Console Output

Started by GitHub push by thvitt
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen
[ssh-agent] Looking for ssh-agent implementation...
[ssh-agent]   Exec ssh-agent (binary ssh-agent on a remote machine)
$ ssh-agent
SSH_AUTH_SOCK=/tmp/ssh-ZSoJPghlskPb/agent.6202
SSH_AGENT_PID=6204
[ssh-agent] Started.
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_5996365156253612455.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_5996365156253612455.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_5996365156253612455.key)
[ssh-agent] Using credentials git
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7483154566746350403.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7483154566746350403.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7483154566746350403.key)
[ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de)
 > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10
Fetching upstream changes from git://github.com/faustedition/faust-macrogen
 > /usr/bin/git --version # timeout=10
using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de
 > /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision 384b0f216aafbe4d38abb5bf1e4b459f308cbe60 (refs/remotes/origin/master)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 384b0f216aafbe4d38abb5bf1e4b459f308cbe60
Commit message: "improved ignore file"
 > /usr/bin/git rev-list --no-walk 0b2f0e20473412237153994159c42e7a30656b93 # timeout=10
 > /usr/bin/git remote # timeout=10
 > /usr/bin/git submodule init # timeout=10
 > /usr/bin/git submodule sync # timeout=10
 > /usr/bin/git config --get remote.origin.url # timeout=10
 > /usr/bin/git submodule init # timeout=10
 > /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > /usr/bin/git config --get submodule.data.url # timeout=10
 > /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10
 > /usr/bin/git submodule update --init --recursive --remote data
$ bash -c "[ -d \$HOME/.pyenv ]"
$ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true"
$ bash -c "mkdir \$HOME/.pyenv.lock"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "rm -rf \$HOME/.pyenv.lock"
[faust-macrogen] $ /bin/sh -xe /tmp/jenkins2963130415357104593.sh
+ pipenv install
Installing dependencies from Pipfile.lock (8f5326)…
To activate this project's virtualenv, run the following:
 $ pipenv shell
+ pipenv run ./main.py
/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
  return f(*args, **kwds)
WARNING  datings  Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight'
INFO     datings  Reading data to build base graph ...
WARNING  uris     Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_)
WARNING  uris     Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_)
ERROR    datings  Absolute dating without a date:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
      <comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment>
      <source uri="faust://bibliography/bohnenkamp1994">S.322</source>
      <item uri="faust://inscription/wa/2_I_H.10/i_uebrige"/>
   </date>
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:115
ERROR    datings  Absolute dating without a date:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
      <comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment>
      <source uri="faust://bibliography/bohnenkamp1994">S.322</source>
      <item uri="faust://inscription/wa/2_I_H.10/i_v"/>
   </date>
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:121
ERROR    datings  Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" notBefore="1827-12-25" notAfter="1817-12-25">
      <comment>Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . </comment>
      <source uri="faust://bibliography/gsa-datenbank"/>
      <item uri="faust://document/wa/2_I_H.f"/>
   </date>
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:663
INFO     graph    Adopted H P167 from inscription H P167 i_r_u
INFO     graph    Adopted H P167 from inscription H P167 i_v
INFO     graph    Adopted H P22 from inscription H P22 i_2_o
INFO     graph    Adopted H P22 from inscription H P22 i_uebrige
INFO     graph    Adopted H P176 Var from inscription H P176 Var i_r
INFO     graph    Adopted 2 IV H.19 from inscription 2 IV H.19 i_uebrige
INFO     graph    Adopted H P22 from inscription H P22 i_1_o
INFO     graph    Adopted H P167 from inscription H P167 i_uebrige
INFO     graph    Adopted 1 H.10 from inscription 1 H.10 i_uebrige
INFO     graph    Adopted H P22 from inscription H P22 i_2_u
INFO     graph    Removing hertz and temp-syn
DEBUG    graph    Adding 124 otherwise unmentioned witnesses to the working graph
INFO     graph    Extracted 5 subgraphs with conflicts
INFO     graph    Calculating minimum feedback arc set for 5 subgraphs
DEBUG    graph    Calculating MFAS for a 2-node graph using ip, may take a while
DEBUG    graph    1 edges to remove
DEBUG    graph    Calculating MFAS for a 3-node graph using ip, may take a while
DEBUG    graph    2 edges to remove
DEBUG    graph    Calculating MFAS for a 4-node graph using ip, may take a while
DEBUG    graph    2 edges to remove
DEBUG    graph    Calculating MFAS for a 55-node graph using eades, may take a while
DEBUG    graph    11 edges to remove
DEBUG    graph    Calculating MFAS for a 693-node graph using eades, may take a while
DEBUG    graph    351 edges to remove
WARNING  graph    Found 19 self loops, will also remove those. Affected nodes: 2 III H.76, 2 III H.76, 2 III H.50c, 2 III H.50c, 2 III H.70, 2 III H.70, 2 III H.70, 2 III H.3a:1, 2 III H.3a:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 II H.22, 2 II H.22, fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 
INFO     graph    Marking 386 conflicting edges for deletion
INFO     graph    Building DAG from remaining data
INFO     graph    Removed 386 of the original 3156 edges
INFO     graph    Augmenting refs with data from graphs
INFO     graph    Creating sort order from DAG
INFO     visualize Writing target/macrogenesis/help-pre.dot ...
