Failed

integration_test.jupyter_integration_test (from nosetests)

Error Message

Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1
-------------------- >> begin captured logging << --------------------
root: ERROR: An error occurred while executing the following cell:
------------------
#num_docs = max(sparse_bow.index.get_level_values("doc_id"))
#num_types = max(sparse_bow.index.get_level_values("token_id"))
#sum_counts = sum(sparse_bow[0])

#header_string = str(num_docs) + " " + str(num_types) + " " + str(sum_counts) + "\n"

#with open("gb_plain.mm", 'w', encoding = "utf-8") as f:
#    pass

#with open("gb_plain.mm", 'a', encoding = "utf-8") as f:
#    f.write("%%MatrixMarket matrix coordinate real general\n")
#    f.write(header_string)
#    sparse_bow.to_csv( f, sep = ' ', header = None)

pre.save_bow_mm(sparse_bow)
------------------

TypeError: save_bow_mm() missing 1 required positional argument: 'output_path'


--------------------- >> end captured logging << ---------------------

Stacktrace

  File "/usr/lib/python3.5/unittest/case.py", line 59, in testPartExecutor
    yield
  File "/usr/lib/python3.5/unittest/case.py", line 601, in run
    testMethod()
  File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
    self.test(*self.arg)
  File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 20, in jupyter_integration_test
    stderr=STDOUT, universal_newlines=True)
  File "/usr/lib/python3.5/subprocess.py", line 316, in check_output
    **kwargs).stdout
  File "/usr/lib/python3.5/subprocess.py", line 398, in run
    output=stdout, stderr=stderr)
Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1
-------------------- >> begin captured logging << --------------------
root: ERROR: An error occurred while executing the following cell:
------------------
#num_docs = max(sparse_bow.index.get_level_values("doc_id"))
#num_types = max(sparse_bow.index.get_level_values("token_id"))
#sum_counts = sum(sparse_bow[0])

#header_string = str(num_docs) + " " + str(num_types) + " " + str(sum_counts) + "\n"

#with open("gb_plain.mm", 'w', encoding = "utf-8") as f:
#    pass

#with open("gb_plain.mm", 'a', encoding = "utf-8") as f:
#    f.write("%%MatrixMarket matrix coordinate real general\n")
#    f.write(header_string)
#    sparse_bow.to_csv( f, sep = ' ', header = None)

pre.save_bow_mm(sparse_bow)
------------------

TypeError: save_bow_mm() missing 1 required positional argument: 'output_path'


--------------------- >> end captured logging << ---------------------