Started by GitHub push by thvitt
Building remotely on <a href='/ci/computer/build3' class='jenkins-table__link model-link model-link--float'>build3</a> (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen
[ssh-agent] Looking for ssh-agent implementation...
[ssh-agent]   Exec ssh-agent (binary ssh-agent on a remote machine)
$ ssh-agent
SSH_AUTH_SOCK=/tmp/ssh-J8hAbNf6UY57/agent.17971
SSH_AGENT_PID=17973
[ssh-agent] Started.
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key)
[ssh-agent] Using credentials git
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key)
[ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de)
 &gt; /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 &gt; /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10
Fetching upstream changes from git://github.com/faustedition/faust-macrogen
 &gt; /usr/bin/git --version # timeout=10
using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de
 &gt; /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/*
 &gt; /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 &gt; /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision b205d9840af1cc0dcafebd36447dc4577bdc49db (refs/remotes/origin/master)
 &gt; /usr/bin/git config core.sparsecheckout # timeout=10
 &gt; /usr/bin/git checkout -f b205d9840af1cc0dcafebd36447dc4577bdc49db
Commit message: "Fixed logger names"
 &gt; /usr/bin/git rev-list --no-walk 52b6694bd426429e0b9576bf05e9dc3cf3a51099 # timeout=10
 &gt; /usr/bin/git remote # timeout=10
 &gt; /usr/bin/git submodule init # timeout=10
 &gt; /usr/bin/git submodule sync # timeout=10
 &gt; /usr/bin/git config --get remote.origin.url # timeout=10
 &gt; /usr/bin/git submodule init # timeout=10
 &gt; /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 &gt; /usr/bin/git config --get submodule.data.url # timeout=10
 &gt; /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10
 &gt; /usr/bin/git submodule update --init --recursive --remote data
$ bash -c "[ -d \$HOME/.pyenv ]"
$ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen &amp;&amp; env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2&gt;/dev/null || true"
$ bash -c "mkdir \$HOME/.pyenv.lock"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "rm -rf \$HOME/.pyenv.lock"
[faust-macrogen] $ /bin/sh -xe /tmp/jenkins4743773234579915282.sh
+ pipenv install
Installing dependencies from Pipfile.lock (8f5326)…
To activate this project's virtualenv, run the following:
 $ pipenv shell
+ pipenv run ./main.py
/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
  return f(*args, **kwds)
<span style="color: #C4A000;">WARNING  datings  Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight'</span>
<span style="color: #4E9A06;">INFO     datings  Reading data to build base graph ...</span>
<span style="color: #C4A000;">WARNING  uris     Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_)</span>
<span style="color: #C4A000;">WARNING  uris     Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_)</span>
<span style="color: #CC0000;">ERROR    datings  Absolute dating without a date:
&lt;date xmlns="<a href='http://www.faustedition.net/ns'>http://www.faustedition.net/ns</a>" xmlns:xsi="<a href='http://www.w3.org/2001/XMLSchema-instance'>http://www.w3.org/2001/XMLSchema-instance</a>"&gt;
      &lt;comment&gt;Über Rest der Handschrift keine Aussage über Datierung möglich&lt;/comment&gt;
      &lt;source uri="faust://bibliography/bohnenkamp1994"&gt;S.322&lt;/source&gt;
      &lt;item uri="faust://inscription/wa/2_I_H.10/i_uebrige"/&gt;
   &lt;/date&gt;
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:115</span>
<span style="color: #CC0000;">ERROR    datings  Absolute dating without a date:
&lt;date xmlns="<a href='http://www.faustedition.net/ns'>http://www.faustedition.net/ns</a>" xmlns:xsi="<a href='http://www.w3.org/2001/XMLSchema-instance'>http://www.w3.org/2001/XMLSchema-instance</a>"&gt;
      &lt;comment&gt;Über Rest der Handschrift keine Aussage über Datierung möglich&lt;/comment&gt;
