 'nbformat_minor': 1}
resources = {}, km = None
def preprocess(self, nb, resources, km=None):
"""
Preprocess notebook executing each code cell.
The input argument `nb` is modified in-place.
Parameters
----------
nb : NotebookNode
Notebook being executed.
resources : dictionary
Additional resources used in the conversion process. For example,
passing ``{'metadata': {'path': run_path}}`` sets the
execution path to ``run_path``.
km: KernelManager (optional)
Optional kernel manager. If none is provided, a kernel manager will
be created.
Returns
-------
nb : NotebookNode
The executed notebook.
resources : dictionary
Additional resources used in the conversion process.
"""
with self.setup_preprocessor(nb, resources, km=km):
self.log.info("Executing notebook with kernel: %s" % self.kernel_name)
> nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py:361:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f3a0249bb00>
nb = {'metadata': {'kernelspec': {'language': 'python', 'display_name': 'Python 3', 'name': 'python3'}, 'git': {'suppress_o...tic_heatmap.show()', 'execution_count': None, 'outputs': [], 'cell_type': 'code'}], 'nbformat': 4, 'nbformat_minor': 1}
resources = {}
def preprocess(self, nb, resources):
"""
Preprocessing to apply on each notebook.
Must return modified nb, resources.
If you wish to apply your preprocessing to each cell, you might want
to override preprocess_cell method instead.
Parameters
----------
nb : NotebookNode
Notebook being converted
resources : dictionary
Additional resources used in the conversion process. Allows
preprocessors to pass variables into the Jinja engine.
"""
for index, cell in enumerate(nb.cells):
> nb.cells[index], resources = self.preprocess_cell(cell, resources, index)
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f3a0249bb00>
cell = {'metadata': {'scrolled': True, 'collapsed': False}, 'source': "meta = pd.concat([metadata.fname2metadata(str(path), p...m:\x1b[0m\x1b[0;34m\x1b[0m\x1b[0m\n", '\x1b[0;31mValueError\x1b[0m: No objects to concatenate']}], 'cell_type': 'code'}
resources = {}, cell_index = 19
def preprocess_cell(self, cell, resources, cell_index):
"""
Executes a single code cell. See base.py for details.
To execute all cells see :meth:`preprocess`.
"""
if cell.cell_type != 'code' or not cell.source.strip():
return cell, resources
reply, outputs = self.run_cell(cell, cell_index)
cell.outputs = outputs
cell_allows_errors = (self.allow_errors or "raises-exception"
in cell.metadata.get("tags", []))
if self.force_raise_errors or not cell_allows_errors:
for out in outputs:
if out.output_type == 'error':
> raise CellExecutionError.from_cell_and_msg(cell, out)
E nbconvert.preprocessors.execute.CellExecutionError: An error occurred while executing the following cell:
E ------------------
E meta = pd.concat([metadata.fname2metadata(str(path), pattern=pattern) for path in path_to_corpus.glob('*.csv')])
E meta[:5] # by adding '[:5]' to the variable, only the first 5 elements will be printed
E ------------------
E
E [0;31m---------------------------------------------------------------------------[0m
E [0;31mValueError[0m Traceback (most recent call last)
E [0;32m<ipython-input-7-30c5c181683a>[0m in [0;36m<module>[0;34m[0m
E [0;32m----> 1[0;31m [0mmeta[0m [0;34m=[0m [0mpd[0m[0;34m.[0m[0mconcat[0m[0;34m([0m[0;34m[[0m[0mmetadata[0m[0;34m.[0m[0mfname2metadata[0m[0;34m([0m[0mstr[0m[0;34m([0m[0mpath[0m[0;34m)[0m[0;34m,[0m [0mpattern[0m[0;34m=[0m[0mpattern[0m[0;34m)[0m [0;32mfor[0m [0mpath[0m [0;32min[0m [0mpath_to_corpus[0m[0;34m.[0m[0mglob[0m[0;34m([0m[0;34m'*.csv'[0m[0;34m)[0m[0;34m][0m[0;34m)[0m[0;34m[0m[0m
E [0m[1;32m 2[0m [0mmeta[0m[0;34m[[0m[0;34m:[0m[0;36m5[0m[0;34m][0m [0;31m# by adding '[:5]' to the variable, only the first 5 elements will be printed[0m[0;34m[0m[0m
E
E [0;32m~/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pandas/core/reshape/concat.py[0m in [0;36mconcat[0;34m(objs, axis, join, join_axes, ignore_index, keys, levels, names, verify_integrity, sort, copy)[0m
