Started by GitHub push by MHuberFaust Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from git://github.com/DARIAH-DE/Topics > /usr/bin/git --version # timeout=10 using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > /usr/bin/git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > /usr/bin/git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision e0a3112d0f6b946a976a7b98922fa55319f46ccf (refs/remotes/origin/testing) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f e0a3112d0f6b946a976a7b98922fa55319f46ccf Commit message: "updated README - Example" > /usr/bin/git rev-list --no-walk 84d9fb37240692ec9aed3faa25759515884e2f2e # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda2128780338168138886.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (10.0.1) + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting pytest (from -r requirements-dev.txt (line 4)) Downloading https://files.pythonhosted.org/packages/77/64/3a76f6fbb0f392d60c5960f2b2fbad8c2b802dada87ca6d1b99c0083a929/pytest-3.6.3-py2.py3-none-any.whl (195kB) Collecting pytest-cov (from -r requirements-dev.txt (line 5)) Using cached https://files.pythonhosted.org/packages/30/7d/7f6a78ae44a1248ee28cc777586c18b28a1df903470e5d34a6e25712b8aa/pytest_cov-2.5.1-py2.py3-none-any.whl Collecting nbsmoke (from -r requirements-dev.txt (line 6)) Using cached 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dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl Collecting pluggy<0.7,>=0.5 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/ba/65/ded3bc40bbf8d887f262f150fbe1ae6637765b5c9534bd55690ed2c0b0f7/pluggy-0.6.0-py3-none-any.whl Collecting attrs>=17.4.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/41/59/cedf87e91ed541be7957c501a92102f9cc6363c623a7666d69d51c78ac5b/attrs-18.1.0-py2.py3-none-any.whl Collecting atomicwrites>=1.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/0a/e8/cd6375e7a59664eeea9e1c77a766eeac0fc3083bb958c2b41ec46b95f29c/atomicwrites-1.1.5-py2.py3-none-any.whl Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/f3/bd/83369ff2dee18f22f27d16b78dd651e8939825af5f8b0b83c38729069962/py-1.5.4-py2.py3-none-any.whl Collecting more-itertools>=4.0.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/85/40/90c3b0393e12b9827381004224de8814686e3d7182f9d4182477f600826d/more_itertools-4.2.0-py3-none-any.whl Requirement not upgraded as not directly required: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->-r requirements-dev.txt (line 4)) (39.2.0) Collecting coverage>=3.7.1 (from pytest-cov->-r requirements-dev.txt (line 5)) Using cached https://files.pythonhosted.org/packages/2c/c0/8047b7cbbcdbd7d21f8d68126196b7915da892c5af3d1a99dba082d33ec0/coverage-4.5.1-cp35-cp35m-manylinux1_x86_64.whl Collecting nbformat (from nbsmoke->-r requirements-dev.txt (line 6)) Using cached 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jupyter-core (from nbformat->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/1d/44/065d2d7bae7bebc06f1dd70d23c36da8c50c0f08b4236716743d706762a8/jupyter_core-4.4.0-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl Collecting ipython>=4.0.0 (from ipykernel->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/b1/7f/91d50f28af3e3a24342561983a7857e399ce24093876e6970b986a0b6677/ipython-6.4.0-py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/4a/9c/c736101a42da5947985ff297c2837795f55a1c016cebcc3b49f31ce75c67/pyzmq-17.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting certifi>=2017.4.17 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl Collecting urllib3<1.24,>=1.21.1 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl Collecting idna<2.8,>=2.5 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/4b/2a/0276479a4b3caeb8a8c1af2f8e4355746a97fab05a372e4a2c6a6b876165/idna-2.7-py2.py3-none-any.whl Collecting testpath (from 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/tmp/pip-ephem-wheel-cache-5rx59gcj/wheels/a3/7b/ff/b71160a2e088926eb13abcf8e0cde94c0aa8400c67d3df57f5 Successfully built nbsphinx Installing collected packages: six, pluggy, attrs, atomicwrites, py, more-itertools, pytest, coverage, pytest-cov, ipython-genutils, decorator, traitlets, jupyter-core, jsonschema, nbformat, simplegeneric, Pygments, ptyprocess, pexpect, parso, jedi, pickleshare, backcall, wcwidth, prompt-toolkit, ipython, pyzmq, python-dateutil, tornado, jupyter-client, ipykernel, certifi, chardet, urllib3, idna, requests, pyflakes, testpath, pandocfilters, webencodings, html5lib, bleach, mistune, MarkupSafe, Jinja2, entrypoints, nbconvert, beautifulsoup4, nbsmoke, qtconsole, Send2Trash, terminado, notebook, widgetsnbextension, ipywidgets, jupyter-console, jupyter, docutils, imagesize, alabaster, sphinxcontrib-websupport, pytz, babel, pyparsing, packaging, snowballstemmer, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, scipy, jmespath, botocore, s3transfer, boto3, bz2file, boto, smart-open, gensim, pbr, lda, lxml, cycler, kiwisolver, matplotlib, PyYAML, bokeh, parse, metadata-toolbox, cophi-toolbox, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Send2Trash-1.5.0 alabaster-0.7.11 atomicwrites-1.1.5 attrs-18.1.0 babel-2.6.0 backcall-0.1.0 beautifulsoup4-4.6.0 bleach-2.1.3 bokeh-0.13.0 boto-2.48.0 boto3-1.7.50 botocore-1.10.50 bz2file-0.98 certifi-2018.4.16 chardet-3.0.4 commonmark-0.5.4 cophi-toolbox-0.1.1.dev0 coverage-4.5.1 cycler-0.10.0 dariah-topics decorator-4.3.0 docutils-0.14 entrypoints-0.2.3 gensim-3.4.0 html5lib-1.0.1 idna-2.7 imagesize-1.0.0 ipykernel-4.8.2 ipython-6.4.0 ipython-genutils-0.2.0 ipywidgets-7.2.1 jedi-0.12.