Console Output
Started by upstream project "faust-data-trigger" build number 67
originally caused by:
Started by an SCM change
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen
[ssh-agent] Looking for ssh-agent implementation...
[ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine)
$ ssh-agent
SSH_AUTH_SOCK=/tmp/ssh-jgzFa4pLh7wp/agent.17058
SSH_AGENT_PID=17060
[ssh-agent] Started.
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4065821031797588973.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4065821031797588973.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4065821031797588973.key)
[ssh-agent] Using credentials git
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_1172302451084450810.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_1172302451084450810.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_1172302451084450810.key)
[ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de)
> /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10
Fetching upstream changes from git://github.com/faustedition/faust-macrogen
> /usr/bin/git --version # timeout=10
using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de
> /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/*
> /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision 0b2f0e20473412237153994159c42e7a30656b93 (refs/remotes/origin/master)
> /usr/bin/git config core.sparsecheckout # timeout=10
> /usr/bin/git checkout -f 0b2f0e20473412237153994159c42e7a30656b93
Commit message: "fixup! Ensure out directory is there"
> /usr/bin/git rev-list --no-walk 0b2f0e20473412237153994159c42e7a30656b93 # timeout=10
> /usr/bin/git remote # timeout=10
> /usr/bin/git submodule init # timeout=10
> /usr/bin/git submodule sync # timeout=10
> /usr/bin/git config --get remote.origin.url # timeout=10
> /usr/bin/git submodule init # timeout=10
> /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> /usr/bin/git config --get submodule.data.url # timeout=10
> /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10
> /usr/bin/git submodule update --init --recursive --remote data
$ bash -c "[ -d \$HOME/.pyenv ]"
$ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true"
$ bash -c "mkdir \$HOME/.pyenv.lock"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "rm -rf \$HOME/.pyenv.lock"
[faust-macrogen] $ /bin/sh -xe /tmp/jenkins7865730685756744939.sh
+ pipenv install
Installing dependencies from Pipfile.lock (8f5326)…
To activate this project's virtualenv, run the following:
$ pipenv shell
+ pipenv run ./main.py
/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
return f(*args, **kwds)
WARNING datings Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight'
INFO datings Reading data to build base graph ...
WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_)
WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_)
ERROR datings Absolute dating without a date:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment>
<source uri="faust://bibliography/bohnenkamp1994">S.322</source>
<item uri="faust://inscription/wa/2_I_H.10/i_uebrige"/>
</date>
at data/xml/macrogenesis/handschriftendatierung_i.xml:115
ERROR datings Absolute dating without a date:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment>
<source uri="faust://bibliography/bohnenkamp1994">S.322</source>
<item uri="faust://inscription/wa/2_I_H.10/i_v"/>
</date>
at data/xml/macrogenesis/handschriftendatierung_i.xml:121
ERROR datings Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" notBefore="1827-12-25" notAfter="1817-12-25">
<comment>Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . </comment>
<source uri="faust://bibliography/gsa-datenbank"/>
<item uri="faust://document/wa/2_I_H.f"/>
</date>
at data/xml/macrogenesis/handschriftendatierung_i.xml:663
INFO graph Removing hertz and temp-syn
INFO graph Extracted 5 subgraphs with conflicts
INFO graph Calculating minimum feedback arc set for 5 subgraphs
DEBUG graph Calculating MFAS for a 2-node graph using ip, may take a while
DEBUG graph 1 edges to remove
DEBUG graph Calculating MFAS for a 3-node graph using ip, may take a while
DEBUG graph 2 edges to remove
DEBUG graph Calculating MFAS for a 4-node graph using ip, may take a while
DEBUG graph 2 edges to remove
DEBUG graph Calculating MFAS for a 55-node graph using eades, may take a while
DEBUG graph 11 edges to remove
DEBUG graph Calculating MFAS for a 693-node graph using eades, may take a while
DEBUG graph 351 edges to remove
WARNING graph Found 19 self loops, will also remove those. Affected nodes: fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 , 2 II H.22, 2 II H.22, 2 III H.70, 2 III H.70, 2 III H.70, 2 III H.3a:1, 2 III H.3a:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.76, 2 III H.76, 2 III H.50c, 2 III H.50c
INFO graph Marking 386 conflicting edges for deletion
INFO graph Building DAG from remaining data
INFO graph Removed 386 of the original 3146 edges
INFO graph Augmenting refs with data from graphs
INFO graph Creating sort order from DAG
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Rendering: 0%| | 0/1021 [00:00<?, ? SVGs/s]
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Rendering: 36%|███▌ | 364/1021 [00:01<00:03, 186.75 SVGs/s]ERROR visualize Failed to render target/macrogenesis/2_III_H.59-graph.dot
Traceback (most recent call last):
File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file
graph.draw(resultfn, format='svg', prog='dot')
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw
data = self._run_prog(prog, args)
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog
warnings.warn(b"".join(errors), RuntimeWarning)
TypeError: cannot use a string pattern on a bytes-like object
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Rendering: 68%|██████▊ | 694/1021 [00:03<00:01, 178.73 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-050.dot
Traceback (most recent call last):
File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file
graph.draw(resultfn, format='svg', prog='dot')
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw
data = self._run_prog(prog, args)
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog
warnings.warn(b"".join(errors), RuntimeWarning)
TypeError: cannot use a string pattern on a bytes-like object
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Rendering: 72%|███████▏ | 736/1021 [00:04<00:01, 167.46 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-087.dot
Traceback (most recent call last):
File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file
graph.draw(resultfn, format='svg', prog='dot')