E [1;32m 223[0m [0mkeys[0m[0;34m=[0m[0mkeys[0m[0;34m,[0m [0mlevels[0m[0;34m=[0m[0mlevels[0m[0;34m,[0m [0mnames[0m[0;34m=[0m[0mnames[0m[0;34m,[0m[0;34m[0m[0m
E [1;32m 224[0m [0mverify_integrity[0m[0;34m=[0m[0mverify_integrity[0m[0;34m,[0m[0;34m[0m[0m
E [0;32m--> 225[0;31m copy=copy, sort=sort)
E [0m[1;32m 226[0m [0;32mreturn[0m [0mop[0m[0;34m.[0m[0mget_result[0m[0;34m([0m[0;34m)[0m[0;34m[0m[0m
E [1;32m 227[0m [0;34m[0m[0m
E
E [0;32m~/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pandas/core/reshape/concat.py[0m in [0;36m__init__[0;34m(self, objs, axis, join, join_axes, keys, levels, names, ignore_index, verify_integrity, copy, sort)[0m
E [1;32m 257[0m [0;34m[0m[0m
E [1;32m 258[0m [0;32mif[0m [0mlen[0m[0;34m([0m[0mobjs[0m[0;34m)[0m [0;34m==[0m [0;36m0[0m[0;34m:[0m[0;34m[0m[0m
E [0;32m--> 259[0;31m [0;32mraise[0m [0mValueError[0m[0;34m([0m[0;34m'No objects to concatenate'[0m[0;34m)[0m[0;34m[0m[0m
E [0m[1;32m 260[0m [0;34m[0m[0m
E [1;32m 261[0m [0;32mif[0m [0mkeys[0m [0;32mis[0m [0;32mNone[0m[0;34m:[0m[0;34m[0m[0m
E
E [0;31mValueError[0m: No objects to concatenate
E ValueError: No objects to concatenate
../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py:385: CellExecutionError
--- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ----
----------- coverage: platform linux, python 3.5.3-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml
=============================== warnings summary ===============================
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/scipy/sparse/sparsetools.py:21
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/scipy/sparse/sparsetools.py:21: DeprecationWarning: `scipy.sparse.sparsetools` is deprecated!
scipy.sparse.sparsetools is a private module for scipy.sparse, and should not be used.
_deprecated()
dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_gensim_document_topics
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)
dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_gensim_topics
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)
dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_document_topics
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
"""
dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_topics
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
"""
dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
notebooks/IntroducingGensim.ipynb::/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_client/manager.py:72: DeprecationWarning: KernelManager._kernel_name_changed is deprecated in traitlets 4.1: use @observe and @unobserve instead.
def _kernel_name_changed(self, name, old, new):
-- Docs: https://docs.pytest.org/en/latest/warnings.html
============== 1 failed, 57 passed, 10 warnings in 67.92 seconds ===============
Build step 'Virtualenv Builder' marked build as failure
Recording test results
[Cobertura] Publishing Cobertura coverage report...
[Cobertura] Publishing Cobertura coverage results...
[Cobertura] Cobertura coverage report found.
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@7116112d[description=A Python library for topic modeling.,homepage=https://dariah-de.github.io/Topics,name=Topics,fork=true,size=42294,milestones={},language=Python,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Fri, 23 Nov 2018 17:22:08 GMT], ETag=[W/"43b71c26106845d08c9e248b61a654b1"], Last-Modified=[Thu, 08 Nov 2018 02:39:54 GMT], OkHttp-Received-Millis=[1542993728553], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1542993728376], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[E02C:061B:550200:D15708:5BF83740], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1542997328], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:6ccd83f) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/6ccd83f1bbc73c6b76bf27e04f3d8ba38a04dd5c
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: FAILURE