Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-5FcKWGfP49iS/agent.18752 SSH_AGENT_PID=18754 [ssh-agent] Started. $ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4754014890825170119.key Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4754014890825170119.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4754014890825170119.key) [ssh-agent] Using credentials git $ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_3353939274975636398.key Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_3353939274975636398.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_3353939274975636398.key) [ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de) > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10 Fetching upstream changes from git://github.com/faustedition/faust-macrogen > /usr/bin/git --version # timeout=10 using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de > /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/* > /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10 Checking out Revision 0b2f0e20473412237153994159c42e7a30656b93 (refs/remotes/origin/master) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 0b2f0e20473412237153994159c42e7a30656b93 Commit message: "fixup! Ensure out directory is there" > /usr/bin/git rev-list --no-walk b205d9840af1cc0dcafebd36447dc4577bdc49db # timeout=10 > /usr/bin/git remote # timeout=10 > /usr/bin/git submodule init # timeout=10 > /usr/bin/git submodule sync # timeout=10 > /usr/bin/git config --get remote.origin.url # timeout=10 > /usr/bin/git submodule init # timeout=10 > /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > /usr/bin/git config --get submodule.data.url # timeout=10 > /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10 > /usr/bin/git submodule update --init --recursive --remote data $ bash -c "[ -d \$HOME/.pyenv ]" $ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true" $ bash -c "mkdir \$HOME/.pyenv.lock" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "rm -rf \$HOME/.pyenv.lock" [faust-macrogen] $ /bin/sh -xe /tmp/jenkins5742407049754562273.sh + pipenv install Installing dependencies from Pipfile.lock (8f5326)… To activate this project's virtualenv, run the following: $ pipenv shell + pipenv run ./main.py /mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88 return f(*args, **kwds) WARNING datings Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight' INFO datings Reading data to build base graph ... WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_) WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_) ERROR datings Absolute dating without a date: Über Rest der Handschrift keine Aussage über Datierung möglich S.322 at data/xml/macrogenesis/handschriftendatierung_i.xml:115 ERROR datings Absolute dating without a date: Über Rest der Handschrift keine Aussage über Datierung möglich S.322 at data/xml/macrogenesis/handschriftendatierung_i.xml:121 ERROR datings Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict: Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . at data/xml/macrogenesis/handschriftendatierung_i.xml:663 INFO graph Removing hertz and temp-syn INFO graph Extracted 5 subgraphs with conflicts INFO graph Calculating minimum feedback arc set for 5 subgraphs DEBUG graph Calculating MFAS for a 2-node graph using ip, may take a while DEBUG graph 1 edges to remove DEBUG graph Calculating MFAS for a 3-node graph using ip, may take a while DEBUG graph 2 edges to remove DEBUG graph Calculating MFAS for a 4-node graph using ip, may take a while DEBUG graph 2 edges to remove DEBUG graph Calculating MFAS for a 55-node graph using eades, may take a while DEBUG graph 11 edges to remove DEBUG graph Calculating MFAS for a 693-node graph using eades, may take a while DEBUG graph 351 edges to remove WARNING graph Found 19 self loops, will also remove those. Affected nodes: 2 III H.70, 2 III H.70, 2 III H.70, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 II H.22, 2 II H.22, 2 III H.3a:1, 2 III H.3a:1, 2 III H.50c, 2 III H.50c, 2 III H.76, 2 III H.76, fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 INFO graph Marking 386 conflicting edges for deletion INFO graph Building DAG from remaining data INFO graph Removed 386 of the original 3146 edges INFO graph Augmenting refs with data from graphs INFO graph Creating sort order from DAG INFO visualize Writing target/macrogenesis/help-pre.dot ... INFO visualize Writing target/macrogenesis/help-conflict.dot ... INFO visualize Writing target/macrogenesis/help-syn.dot ... INFO visualize Writing target/macrogenesis/help-dating.dot ... INFO visualize Writing target/macrogenesis/help-interval.dot ... INFO visualize Writing target/macrogenesis/help-when.dot ... INFO visualize Writing target/macrogenesis/wa.182.i_r_o-graph.dot ... 