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.3 jupyter-console-5.2.0 jupyter-core-4.4.0 kiwisolver-1.0.1 lda-1.0.5 lxml-4.2.3 matplotlib-2.2.2 metadata-toolbox-0.1.0.dev0 mistune-0.8.3 more-itertools-4.2.0 nbconvert-5.3.1 nbformat-4.4.0 nbsmoke-0.2.7 nbsphinx-0.3.3 notebook-5.5.0 numpy-1.14.5 packaging-17.1 pandas-0.23.1 pandocfilters-1.4.2 parse-1.8.4 parso-0.3.0 pbr-4.1.0 pexpect-4.6.0 pickleshare-0.7.4 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.6.0 py-1.5.4 pyflakes-2.0.0 pyparsing-2.2.0 pytest-3.6.3 pytest-cov-2.5.1 python-dateutil-2.7.3 pytz-2018.5 pyzmq-17.0.0 qtconsole-4.3.1 recommonmark-0.4.0 regex-2018.6.21 requests-2.19.1 s3transfer-0.1.13 scipy-1.1.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.6.0 snowballstemmer-1.2.1 sphinx-1.7.5 sphinxcontrib-websupport-1.1.0 terminado-0.8.1 testpath-0.3.1 tornado-5.0.2 traitlets-4.3.2 urllib3-1.23 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.2.1 + ./setup.py sdist bdist_wheel running sdist running egg_info writing dariah_topics.egg-info/PKG-INFO writing requirements to dariah_topics.egg-info/requires.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing top-level names to dariah_topics.egg-info/top_level.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check creating dariah_topics-1.0.2.dev0 creating dariah_topics-1.0.2.dev0/dariah_topics creating dariah_topics-1.0.2.dev0/dariah_topics.egg-info creating dariah_topics-1.0.2.dev0/test copying files to dariah_topics-1.0.2.dev0... copying README.md -> dariah_topics-1.0.2.dev0 copying setup.cfg -> dariah_topics-1.0.2.dev0 copying setup.py -> dariah_topics-1.0.2.dev0 copying dariah_topics/__init__.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/modeling.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/postprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/utils.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-1.0.2.dev0/test Writing dariah_topics-1.0.2.dev0/setup.cfg Creating tar archive removing 'dariah_topics-1.0.2.dev0' (and everything under it) running bdist_wheel running build running build_py copying dariah_topics/postprocessing.py -> build/lib/dariah_topics installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/modeling.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/utils.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-1.0.2.dev0-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/modeling.py' adding 'dariah_topics/postprocessing.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/utils.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-1.0.2.dev0.dist-info/top_level.txt' adding 'dariah_topics-1.0.2.dev0.dist-info/WHEEL' adding 'dariah_topics-1.0.2.dev0.dist-info/METADATA' adding 'dariah_topics-1.0.2.dev0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.2.dev' to '1.0.2.dev0' normalized_version, + pytest --nbsmoke-run ============================= test session starts ============================== platform linux -- Python 3.5.3, pytest-3.6.3, py-1.5.4, pluggy-0.6.0 rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg plugins: cov-2.5.1, nbsmoke-0.2.7 collected 57 items dariah_topics/postprocessing.py ........... [ 19%] dariah_topics/preprocessing.py ........................... [ 66%] dariah_topics/utils.py ...... [ 77%] notebooks/IntroducingGensim.ipynb . [ 78%] notebooks/IntroducingLda.ipynb . [ 80%] notebooks/IntroducingMallet.ipynb . [ 82%] notebooks/Visualizations.ipynb . [ 84%] test/test_fuzzy_segmenting.py ......... [100%] --- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ---- ----------- coverage: platform linux, python 3.5.3-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml =============================== warnings summary =============================== dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_document_topics /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead. """ dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_topics /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead. """ dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) -- Docs: http://doc.pytest.org/en/latest/warnings.html ==================== 57 passed, 4 warnings in 62.89 seconds ==================== + ./setup.py build_sphinx -a running build_sphinx Running Sphinx v1.7.5 loading pickled environment... done [autosummary] generating autosummary for: README.md, docs/CONTRIBUTING.