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw
data = self._run_prog(prog, args)
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog
warnings.warn(b"".join(errors), RuntimeWarning)
TypeError: cannot use a string pattern on a bytes-like object
Rendering: 73%|███████▎ | 747/1021 [00:04<00:01, 157.83 SVGs/s]
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Rendering: 95%|█████████▌| 974/1021 [00:08<00:00, 119.63 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-289.dot
Traceback (most recent call last):
File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file
graph.draw(resultfn, format='svg', prog='dot')
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw
data = self._run_prog(prog, args)
File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1335, in _run_prog
raise IOError(b"".join(errors))
OSError: b'Warning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.32" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.32" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.32" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\ndouble free or corruption (!prev)\n'
Rendering: 97%|█████████▋| 991/1021 [00:08<00:00, 120.16 SVGs/s]
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INFO visualize Rendered 1017 SVGs, 4 failed
+ cd target
+ rsync -a -u --chmod=ug+rwX,o+rX,Dg+s --omit-dir-times --info=del,stats2,copy,flist2 macrogenesis beta.faustedition.net:/var/www/dev/
sending incremental file list
rsync: failed to set permissions on "/var/www/dev/macrogenesis": Operation not permitted (1)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.12-graph.dot.6uVqV3" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.12-graph.svg.4QRoZI" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.12.php.tz6m3n" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.13-graph.dot.31sl72" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.13-graph.svg.rd6jbI" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.13.php.oF5ifn" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.14-graph.dot.GP9hj2" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.14-graph.svg.eTlhnH" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.14.php.26Tgrm" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.15-graph.dot.cWBgv1" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.15-graph.svg.ikAgzG" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.15.php.TlVgDl" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.16-graph.dot.shohH0" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.16-graph.svg.I4WhLF" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.16.php.WQSiPk" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.17-graph.dot.qiYjTZ" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.17-graph.svg.TtGlXE" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.17.php.lHsn1j" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.3-graph.dot.fGBp5Y" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.3-graph.svg.2dPr9D" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.3.php.qgqudj" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.4-graph.dot.uN5whY" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.4-graph.svg.Ir4zlD" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.4.php.eYtDpi" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.5-graph.dot.Gc0GtX" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.5-graph.svg.f9CKxC" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.1_H.5.php.dZnOBh" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_H-graph.dot.sHeSFW" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_H-graph.svg.5Q9gLB" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_H.php.Ya4tSg" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.1-graph.dot.lUhHZV" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.1-graph.svg.t6re7A" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.1.php.9Bopfg" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.10-graph.dot.MdOAnV" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.10-graph.svg.A0XZvA" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.10.php.M5MpEf" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.11-graph.dot.dGXPMU" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.11-graph.svg.XfUgVz" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.11.php.dypN3e" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.12-graph.dot.7hfkcU" failed: Permission denied (13)
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rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.13.php.6UH9Sd" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.14-graph.dot.QwnM1S" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.14-graph.svg.9Seray" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.14.php.gAEajd" failed: Permission denied (13)
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rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.16.php.wgRkac" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.17-graph.dot.DEejjR" failed: Permission denied (13)
rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.17-graph.svg.7JUlsw" failed: Permission denied (13)
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rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.18-graph.svg.B7I0Tv" failed: Permission denied (13)
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rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.21-graph.svg.AySygu" failed: Permission denied (13)
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rsync: mkstemp "/var/www/dev/macrogenesis/.2_III_H.22.php.tbCGS8" failed: Permission denied (13)
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Number of files: 2,695 (reg: 2,694, dir: 1)
Number of created files: 16 (reg: 16)
Number of deleted files: 0
Number of regular files transferred: 2,694
Total file size: 90,304,813 bytes
Total transferred file size: 90,304,813 bytes
Literal data: 85,720,618 bytes
Matched data: 4,584,195 bytes
File list size: 65,520
File list generation time: 0.001 seconds
File list transfer time: 0.000 seconds
Total bytes sent: 85,966,438
Total bytes received: 1,104,865
sent 85,966,438 bytes received 1,104,865 bytes 24,877,515.14 bytes/sec
total size is 90,304,813 speedup is 1.04
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1196) [sender=3.1.2]
Build step 'Execute shell' marked build as failure
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 17060 killed;
[ssh-agent] Stopped.
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: FAILURE
![[Jenkins]](/ci/static/5d841056/images/svgs/logo.svg){kind=logo}