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INFO visualize Writing target/macrogenesis/conflict-324.dot ... INFO visualize Writing target/macrogenesis/conflict-325.dot ... INFO visualize Writing target/macrogenesis/conflict-326.dot ... INFO visualize Writing target/macrogenesis/conflict-327.dot ... INFO visualize Writing target/macrogenesis/conflict-328.dot ... INFO visualize Writing target/macrogenesis/conflict-329.dot ... INFO visualize Writing target/macrogenesis/conflict-330.dot ... INFO visualize Writing target/macrogenesis/conflict-331.dot ... INFO visualize Writing target/macrogenesis/conflict-332.dot ... INFO visualize Writing target/macrogenesis/conflict-333.dot ... INFO visualize Writing target/macrogenesis/conflict-334.dot ... INFO visualize Writing target/macrogenesis/conflict-335.dot ... INFO visualize Writing target/macrogenesis/conflict-336.dot ... INFO visualize Writing target/macrogenesis/conflict-337.dot ... INFO visualize Writing target/macrogenesis/conflict-338.dot ... INFO visualize Writing target/macrogenesis/conflict-339.dot ... INFO visualize Writing target/macrogenesis/conflict-340.dot ... INFO visualize Writing target/macrogenesis/conflict-341.dot ... INFO visualize Writing target/macrogenesis/conflict-342.dot ... INFO visualize Writing target/macrogenesis/conflict-343.dot ... INFO visualize Writing target/macrogenesis/conflict-344.dot ... INFO visualize Writing target/macrogenesis/conflict-345.dot ... INFO visualize Writing target/macrogenesis/conflict-346.dot ... INFO visualize Writing target/macrogenesis/conflict-347.dot ... INFO visualize Writing target/macrogenesis/conflict-348.dot ... INFO visualize Writing target/macrogenesis/conflict-349.dot ... INFO visualize Writing target/macrogenesis/conflict-350.dot ... INFO visualize Writing target/macrogenesis/conflict-351.dot ... INFO visualize Writing target/macrogenesis/conflict-352.dot ... INFO visualize Writing target/macrogenesis/conflict-353.dot ... INFO visualize Writing target/macrogenesis/conflict-354.dot ... INFO visualize Writing target/macrogenesis/conflict-355.dot ... INFO visualize Writing target/macrogenesis/conflict-356.dot ... INFO visualize Writing target/macrogenesis/conflict-357.dot ... INFO visualize Writing target/macrogenesis/conflict-358.dot ... INFO visualize Writing target/macrogenesis/conflict-359.dot ... INFO visualize Writing target/macrogenesis/conflict-360.dot ... INFO visualize Writing target/macrogenesis/conflict-361.dot ... INFO visualize Writing target/macrogenesis/conflict-362.dot ... INFO visualize Writing target/macrogenesis/conflict-363.dot ... INFO visualize Writing target/macrogenesis/conflict-364.dot ... INFO visualize Writing target/macrogenesis/conflict-365.dot ... INFO visualize Writing target/macrogenesis/conflict-366.dot ... INFO visualize Writing target/macrogenesis/conflict-367.dot ... INFO visualize Writing target/macrogenesis/conflict-368.dot ... INFO visualize Writing target/macrogenesis/conflict-369.dot ... Rendering: 0%| | 0/1021 [00:00 "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\ncorrupted size vs. prev_size\n' ERROR visualize Failed to render target/macrogenesis/conflict-070.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1335, in _run_prog raise IOError(b"".join(errors)) OSError: b'Warning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\ncorrupted size vs. prev_size\n' Rendering: 72%|███████▏ | 737/1021 [00:04<00:01, 157.91 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-071.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1335, in _run_prog raise IOError(b"".join(errors)) OSError: b'Warning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.26" -> "faust://document/faustedition/2_III_H.1". Something is probably seriously wrong.\ncorrupted size vs. prev_size\n' Rendering: 73%|███████▎ | 748/1021 [00:04<00:01, 155.41 SVGs/s] Rendering: 74%|███████▍ | 758/1021 [00:05<00:01, 147.63 SVGs/s] Rendering: 75%|███████▌ | 766/1021 [00:05<00:01, 143.43 SVGs/s] Rendering: 76%|███████▌ | 776/1021 [00:05<00:01, 142.54 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-130.