Started by GitHub push by severinsimmler
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
Cloning the remote Git repository
Cloning repository https://github.com/DARIAH-DE/Topics
 > git init /mnt/data/jenkins/workspace/DARIAH-Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
 > git --version # timeout=10
using GIT_ASKPASS to set credentials 
 > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
using GIT_ASKPASS to set credentials 
 > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision e9ff28bc49db79107dbd042026a028fb806849da (refs/remotes/origin/testing)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f e9ff28bc49db79107dbd042026a028fb806849da
Commit message: "Less iterations in doctest and fix #34"
 > git rev-list 1bd46524b0c465e7e945a75fabb568bc1c376f49 # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda6754813810556242414.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting pytest (from -r requirements-dev.txt (line 4))
  Using cached pytest-3.3.1-py2.py3-none-any.whl
Collecting pytest-cov (from -r requirements-dev.txt (line 5))
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Collecting pytest-nbsmoke (from -r requirements-dev.txt (line 6))
  Using cached pytest_nbsmoke-0.1.5-py2.py3-none-any.whl
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  Using cached jupyter-1.0.0-py2.py3-none-any.whl
Collecting sphinx (from -r requirements-dev.txt (line 10))
  Using cached Sphinx-1.6.5-py2.py3-none-any.whl
Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 11))
  Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-build-go4wsvma/nbsphinx
Collecting recommonmark (from -r requirements-dev.txt (line 12))
  Using cached recommonmark-0.4.0-py2.py3-none-any.whl
Collecting pyinstaller (from -r requirements-dev.txt (line 15))
Collecting pandas>=0.19.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
  Using cached pandas-0.21.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting regex>=2017.01.14 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting gensim>=0.13.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
  Using cached gensim-3.2.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting lda>=1.0.5 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting numpy>=1.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting matplotlib>=1.5.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting bokeh>=0.12.6 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting wordcloud>=1.3.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->-r requirements-dev.txt (line 4))
Collecting coverage>=3.7.1 (from pytest-cov->-r requirements-dev.txt (line 5))
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Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 10))
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Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 10))
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Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 10))
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Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 10))
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Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 10))
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Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 10))
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Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 10))
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Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 11))
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Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 12))
Collecting pefile>=2017.8.1 (from pyinstaller->-r requirements-dev.txt (line 15))
Collecting macholib>=1.8 (from pyinstaller->-r requirements-dev.txt (line 15))
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Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
  Using cached python_dateutil-2.6.1-py2.py3-none-any.whl
Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting pillow (from wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting jupyter-core (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Using cached jsonschema-2.6.0-py2.py3-none-any.whl
Collecting ipython-genutils (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting pyzmq>=13 (from jupyter-client->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting entrypoints>=0.2.2 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting pandocfilters>=1.4.1 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting mistune>=0.7.4 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting ipython>=4.0.0 (from ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9))
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Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Using cached prompt_toolkit-1.0.15-py3-none-any.whl
Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 9))
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Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
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Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
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Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
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Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
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Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10))
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Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
  Downloading boto3-1.5.4-py2.py3-none-any.whl (128kB)
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting olefile (from pillow->wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Using cached html5lib-1.0.1-py2.py3-none-any.whl
Collecting pickleshare (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Using cached pickleshare-0.7.4-py2.py3-none-any.whl
Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Using cached pexpect-4.3.1-py2.py3-none-any.whl
Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Using cached jedi-0.11.1-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Using cached wcwidth-0.1.7-py2.py3-none-any.whl
Collecting ptyprocess; os_name != "nt" (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached ptyprocess-0.5.2-py2.py3-none-any.whl
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting botocore<1.9.0,>=1.8.18 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
  Downloading botocore-1.8.18-py2.py3-none-any.whl (4.0MB)
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
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Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Collecting parso==0.1.1 (from jedi>=0.10->ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
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Installing collected packages: six, pluggy, attrs, py, pytest, coverage, pytest-cov, decorator, ipython-genutils, traitlets, jupyter-core, jsonschema, nbformat, pyflakes, pyzmq, python-dateutil, jupyter-client, Pygments, entrypoints, webencodings, html5lib, bleach, pandocfilters, testpath, mistune, MarkupSafe, Jinja2, nbconvert, pickleshare, ptyprocess, pexpect, simplegeneric, wcwidth, prompt-toolkit, parso, jedi, ipython, tornado, ipykernel, pytest-nbsmoke, terminado, notebook, widgetsnbextension, ipywidgets, jupyter-console, qtconsole, jupyter, imagesize, pytz, babel, alabaster, sphinxcontrib-websupport, chardet, urllib3, certifi, idna, requests, docutils, snowballstemmer, sphinx, nbsphinx, commonmark, recommonmark, future, pefile, altgraph, macholib, pyinstaller, numpy, pandas, regex, jmespath, botocore, s3transfer, boto3, bz2file, boto, smart-open, scipy, gensim, pbr, lda, lxml, itsdangerous, click, Werkzeug, flask, pyparsing, cycler, matplotlib, PyYAML, bokeh, olefile, pillow, wordcloud, dariah-topics
  Running setup.py install for nbsphinx: started
    Running setup.py install for nbsphinx: finished with status 'done'
  Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.13 alabaster-0.7.10 altgraph-0.15 attrs-17.3.0 babel-2.5.1 bleach-2.1.2 bokeh-0.12.13 boto-2.48.0 boto3-1.5.4 botocore-1.8.18 bz2file-0.98 certifi-2017.11.5 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.2 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 future-0.16.0 gensim-3.2.0 html5lib-1.0.1 idna-2.6 imagesize-0.7.1 ipykernel-4.7.0 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.5 itsdangerous-0.24 jedi-0.11.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.0 jupyter-console-5.2.0 jupyter-core-4.4.0 lda-1.0.5 lxml-4.1.1 macholib-1.9 matplotlib-2.1.1 mistune-0.8.3 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.18 notebook-5.2.2 numpy-1.13.3 olefile-0.44 pandas-0.21.1 pandocfilters-1.4.2 parso-0.1.1 pbr-3.1.1 pefile-2017.11.5 pexpect-4.3.1 pickleshare-0.7.4 pillow-4.3.0 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.2 pyflakes-1.6.0 pyinstaller-3.3.1 pyparsing-2.2.0 pytest-3.3.1 pytest-cov-2.5.1 pytest-nbsmoke-0.1.5 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.3 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.12.12 requests-2.18.4 s3transfer-0.1.12 scipy-1.0.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.5 snowballstemmer-1.2.1 sphinx-1.6.5 sphinxcontrib-websupport-1.0.1 terminado-0.8.1 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.8 wordcloud-1.3.1
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing requirements to dariah_topics.egg-info/requires.txt
writing dariah_topics.egg-info/PKG-INFO
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing top-level names to dariah_topics.egg-info/top_level.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
warning: check: missing required meta-data: url