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INFO     visualize Writing target/macrogenesis/help-orphan.dot ...
INFO     visualize Writing target/macrogenesis/wa.182.i_r_o-graph.dot ...
INFO     visualize Writing target/macrogenesis/1_H.15-graph.dot ...
INFO     visualize Writing target/macrogenesis/faustedition.2_III_H.27.alpha-graph.dot ...
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INFO     visualize Writing target/macrogenesis/faustedition.2_III_H.49.i_uebrige-graph.dot ...
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INFO     visualize Writing target/macrogenesis/faustedition.2_IV_H.12.i_v_o-graph.dot ...
INFO     visualize Writing target/macrogenesis/fischer_lamberg.2_III_H.30_1-graph.dot ...
INFO     visualize Writing target/macrogenesis/fischer_lamberg.2_III_H.30_2-graph.dot ...
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INFO     visualize Writing target/macrogenesis/landeck.2_V_H.1III-graph.dot ...
INFO     visualize Writing target/macrogenesis/landeck.2_V_H.g33-graph.dot ...
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INFO     visualize Writing target/macrogenesis/landeck.2_V_H.gII-graph.dot ...
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INFO     visualize Writing target/macrogenesis/wa.2_III_H.2_alpha-graph.dot ...
INFO     visualize Writing target/macrogenesis/wa.2_II_H.31_alpha-graph.dot ...
INFO     visualize Writing target/macrogenesis/wa.2_II_H.8a-graph.dot ...
INFO     visualize Writing target/macrogenesis/wa.2_II_IH.56-graph.dot ...
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INFO     visualize Writing target/macrogenesis/wa.2_IV_H.11-graph.dot ...
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INFO     visualize Writing target/macrogenesis/wa.2_I_H_i-graph.dot ...
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INFO     visualize Writing target/macrogenesis/wa.2_V_H.2b-graph.dot ...
INFO     visualize Writing target/macrogenesis/wa.2_V_H.39-graph.dot ...
INFO     visualize Writing target/macrogenesis/wa.2_H_P167.i_uebrige-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.2-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.9e_-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.9i_-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.9n_-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.9-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.10-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.14-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.15b-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.18-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.19-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_I_H.20-graph.dot ...
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INFO     visualize Writing target/macrogenesis/2_II_H.2_1-graph.dot ...
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INFO     visualize Writing target/macrogenesis/2_II_H.20-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_II_H.27_1-graph.dot ...
INFO     visualize Writing target/macrogenesis/faustedition.2_II_H.28.alpha-graph.dot ...
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INFO     visualize Writing target/macrogenesis/2_II_H.31-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_II_H.31a-graph.dot ...
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INFO     visualize Writing target/macrogenesis/faustedition.2_II_H.69.alpha-graph.dot ...
INFO     visualize Writing target/macrogenesis/fischer_lamberg.2_II_H.69_1-graph.dot ...
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INFO     visualize Writing target/macrogenesis/wa.2_III_H.7.2-graph.dot ...
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INFO     visualize Writing target/macrogenesis/2_III_H.57a-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_III_H.66-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_III_H.68-graph.dot ...