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog warnings.warn(b"".join(errors), RuntimeWarning) TypeError: cannot use a string pattern on a bytes-like object Rendering: 77%|███████▋ | 784/1021 [00:05<00:01, 140.86 SVGs/s] Rendering: 78%|███████▊ | 796/1021 [00:05<00:01, 139.51 SVGs/s] Rendering: 79%|███████▊ | 804/1021 [00:05<00:01, 137.01 SVGs/s] Rendering: 79%|███████▉ | 811/1021 [00:05<00:01, 135.77 SVGs/s] Rendering: 81%|████████ | 824/1021 [00:06<00:01, 135.23 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-182.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog warnings.warn(b"".join(errors), RuntimeWarning) TypeError: cannot use a string pattern on a bytes-like object Rendering: 81%|████████▏ | 832/1021 [00:06<00:01, 134.01 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-170.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1335, in _run_prog raise IOError(b"".join(errors)) OSError: b'Warning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.28" -> "1825-04-06". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.28" -> "1825-04-06". Something is probably seriously wrong.\n' ERROR visualize Failed to render target/macrogenesis/conflict-171.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1335, in _run_prog raise IOError(b"".join(errors)) OSError: b'Warning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.28" -> "1825-04-06". Something is probably seriously wrong.\nWarning: Unable to reclaim box space in spline routing for edge "faust://document/faustedition/2_III_H.28" -> "1825-04-06". Something is probably seriously wrong.\n' Rendering: 82%|████████▏ | 840/1021 [00:06<00:01, 132.80 SVGs/s] Rendering: 83%|████████▎ | 848/1021 [00:06<00:01, 129.45 SVGs/s] Rendering: 84%|████████▎ | 855/1021 [00:06<00:01, 128.14 SVGs/s] Rendering: 84%|████████▍ | 862/1021 [00:06<00:01, 125.41 SVGs/s] Rendering: 86%|████████▌ | 873/1021 [00:06<00:01, 125.04 SVGs/s] Rendering: 86%|████████▌ | 880/1021 [00:07<00:01, 123.82 SVGs/s] Rendering: 87%|████████▋ | 887/1021 [00:07<00:01, 121.54 SVGs/s] Rendering: 88%|████████▊ | 896/1021 [00:07<00:01, 120.96 SVGs/s] Rendering: 88%|████████▊ | 903/1021 [00:07<00:00, 119.29 SVGs/s] Rendering: 89%|████████▉ | 909/1021 [00:07<00:00, 118.49 SVGs/s] Rendering: 90%|█████████ | 919/1021 [00:07<00:00, 118.17 SVGs/s] Rendering: 91%|█████████ | 929/1021 [00:07<00:00, 117.35 SVGs/s] Rendering: 92%|█████████▏| 936/1021 [00:08<00:00, 116.51 SVGs/s] Rendering: 93%|█████████▎| 953/1021 [00:08<00:00, 116.96 SVGs/s] Rendering: 95%|█████████▍| 966/1021 [00:08<00:00, 116.70 SVGs/s] Rendering: 96%|█████████▌| 979/1021 [00:08<00:00, 116.84 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-347.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog warnings.warn(b"".join(errors), RuntimeWarning) TypeError: cannot use a string pattern on a bytes-like object ERROR visualize Failed to render target/macrogenesis/conflict-349.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog warnings.warn(b"".join(errors), RuntimeWarning) TypeError: cannot use a string pattern on a bytes-like object ERROR visualize Failed to render target/macrogenesis/conflict-348.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog warnings.warn(b"".join(errors), RuntimeWarning) TypeError: cannot use a string pattern on a bytes-like object Rendering: 98%|█████████▊| 997/1021 [00:08<00:00, 117.19 SVGs/s]ERROR visualize Failed to render target/macrogenesis/conflict-353.dot Traceback (most recent call last): File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 140, in render_file graph.draw(resultfn, format='svg', prog='dot') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1474, in draw data = self._run_prog(prog, args) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog warnings.warn(b"".join(errors), RuntimeWarning) TypeError: cannot use a string pattern on a bytes-like object Rendering: 99%|█████████▉| 1013/1021 [00:08<00:00, 117.66 SVGs/s] Rendering: 100%|██████████| 1021/1021 [00:08<00:00, 117.29 SVGs/s] INFO visualize Rendered 1008 SVGs, 13 failed $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 18754 killed; [ssh-agent] Stopped. Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: SUCCESS