Started by GitHub push by severinsimmler Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 0ee16dd1aa44956d052fe3d52a8b38ccc4b2d918 (refs/remotes/origin/testing) Commit message: "Update demonstrator_test.py" > git config core.sparsecheckout # timeout=10 > git checkout -f 0ee16dd1aa44956d052fe3d52a8b38ccc4b2d918 > git rev-list 9e842822a9388ec8e142198aecd7d6de6c8862a7 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda1176479171829939175.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.20.3-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting lda>=1.0.5 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl Collecting lxml>=3.6.4 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached lxml-4.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting flask>=0.11.1 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached Flask-0.12.2-py2.py3-none-any.whl Collecting matplotlib>=1.5.3 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-2.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting bokeh>=0.12.6 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.4.1-cp35-cp35m-manylinux1_x86_64.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipywidgets-7.0.1-py2.py3-none-any.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Using cached notebook-5.1.0-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_console-5.2.0-py2.py3-none-any.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Using cached qtconsole-4.3.1-py2.py3-none-any.whl Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipykernel-4.6.1-py3-none-any.whl Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.2-py2.py3-none-any.whl Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Collecting six>=1.5.0 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached scipy-0.19.1-cp35-cp35m-manylinux1_x86_64.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pbr-3.1.1-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting Jinja2>=2.4 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached Jinja2-2.9.6-py2.py3-none-any.whl Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached Werkzeug-0.12.2-py2.py3-none-any.whl Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting pyparsing!=2.0.0,!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 (from matplotlib>=1.5.3->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached pyparsing-2.2.0-py2.py3-none-any.whl Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting ipython>=4.0.0; python_version >= "3.3" (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython-6.2.1-py3-none-any.whl Collecting traitlets>=4.3.1 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting nbformat>=4.2.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached widgetsnbextension-3.0.3-py2.py3-none-any.whl Collecting jupyter-core (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_core-4.3.0-py2.py3-none-any.whl Collecting jupyter-client (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_client-5.1.0-py2.py3-none-any.whl Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Collecting pygments (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached bleach-2.1.1-py2.py3-none-any.whl Collecting mistune>=0.7.4 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached mistune-0.7.4-py2.py3-none-any.whl Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached testpath-0.3.1-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting requests (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached requests-2.18.4-py2.py3-none-any.whl Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached boto-2.48.0-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached pexpect-4.2.1-py2.py3-none-any.whl Collecting decorator (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached decorator-4.1.2-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached jedi-0.11.0-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: setuptools>=18.5 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Collecting pickleshare (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat>=4.2.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached html5lib-1.0b10-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached certifi-2017.7.27.1-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached idna-2.6-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting parso==0.1.0 (from jedi>=0.10->ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached parso-0.1.0-py2.py3-none-any.whl Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Installing collected packages: nose, coverage, nosexcover, ptyprocess, pexpect, decorator, parso, jedi, simplegeneric, pygments, pickleshare, six, wcwidth, prompt-toolkit, ipython-genutils, traitlets, ipython, jsonschema, jupyter-core, nbformat, MarkupSafe, Jinja2, pyzmq, python-dateutil, jupyter-client, tornado, terminado, ipykernel, entrypoints, webencodings, html5lib, bleach, mistune, testpath, pandocfilters, nbconvert, notebook, widgetsnbextension, ipywidgets, jupyter-console, qtconsole, jupyter, pytz, numpy, pandas, regex, scipy, bz2file, certifi, idna, chardet, urllib3, requests, boto, smart-open, gensim, pbr, lda, lxml, itsdangerous, click, Werkzeug, flask, cycler, pyparsing, matplotlib, PyYAML, bokeh, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.9.6 MarkupSafe-1.0 PyYAML-3.12 Werkzeug-0.12.2 bleach-2.1.1 bokeh-0.12.9 boto-2.48.0 bz2file-0.98 certifi-2017.7.27.1 chardet-3.0.4 click-6.7 coverage-4.4.1 cycler-0.10.0 dariah-topics decorator-4.1.2 entrypoints-0.2.3 flask-0.12.2 gensim-3.0.0 html5lib-1.0b10 idna-2.6 ipykernel-4.6.1 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.1 itsdangerous-0.24 jedi-0.11.0 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.1.0 jupyter-console-5.2.0 jupyter-core-4.3.0 lda-1.0.5 lxml-4.0.0 matplotlib-2.0.2 mistune-0.7.4 nbconvert-5.3.1 nbformat-4.4.0 nose-1.3.7 nosexcover-1.0.11 notebook-5.1.0 numpy-1.13.3 pandas-0.20.3 pandocfilters-1.4.2 parso-0.1.0 pbr-3.1.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.15 ptyprocess-0.5.2 pygments-2.2.0 pyparsing-2.2.0 python-dateutil-2.6.1 pytz-2017.2 pyzmq-16.0.2 qtconsole-4.3.1 regex-2017.9.23 requests-2.18.4 scipy-0.19.1 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.3 terminado-0.6 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.3 + ./setup.py sdist bdist_wheel running sdist running egg_info writing top-level names to dariah_topics.egg-info/top_level.txt writing dariah_topics.egg-info/PKG-INFO writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing requirements to dariah_topics.egg-info/requires.