INFO     visualize Writing target/macrogenesis/2_III_H.75b-graph.dot ...
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INFO     visualize Writing target/macrogenesis/H_P204-graph.dot ...
INFO     visualize Writing target/macrogenesis/gsa_1.GSA_25_XIX,4-graph.dot ...
INFO     visualize Writing target/macrogenesis/gsa_2.GSA_25_W_1806-graph.dot ...
INFO     visualize Writing target/macrogenesis/bohnenkamp.H_P124-graph.dot ...
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Rendering:  77%|███████▋  | 888/1152 [00:07<00:02, 117.98 SVGs/s]
Rendering:  78%|███████▊  | 898/1152 [00:07<00:02, 117.66 SVGs/s]
Rendering:  79%|███████▊  | 907/1152 [00:07<00:02, 116.59 SVGs/s]
Rendering:  80%|███████▉  | 918/1152 [00:07<00:02, 116.47 SVGs/s]
Rendering:  80%|████████  | 927/1152 [00:08<00:01, 115.34 SVGs/s]
Rendering:  81%|████████  | 935/1152 [00:08<00:01, 114.61 SVGs/s]
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Rendering:  83%|████████▎ | 958/1152 [00:08<00:01, 114.04 SVGs/s]
Rendering:  84%|████████▍ | 967/1152 [00:08<00:01, 112.51 SVGs/s]
Rendering:  85%|████████▍ | 975/1152 [00:08<00:01, 111.76 SVGs/s]
Rendering:  85%|████████▌ | 984/1152 [00:08<00:01, 111.48 SVGs/s]
Rendering:  86%|████████▌ | 992/1152 [00:09<00:01, 109.76 SVGs/s]
Rendering:  87%|████████▋ | 1001/1152 [00:09<00:01, 108.95 SVGs/s]
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Rendering:  90%|████████▉ | 1034/1152 [00:09<00:01, 107.14 SVGs/s]
Rendering:  91%|█████████ | 1043/1152 [00:09<00:01, 106.82 SVGs/s]
Rendering:  91%|█████████▏| 1052/1152 [00:09<00:00, 106.51 SVGs/s]
Rendering:  92%|█████████▏| 1061/1152 [00:10<00:00, 105.98 SVGs/s]
Rendering:  93%|█████████▎| 1069/1152 [00:10<00:00, 105.68 SVGs/s]
Rendering:  94%|█████████▍| 1083/1152 [00:10<00:00, 105.73 SVGs/s]
Rendering:  95%|█████████▌| 1098/1152 [00:10<00:00, 106.12 SVGs/s]
Rendering:  96%|█████████▋| 1109/1152 [00:10<00:00, 105.70 SVGs/s]
Rendering:  97%|█████████▋| 1123/1152 [00:10<00:00, 105.99 SVGs/s]
Rendering:  98%|█████████▊| 1134/1152 [00:10<00:00, 105.95 SVGs/s]
Rendering: 100%|█████████▉| 1148/1152 [00:10<00:00, 106.12 SVGs/s]
Rendering: 100%|██████████| 1152/1152 [00:10<00:00, 106.01 SVGs/s]
INFO     visualize Rendered 1152 SVGs, 0 failed
+ cd target
+ rsync -a -u --chmod=ug+rwX,o+rX,Dg+s --omit-dir-times --info=del,stats2,copy,flist2 macrogenesis beta.faustedition.net:/var/www/dev/
sending incremental file list

Number of files: 2,964 (reg: 2,963, dir: 1)
Number of created files: 285 (reg: 285)
Number of deleted files: 0
Number of regular files transferred: 2,963
Total file size: 71,327,251 bytes
Total transferred file size: 71,327,251 bytes
Literal data: 69,038,078 bytes
Matched data: 2,289,173 bytes
File list size: 65,536
File list generation time: 0.001 seconds
File list transfer time: 0.000 seconds
Total bytes sent: 69,288,671
Total bytes received: 824,316

sent 69,288,671 bytes  received 824,316 bytes  15,580,663.78 bytes/sec
total size is 71,327,251  speedup is 1.02
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 6204 killed;
[ssh-agent] Stopped.
Archiving artifacts
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: SUCCESS