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst, notebooks/IntroducingGensim.ipynb, notebooks/IntroducingLda.ipynb, notebooks/IntroducingMallet.ipynb, notebooks/Visualizations.ipynb Failed to import 'dariah_topics.doclist': no module named dariah_topics.doclist Failed to import 'dariah_topics.mallet': no module named dariah_topics.mallet Failed to import 'dariah_topics.meta': no module named dariah_topics.meta building [mo]: all of 0 po files building [html]: all source files updating environment: 0 added, 8 changed, 0 removed reading sources... [ 12%] README reading sources... [ 25%] docs/gen/dariah_topics.doclist reading sources... [ 37%] docs/gen/dariah_topics.evaluation reading sources... [ 50%] docs/gen/dariah_topics.mallet reading sources... [ 62%] docs/gen/dariah_topics.meta reading sources... [ 75%] docs/gen/dariah_topics.preprocessing reading sources... [ 87%] docs/gen/dariah_topics.visualization reading sources... [100%] index /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.2.dev' to '1.0.2.dev0' normalized_version, WARNING: autodoc: failed to import module 'dariah_topics.doclist'; the following exception was raised: No module named 'dariah_topics.doclist' WARNING: autodoc: failed to import module 'dariah_topics.mallet'; the following exception was raised: No module named 'dariah_topics.mallet' WARNING: autodoc: failed to import module 'dariah_topics.meta'; the following exception was raised: No module named 'dariah_topics.meta' /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_files:12: WARNING: Inline literal start-string without end-string. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_model:3: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:9: WARNING: Unknown interpreted text role "clas". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:10: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:11: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:12: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:13: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:14: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:15: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:16: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingLda' /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingGensim' /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingMallet' /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'demonstrator/README' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/Visualizations.ipynb: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 6%] README writing output... [ 13%] docs/CONTRIBUTING writing output... [ 20%] docs/gen/dariah_topics writing output... [ 26%] docs/gen/dariah_topics.doclist writing output... [ 33%] docs/gen/dariah_topics.evaluation writing output... [ 40%] docs/gen/dariah_topics.mallet writing output... [ 46%] docs/gen/dariah_topics.meta writing output... [ 53%] docs/gen/dariah_topics.preprocessing writing output... [ 60%] docs/gen/dariah_topics.visualization writing output... [ 66%] docs/gen/modules writing output... [ 73%] index writing output... [ 80%] notebooks/IntroducingGensim writing output... [ 86%] notebooks/IntroducingLda writing output... [ 93%] notebooks/IntroducingMallet writing output... [100%] notebooks/Visualizations :14: WARNING: unknown document: /notebooks/introducinglda :15: WARNING: unknown document: /notebooks/introducingmallet :16: WARNING: unknown document: /notebooks/introducinggensim /mnt/data/jenkins/workspace/DARIAH-Topics/docs/CONTRIBUTING.md: WARNING: Could not lex literal_block as "json". Highlighting skipped. /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:53: WARNING: unknown document: /notebooks/introducingmallet /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:56: WARNING: unknown document: /notebooks/introducinglda /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:52: WARNING: unknown document: /notebooks/introducingmallet /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:55: WARNING: unknown document: /notebooks/introducinggensim /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:52: WARNING: unknown document: /notebooks/introducinggensim /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:55: WARNING: unknown document: /notebooks/introducinglda generating indices... genindex py-modindex highlighting module code... [ 33%] dariah_topics.evaluation highlighting module code... [ 66%] dariah_topics.preprocessing highlighting module code... [100%] dariah_topics.visualization writing additional pages... search copying images... [ 12%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_24_0.png copying images... [ 25%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingGensim_53_0.png copying images... [ 37%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingLda_58_0.png copying images... [ 50%] docs/images/dariah-de_logo.png copying images... [ 62%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_22_0.png copying images... [ 75%] docs/images/bmbf_logo.png copying images... [ 87%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_20_0.png copying images... [100%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingMallet_62_0.png copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 34 warnings. The HTML pages are in build/sphinx/html. [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. 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