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Started by GitHub push by MaxV92
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
 > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from git://github.com/DARIAH-DE/Topics
 > /usr/bin/git --version # timeout=10
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 2119bff66f46adff8f6a923ab1772247297a9bce (refs/remotes/origin/testing)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 2119bff66f46adff8f6a923ab1772247297a9bce
Commit message: "changed round to argument in document_topics"
 > /usr/bin/git rev-list --no-walk e93204436d306022682a81feeea128c03a488e70 # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda1471239507932583842.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages (10.0.1)
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting pytest (from -r requirements-dev.txt (line 4))
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Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 11))
  Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-install-jc8qaubk/nbsphinx
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Collecting bokeh>=0.12.6 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
Collecting metadata_toolbox (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
Collecting attrs>=17.4.0 (from pytest->-r requirements-dev.txt (line 4))
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Requirement not upgraded as not directly required: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages (from pytest->-r requirements-dev.txt (line 4)) (39.2.0)
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  Using cached https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl
Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/04/d1/c6616dd03701e7e2073f06d5c3b41b012256e42b72561f16a7bd86dd7b43/prompt_toolkit-1.0.15-py3-none-any.whl
Collecting widgetsnbextension~=3.2.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/ff/fa/64acc09fc845a6b2dc0724d6f3f81e829b778ed5e9a7559567b4f19a3f4b/widgetsnbextension-3.2.1-py2.py3-none-any.whl
Collecting Send2Trash (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/49/46/c3dc27481d1cc57b9385aff41c474ceb7714f7935b1247194adae45db714/Send2Trash-1.5.0-py3-none-any.whl
Collecting terminado>=0.8.1 (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/2e/20/a26211a24425923d46e1213b376a6ee60dc30bcdf1b0c345e2c3769deb1c/terminado-0.8.1-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10))
Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 11))
  Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/28/96/d8f0e77b3754ab1f66cdc03f81abbb0245a5e826c745301df97ecf9e9972/boto3-1.7.34-py2.py3-none-any.whl (128kB)
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/bd/b7/a88a67002b1185ed9a8e8a6ef15266728c2361fcb4f1d02ea331e4c7741d/boto-2.48.0-py2.py3-none-any.whl
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/e7/42/074192a165622e645ed4aeade63e76e56b3496a044569b3c6cae3a918352/jedi-0.12.0-py2.py3-none-any.whl
Collecting backcall (from ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/89/e6/b5a1de8b0cc4e07ca1b305a4fcc3f9806025c1b651ea302646341222f88b/pexpect-4.6.0-py2.py3-none-any.whl
Collecting pickleshare (from ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/9f/17/daa142fc9be6b76f26f24eeeb9a138940671490b91cb5587393f297c8317/pickleshare-0.7.4-py2.py3-none-any.whl
Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/a5/62/bbd2be0e7943ec8504b517e62bab011b4946e1258842bc159e5dfde15b96/html5lib-1.0.1-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl
Collecting ptyprocess; os_name != "nt" (from terminado>=0.8.1->notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/ff/4e/fa4a73ccfefe2b37d7b6898329e7dbcd1ac846ba3a3b26b294a78a3eb997/ptyprocess-0.5.2-py2.py3-none-any.whl
Collecting botocore<1.11.0,>=1.10.34 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/fc/80/abd1b4d0bd34d4fe3eeff41a1e4fec8be3cc23b214bd99052f536f0f9050/botocore-1.10.34-py2.py3-none-any.whl (4.3MB)
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/d7/14/2a0004d487464d120c9fb85313a75cd3d71a7506955be458eebfe19a6b1d/s3transfer-0.1.13-py2.py3-none-any.whl
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/b7/31/05c8d001f7f87f0f07289a5fc0fc3832e9a57f2dbd4d3b0fee70e0d51365/jmespath-0.9.3-py2.py3-none-any.whl
Collecting parso>=0.2.0 (from jedi>=0.10->ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/cd/3e/5908f9577dbd1e5df53e64349bfd11e46b726c1e4d8cd676bbe8aa4de316/parso-0.2.1-py2.py3-none-any.whl
Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl
Building wheels for collected packages: nbsphinx, regex
  Running setup.py bdist_wheel for nbsphinx: started
  Running setup.py bdist_wheel for nbsphinx: finished with status 'done'
  Stored in directory: /tmp/pip-ephem-wheel-cache-om107yme/wheels/a3/7b/ff/b71160a2e088926eb13abcf8e0cde94c0aa8400c67d3df57f5