      &lt;source uri="faust://bibliography/bohnenkamp1994"&gt;S.322&lt;/source&gt;
      &lt;item uri="faust://inscription/wa/2_I_H.10/i_v"/&gt;
   &lt;/date&gt;
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:121</span>
<span style="color: #CC0000;">ERROR    datings  Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict:
&lt;date xmlns="<a href='http://www.faustedition.net/ns'>http://www.faustedition.net/ns</a>" xmlns:xsi="<a href='http://www.w3.org/2001/XMLSchema-instance'>http://www.w3.org/2001/XMLSchema-instance</a>" notBefore="1827-12-25" notAfter="1817-12-25"&gt;
      &lt;comment&gt;Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . &lt;/comment&gt;
      &lt;source uri="faust://bibliography/gsa-datenbank"/&gt;
      &lt;item uri="faust://document/wa/2_I_H.f"/&gt;
   &lt;/date&gt;
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:663</span>
<span style="color: #4E9A06;">INFO     graph    Removing hertz and temp-syn</span>
<span style="color: #4E9A06;">INFO     graph    Extracted 5 subgraphs with conflicts</span>
<span style="color: #4E9A06;">INFO     graph    Calculating minimum feedback arc set for 5 subgraphs</span>
<span style="color: #D3D7CF;">DEBUG    graph    Calculating MFAS for a 2-node graph using ip, may take a while</span>
<span style="color: #D3D7CF;">DEBUG    graph    1 edges to remove</span>
<span style="color: #D3D7CF;">DEBUG    graph    Calculating MFAS for a 3-node graph using ip, may take a while</span>
<span style="color: #D3D7CF;">DEBUG    graph    2 edges to remove</span>
<span style="color: #D3D7CF;">DEBUG    graph    Calculating MFAS for a 4-node graph using ip, may take a while</span>
<span style="color: #D3D7CF;">DEBUG    graph    2 edges to remove</span>
<span style="color: #D3D7CF;">DEBUG    graph    Calculating MFAS for a 55-node graph using eades, may take a while</span>
<span style="color: #D3D7CF;">DEBUG    graph    11 edges to remove</span>
<span style="color: #D3D7CF;">DEBUG    graph    Calculating MFAS for a 693-node graph using eades, may take a while</span>
<span style="color: #D3D7CF;">DEBUG    graph    351 edges to remove</span>
<span style="color: #C4A000;">WARNING  graph    Found 19 self loops, will also remove those. Affected nodes: 2 III H.3a:1, 2 III H.3a:1, 2 III H.76, 2 III H.76, fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 , 2 III H.70, 2 III H.70, 2 III H.70, 2 II H.22, 2 II H.22, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.50c, 2 III H.50c</span>
<span style="color: #4E9A06;">INFO     graph    Marking 386 conflicting edges for deletion</span>
<span style="color: #4E9A06;">INFO     graph    Building DAG from remaining data</span>
<span style="color: #4E9A06;">INFO     graph    Removed 386 of the original 3146 edges</span>
<span style="color: #4E9A06;">INFO     graph    Augmenting refs with data from graphs</span>
<span style="color: #4E9A06;">INFO     graph    Creating sort order from DAG</span>
<span style="color: #4E9A06;">INFO     visualize Writing target/macrogenesis/help-pre.dot ...</span>
Traceback (most recent call last):
  File "./main.py", line 27, in &lt;module&gt;
    _main()
  File "./main.py", line 15, in _main
    report_help()
  File "/mnt/data/jenkins/workspace/faust-macrogen/report.py", line 369, in report_help
    write_dot(graph, str(target / f'help-{name}.dot'))
  File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 129, in write_dot
    agraph.write(dotfilename)
  File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1219, in write
    fh = self._get_fh(path, 'w')
  File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1506, in _get_fh
    fh = open(path, mode=mode)
FileNotFoundError: [Errno 2] No such file or directory: 'target/macrogenesis/help-pre.dot'
Build step 'Execute shell' marked build as failure
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 17973 killed;
[ssh-agent] Stopped.
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: FAILURE