creating dariah_topics-0.4.0.dev1
creating dariah_topics-0.4.0.dev1/dariah_topics
creating dariah_topics-0.4.0.dev1/dariah_topics.egg-info
creating dariah_topics-0.4.0.dev1/test
copying files to dariah_topics-0.4.0.dev1...
copying README.md -> dariah_topics-0.4.0.dev1
copying setup.cfg -> dariah_topics-0.4.0.dev1
copying setup.py -> dariah_topics-0.4.0.dev1
copying dariah_topics/__init__.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/doc_meta_list.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/doclist.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/mallet.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/meta.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-0.4.0.dev1/test
Writing dariah_topics-0.4.0.dev1/setup.cfg
creating dist
Creating tar archive
removing 'dariah_topics-0.4.0.dev1' (and everything under it)
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/dariah_topics
copying dariah_topics/postprocessing.py -> build/lib/dariah_topics
copying dariah_topics/preprocessing.py -> build/lib/dariah_topics
copying dariah_topics/visualization.py -> build/lib/dariah_topics
copying dariah_topics/doc_meta_list.py -> build/lib/dariah_topics
copying dariah_topics/doclist.py -> build/lib/dariah_topics
copying dariah_topics/meta.py -> build/lib/dariah_topics
copying dariah_topics/__init__.py -> build/lib/dariah_topics
copying dariah_topics/mallet.py -> build/lib/dariah_topics
copying dariah_topics/evaluation.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/doc_meta_list.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1-py3.5.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1.dist-info/WHEEL
creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.4.0.dev1-py3-none-any.whl' and adding '.' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/doc_meta_list.py'
adding 'dariah_topics/doclist.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/mallet.py'
adding 'dariah_topics/meta.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-0.4.0.dev1.dist-info/DESCRIPTION.rst'
adding 'dariah_topics-0.4.0.dev1.dist-info/metadata.json'
adding 'dariah_topics-0.4.0.dev1.dist-info/top_level.txt'
adding 'dariah_topics-0.4.0.dev1.dist-info/WHEEL'
adding 'dariah_topics-0.4.0.dev1.dist-info/METADATA'
adding 'dariah_topics-0.4.0.dev1.dist-info/RECORD'
+ pytest --nbsmoke-run
============================= test session starts ==============================
platform linux -- Python 3.5.3, pytest-3.3.1, py-1.5.2, pluggy-0.6.0
rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg
plugins: nbsmoke-0.1.5, cov-2.5.1
collected 61 items