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:351: UserWarning: Normalizing '0.3.0dev1' to '0.3.0.dev1' normalized_version, warning: check: missing required meta-data: url creating dariah_topics-0.3.0.dev1 creating dariah_topics-0.3.0.dev1/dariah_topics creating dariah_topics-0.3.0.dev1/dariah_topics.egg-info creating dariah_topics-0.3.0.dev1/test copying files to dariah_topics-0.3.0.dev1... copying README.md -> dariah_topics-0.3.0.dev1 copying setup.cfg -> dariah_topics-0.3.0.dev1 copying setup.py -> dariah_topics-0.3.0.dev1 copying dariah_topics/__init__.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/meta.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.3.0.dev1/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.3.0.dev1/test Writing dariah_topics-0.3.0.dev1/setup.cfg Creating tar archive removing 'dariah_topics-0.3.0.dev1' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.3.0.dev1-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.3.0.dev1.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.3.0.dev1-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/doclist.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/mallet.py' adding 'dariah_topics/meta.py' adding 'dariah_topics/model_creation.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/testing.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-0.3.0.dev1.dist-info/DESCRIPTION.rst' adding 'dariah_topics-0.3.0.dev1.dist-info/metadata.json' adding 'dariah_topics-0.3.0.dev1.dist-info/top_level.txt' adding 'dariah_topics-0.3.0.dev1.dist-info/WHEEL' adding 'dariah_topics-0.3.0.dev1.dist-info/METADATA' adding 'dariah_topics-0.3.0.dev1.dist-info/RECORD' + nosetests --cover-html .Exception ignored in: 'lda._lda.lgamma' ValueError: x must be strictly positive Exception ignored in: 'lda._lda.lgamma' ValueError: x must be strictly positive Exception ignored in: 'lda._lda.lgamma' ValueError: x must be strictly positive Exception ignored in: 'lda._lda.lgamma' ValueError: x must be strictly positive F..................... ====================================================================== FAIL: test_topic_modeling (demonstrator_test.DemonstratorTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/demonstrator_test.py", line 39, in test_topic_modeling resp = self.app.post('/upload', data=data) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 801, in post return self.open(*args, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/testing.py", line 127, in open follow_redirects=follow_redirects) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 764, in open response = self.run_wsgi_app(environ, buffered=buffered) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 677, in run_wsgi_app rv = run_wsgi_app(self.application, environ, buffered=buffered) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 884, in run_wsgi_app app_rv = app(environ, start_response) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1997, in __call__ return self.wsgi_app(environ, start_response) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1985, in wsgi_app response = self.handle_exception(e) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1540, in handle_exception reraise(exc_type, exc_value, tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/_compat.py", line 33, in reraise raise value File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1982, in wsgi_app response = self.full_dispatch_request() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1614, in full_dispatch_request rv = self.handle_user_exception(e) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1517, in handle_user_exception reraise(exc_type, exc_value, tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/_compat.py", line 33, in reraise raise value File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1612, in full_dispatch_request rv = self.dispatch_request() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1598, in dispatch_request return self.view_functions[rule.endpoint](**req.view_args) File "demonstrator/demonstrator.py", line 110, in upload_file topics = preprocessing.lda2dataframe(model, corpus_vocabulary) File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py", line 846, in lda2dataframe return pd.DataFrame(topics, index=['Topic ' + str(n+1) for n in range(len(topics))], columns=['Key ' + str(n+1) for n in range(num_keys)]) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pandas/core/frame.py", line 314, in __init__ arrays, columns = _to_arrays(data, columns, dtype=dtype) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pandas/core/frame.py", line 5639, in _to_arrays dtype=dtype) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pandas/core/frame.py", line 5696, in _list_to_arrays coerce_float=coerce_float) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/pandas/core/frame.py", line 5755, in _convert_object_array 'columns' % (len(columns), len(content))) AssertionError: 10 columns passed, passed data had 0 columns -------------------- >> begin captured stdout << --------------------- Accessing user input ... 1 text files. 1 topics. 1 iterations. Using external stopwords list. Tokenizing ... Accessing external stopwords list ... Determining hapax legomena ... Removing stopwords and hapax legomena from corpus ... Accessing corpus vocabulary ... LDA training ... Accessing topics ... --------------------- >> end captured stdout << ---------------------- -------------------- >> begin captured logging << -------------------- preprocessing: INFO: Finding hapax legomena ... preprocessing: INFO: Removing features ... lda: INFO: n_documents: 1 lda: INFO: vocab_size: 0 lda: INFO: n_words: 0 lda: INFO: n_topics: 1 lda: INFO: n_iter: 1 lda: WARNING: all zero row in document-term matrix found lda: INFO: <0> log likelihood: 0 lda: INFO: <0> log likelihood: 0 --------------------- >> end captured logging << --------------------- Name Stmts Miss Cover ---------------------------------------------------- dariah_topics/__init__.py 0 0 100% dariah_topics/doclist.py 93 6 94% dariah_topics/preprocessing.py 223 17 92% dariah_topics/visualization.py 176 93 47% ---------------------------------------------------- TOTAL 492 116 76% ---------------------------------------------------------------------- Ran 23 tests in 66.594s FAILED (failures=1) Build step 'Virtualenv Builder' marked build as failure Recording test results [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. [Set GitHub commit status (universal)] ERROR on repos [GHRepository@274826da[description=A python library for topic modeling.,homepage=,name=Topics,license=,fork=true,size=186478,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:0ee16dd) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/0ee16dd1aa44956d052fe3d52a8b38ccc4b2d918 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: FAILURE