  Running setup.py bdist_wheel for regex: started
  Running setup.py bdist_wheel for regex: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/6a/04/c6/09a611a33b120ba601d44fce3224cd1c8353bd941dfb11728e
Successfully built nbsphinx regex
Installing collected packages: attrs, atomicwrites, py, six, more-itertools, pluggy, pytest, coverage, pytest-cov, pyflakes, beautifulsoup4, parso, jedi, decorator, Pygments, backcall, simplegeneric, ipython-genutils, traitlets, ptyprocess, pexpect, wcwidth, prompt-toolkit, pickleshare, ipython, tornado, python-dateutil, pyzmq, jupyter-core, jupyter-client, ipykernel, jsonschema, nbformat, testpath, pandocfilters, entrypoints, webencodings, html5lib, bleach, MarkupSafe, Jinja2, mistune, nbconvert, urllib3, chardet, certifi, idna, requests, nbsmoke, qtconsole, jupyter-console, Send2Trash, terminado, notebook, widgetsnbextension, ipywidgets, jupyter, docutils, alabaster, snowballstemmer, sphinxcontrib-websupport, pyparsing, packaging, imagesize, pytz, babel, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, jmespath, botocore, s3transfer, boto3, boto, bz2file, smart-open, scipy, gensim, pbr, lda, lxml, kiwisolver, cycler, matplotlib, PyYAML, bokeh, parse, metadata-toolbox, dariah-topics
  Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Send2Trash-1.5.0 alabaster-0.7.10 atomicwrites-1.1.5 attrs-18.1.0 babel-2.6.0 backcall-0.1.0 beautifulsoup4-4.6.0 bleach-2.1.3 bokeh-0.12.16 boto-2.48.0 boto3-1.7.34 botocore-1.10.34 bz2file-0.98 certifi-2018.4.16 chardet-3.0.4 commonmark-0.5.4 coverage-4.5.1 cycler-0.10.0 dariah-topics decorator-4.3.0 docutils-0.14 entrypoints-0.2.3 gensim-3.4.0 html5lib-1.0.1 idna-2.6 imagesize-1.0.0 ipykernel-4.8.2 ipython-6.4.0 ipython-genutils-0.2.0 ipywidgets-7.2.1 jedi-0.12.0 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.3 jupyter-console-5.2.0 jupyter-core-4.4.0 kiwisolver-1.0.1 lda-1.0.5 lxml-4.2.1 matplotlib-2.2.2 metadata-toolbox-0.1.0.dev0 mistune-0.8.3 more-itertools-4.2.0 nbconvert-5.3.1 nbformat-4.4.0 nbsmoke-0.2.7 nbsphinx-0.3.3 notebook-5.5.0 numpy-1.14.4 packaging-17.1 pandas-0.23.0 pandocfilters-1.4.2 parse-1.8.4 parso-0.2.1 pbr-4.0.4 pexpect-4.6.0 pickleshare-0.7.4 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.3 pyflakes-2.0.0 pyparsing-2.2.0 pytest-3.6.1 pytest-cov-2.5.1 python-dateutil-2.7.3 pytz-2018.4 pyzmq-17.0.0 qtconsole-4.3.1 recommonmark-0.4.0 regex-2018.6.6 requests-2.18.4 s3transfer-0.1.13 scipy-1.1.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.7 snowballstemmer-1.2.1 sphinx-1.7.5 sphinxcontrib-websupport-1.1.0 terminado-0.8.1 testpath-0.3.1 tornado-5.0.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.2.1
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing dariah_topics.egg-info/PKG-INFO
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing requirements to dariah_topics.egg-info/requires.txt
writing top-level names to dariah_topics.egg-info/top_level.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
creating dariah_topics-1.0.0.dev0
creating dariah_topics-1.0.0.dev0/dariah_topics
creating dariah_topics-1.0.0.dev0/dariah_topics.egg-info
creating dariah_topics-1.0.0.dev0/test
copying files to dariah_topics-1.0.0.dev0...
copying README.md -> dariah_topics-1.0.0.dev0
copying setup.cfg -> dariah_topics-1.0.0.dev0
copying setup.py -> dariah_topics-1.0.0.dev0
copying dariah_topics/__init__.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/modeling.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/utils.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-1.0.0.dev0/test
Writing dariah_topics-1.0.0.dev0/setup.cfg
Creating tar archive
removing 'dariah_topics-1.0.0.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
copying dariah_topics/postprocessing.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/utils.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/modeling.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-1.0.0.dev0-py3.6.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-1.0.0.dev0.dist-info/WHEEL
creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-1.0.0.dev0-py3-none-any.whl' and adding '.' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/modeling.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/utils.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-1.0.0.dev0.dist-info/top_level.txt'
adding 'dariah_topics-1.0.0.dev0.dist-info/WHEEL'
adding 'dariah_topics-1.0.0.dev0.dist-info/METADATA'
adding 'dariah_topics-1.0.0.dev0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.0.dev' to '1.0.0.dev0'
  normalized_version,
+ pytest --nbsmoke-run
============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.6.1, py-1.5.3, pluggy-0.6.0
rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg
plugins: cov-2.5.1, nbsmoke-0.2.7
collected 57 items