IntroducingGensim.ipynb .                                                [  1%]
IntroducingLda.ipynb .                                                   [  3%]
IntroducingMallet.ipynb .                                                [  4%]
Visualizations.ipynb .                                                   [  6%]
dariah_topics/mallet.py ......                                           [ 16%]
dariah_topics/postprocessing.py ...........                              [ 34%]
dariah_topics/preprocessing.py ...........................               [ 78%]
dariah_topics/visualization.py ..                                        [ 81%]
test/demonstrator_test.py ..                                             [ 85%]
test/test_fuzzy_segmenting.py .........                                  [100%]

--- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ----

----------- coverage: platform linux, python 3.5.3-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml

=============================== warnings summary ===============================
dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._create_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._hapax_legomena_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._remove_features_from_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._stopwords_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.create_document_term_matrix
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_hapax_legomena
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_stopwords
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.remove_features
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

-- Docs: http://doc.pytest.org/en/latest/warnings.html
=================== 61 passed, 10 warnings in 147.80 seconds ===================
+ ./setup.py build_sphinx -a
running build_sphinx
creating /mnt/data/jenkins/workspace/DARIAH-Topics/build/sphinx
creating /mnt/data/jenkins/workspace/DARIAH-Topics/build/sphinx/doctrees
creating /mnt/data/jenkins/workspace/DARIAH-Topics/build/sphinx/html
Running Sphinx v1.6.5
loading pickled environment... not yet created
[autosummary] generating autosummary for: IntroducingGensim.ipynb, IntroducingLda.ipynb, IntroducingMallet.ipynb, README.md, Visualizations.ipynb, demonstrator/README.md, docs/CONTRIBUTING.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst
'pattern' package not found; tag filters are not available for English
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loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv...
loading intersphinx inventory from http://docs.python.org/3/objects.inv...
intersphinx inventory has moved: http://docs.python.org/3/objects.inv -> https://docs.python.org/3/objects.inv
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updating environment: 16 added, 0 changed, 0 removed
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reading sources... [100%] index

/mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:848: WARNING: Title level inconsistent:

Path to MALLET folder
^^^^^^^^^^^^^^^^^^^^^
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.with_segment_files:12: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.Mallet.train_topics:56: WARNING: Definition list ends without a blank line; unexpected unindent.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.forall:8: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.forall:8: WARNING: Inline emphasis start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.forall:16: WARNING: Definition list ends without a blank line; unexpected unindent.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.forall:8: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.forall:8: WARNING: Inline emphasis start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.forall:16: WARNING: Definition list ends without a blank line; unexpected unindent.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_pathlist:12: WARNING: Inline literal start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_model:3: WARNING: Unknown interpreted text role "module".
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/Visualizations.ipynb: WARNING: document isn't included in any toctree
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writing output... [100%] index

/mnt/data/jenkins/workspace/DARIAH-Topics/docs/CONTRIBUTING.md: WARNING: Could not lex literal_block as "json". Highlighting skipped.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.full_path:: WARNING: 'any' reference target not found: Path
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.full_path:10: WARNING: 'any' reference target not found: Path()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.get_docs:6: WARNING: 'any' reference target not found: _get_item(self, index)
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.full_path:: WARNING: 'any' reference target not found: Path
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.full_path:10: WARNING: 'any' reference target not found: Path()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.with_segment_files:5: WARNING: 'any' reference target not found: strings.Formatter
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/evaluation.py:docstring of dariah_topics.evaluation.read_dictionary:4: WARNING: 'any' reference target not found: create_dictionary()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/evaluation.py:docstring of dariah_topics.evaluation.read_sparse_bow:4: WARNING: 'any' reference target not found: create_sparse_bow()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.Mallet.import_tokenized_corpus:: WARNING: 'any' reference target not found: tokenized_document
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.Mallet.import_tokenized_corpus:: WARNING: 'any' reference target not found: tokenized_corpus
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.Mallet.import_tokenized_corpus:: WARNING: 'any' reference target not found: replacements_files
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:3: WARNING: 'any' reference target not found: documents
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:7: WARNING: more than one target found for 'any' cross-reference 'segments': could be :py:meth: or :py:meth:
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/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:3: WARNING: 'any' reference target not found: documents
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:7: WARNING: more than one target found for 'any' cross-reference 'segments': could be :py:meth: or :py:meth:
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:7: WARNING: 'any' reference target not found: segments=True
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/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: _
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: author
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: title
generating indices... genindex py-modindex
highlighting module code... [ 16%] dariah_topics.meta
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writing additional pages... search
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copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 35 warnings.
[DocLinks] Copying Documentation to 1 ...
Recording test results
[Cobertura] Publishing Cobertura coverage report...

[Cobertura] Publishing Cobertura coverage results...

[Cobertura] Cobertura coverage report found.

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Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/e9ff28bc49db79107dbd042026a028fb806849da
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: 1.0
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: SUCCESS