dariah_topics/postprocessing.py ...........                              [ 19%]
dariah_topics/preprocessing.py ...........................               [ 66%]
dariah_topics/utils.py ......                                            [ 77%]
notebooks/IntroducingGensim.ipynb .                                      [ 78%]
notebooks/IntroducingLda.ipynb .                                         [ 80%]
notebooks/IntroducingMallet.ipynb .                                      [ 82%]
notebooks/Visualizations.ipynb .                                         [ 84%]
test/test_fuzzy_segmenting.py .........                                  [100%]

--- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ----

----------- coverage: platform linux, python 3.6.5-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml

=============================== warnings summary ===============================
dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_document_topics
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
    """

dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_topics
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
    """

dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._create_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._hapax_legomena_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._remove_features_from_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._stopwords_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.create_document_term_matrix
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_hapax_legomena
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_stopwords
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.remove_features
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

-- Docs: http://doc.pytest.org/en/latest/warnings.html
=================== 57 passed, 12 warnings in 213.66 seconds ===================
+ ./setup.py build_sphinx -a
running build_sphinx
Running Sphinx v1.7.5
loading pickled environment... done
[autosummary] generating autosummary for: README.md, docs/CONTRIBUTING.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst, notebooks/IntroducingGensim.ipynb, notebooks/IntroducingLda.ipynb, notebooks/IntroducingMallet.ipynb, notebooks/Visualizations.ipynb
Failed to import 'dariah_topics.doclist': no module named dariah_topics.doclist
Failed to import 'dariah_topics.meta': no module named dariah_topics.meta
Failed to import 'dariah_topics.mallet': no module named dariah_topics.mallet
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updating environment: 0 added, 7 changed, 0 removed
reading sources... [ 14%] docs/gen/dariah_topics.doclist
reading sources... [ 28%] docs/gen/dariah_topics.evaluation
reading sources... [ 42%] docs/gen/dariah_topics.mallet
reading sources... [ 57%] docs/gen/dariah_topics.meta
reading sources... [ 71%] docs/gen/dariah_topics.preprocessing
reading sources... [ 85%] docs/gen/dariah_topics.visualization
reading sources... [100%] index

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.0.dev' to '1.0.0.dev0'
  normalized_version,
WARNING: autodoc: failed to import module 'dariah_topics.doclist'; the following exception was raised:
No module named 'dariah_topics.doclist'
WARNING: autodoc: failed to import module 'dariah_topics.mallet'; the following exception was raised:
No module named 'dariah_topics.mallet'
WARNING: autodoc: failed to import module 'dariah_topics.meta'; the following exception was raised:
No module named 'dariah_topics.meta'
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_pathlist:12: WARNING: Inline literal start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_model:3: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:9: WARNING: Unknown interpreted text role "clas".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:10: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:11: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:12: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:13: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:14: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:15: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:16: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingLda'
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingGensim'
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingMallet'
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'demonstrator/README'
looking for now-outdated files... none found
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checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb: WARNING: document isn't included in any toctree
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/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/Visualizations.ipynb: WARNING: document isn't included in any toctree
done
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writing output... [ 73%] index
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<unknown>:14: WARNING: unknown document: /notebooks/introducinglda
<unknown>:15: WARNING: unknown document: /notebooks/introducingmallet
<unknown>:16: WARNING: unknown document: /notebooks/introducinggensim
/mnt/data/jenkins/workspace/DARIAH-Topics/docs/CONTRIBUTING.md: WARNING: Could not lex literal_block as "json". Highlighting skipped.
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/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:56: WARNING: unknown document: /notebooks/introducinglda
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:52: WARNING: unknown document: /notebooks/introducingmallet
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:55: WARNING: unknown document: /notebooks/introducinggensim
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:52: WARNING: unknown document: /notebooks/introducinggensim
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:55: WARNING: unknown document: /notebooks/introducinglda
generating indices... genindex py-modindex
highlighting module code... [ 33%] dariah_topics.evaluation
highlighting module code... [ 66%] dariah_topics.preprocessing
highlighting module code... [100%] dariah_topics.visualization

writing additional pages... search
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copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 34 warnings.

The HTML pages are in build/sphinx/html.
[DocLinks] Copying Documentation to 1 ...
Recording test results
[Cobertura] Publishing Cobertura coverage report...

[Cobertura] Publishing Cobertura coverage results...

[Cobertura] Cobertura coverage report found.

[Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@2e64c5f4[description=A Python library for topic modeling.,homepage=https://dariah-de.github.io/Topics,name=Topics,fork=true,size=42269,milestones={},language=Python,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Fri, 08 Jun 2018 13:04:31 GMT], ETag=[W/"9566aeab71a5864aebd0dffb71497067"], Last-Modified=[Mon, 04 Jun 2018 10:20:02 GMT], OkHttp-Received-Millis=[1528463071083], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1528463070875], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[E6AA:4C5D:14A0ECD:2E9CF6F:5B1A7EDE], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4984], X-RateLimit-Reset=[1528466257], X-Runtime-rack=[0.105263], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:2119bff) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/2119bff66f46adff8f6a923ab1772247297a9bce
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Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: 1.0
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[ci-game] evaluating rule: Changed number of compiler warnings
Finished: SUCCESS