Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-ZSoJPghlskPb/agent.6202 SSH_AGENT_PID=6204 [ssh-agent] Started. $ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_5996365156253612455.key Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_5996365156253612455.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_5996365156253612455.key) [ssh-agent] Using credentials git $ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7483154566746350403.key Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7483154566746350403.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7483154566746350403.key) [ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de) > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10 Fetching upstream changes from git://github.com/faustedition/faust-macrogen > /usr/bin/git --version # timeout=10 using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de > /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/* > /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10 Checking out Revision 384b0f216aafbe4d38abb5bf1e4b459f308cbe60 (refs/remotes/origin/master) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 384b0f216aafbe4d38abb5bf1e4b459f308cbe60 Commit message: "improved ignore file" > /usr/bin/git rev-list --no-walk 0b2f0e20473412237153994159c42e7a30656b93 # timeout=10 > /usr/bin/git remote # timeout=10 > /usr/bin/git submodule init # timeout=10 > /usr/bin/git submodule sync # timeout=10 > /usr/bin/git config --get remote.origin.url # timeout=10 > /usr/bin/git submodule init # timeout=10 > /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > /usr/bin/git config --get submodule.data.url # timeout=10 > /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10 > /usr/bin/git submodule update --init --recursive --remote data $ bash -c "[ -d \$HOME/.pyenv ]" $ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true" $ bash -c "mkdir \$HOME/.pyenv.lock" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "rm -rf \$HOME/.pyenv.lock" [faust-macrogen] $ /bin/sh -xe /tmp/jenkins2963130415357104593.sh + pipenv install Installing dependencies from Pipfile.lock (8f5326)… To activate this project's virtualenv, run the following: $ pipenv shell + pipenv run ./main.py /mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88 return f(*args, **kwds) WARNING datings Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight' INFO datings Reading data to build base graph ... WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_) WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_) ERROR datings Absolute dating without a date: Über Rest der Handschrift keine Aussage über Datierung möglich S.322 at data/xml/macrogenesis/handschriftendatierung_i.xml:115 ERROR datings Absolute dating without a date: Über Rest der Handschrift keine Aussage über Datierung möglich S.322 at data/xml/macrogenesis/handschriftendatierung_i.xml:121 ERROR datings Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict: Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . at data/xml/macrogenesis/handschriftendatierung_i.xml:663 INFO graph Adopted H P167 from inscription H P167 i_r_u INFO graph Adopted H P167 from inscription H P167 i_v INFO graph Adopted H P22 from inscription H P22 i_2_o INFO graph Adopted H P22 from inscription H P22 i_uebrige INFO graph Adopted H P176 Var from inscription H P176 Var i_r INFO graph Adopted 2 IV H.19 from inscription 2 IV H.19 i_uebrige INFO graph Adopted H P22 from inscription H P22 i_1_o INFO graph Adopted H P167 from inscription H P167 i_uebrige INFO graph Adopted 1 H.10 from inscription 1 H.10 i_uebrige INFO graph Adopted H P22 from inscription H P22 i_2_u INFO graph Removing hertz and temp-syn DEBUG graph Adding 124 otherwise unmentioned witnesses to the working graph INFO graph Extracted 5 subgraphs with conflicts INFO graph Calculating minimum feedback arc set for 5 subgraphs DEBUG graph Calculating MFAS for a 2-node graph using ip, may take a while DEBUG graph 1 edges to remove DEBUG graph Calculating MFAS for a 3-node graph using ip, may take a while DEBUG graph 2 edges to remove DEBUG graph Calculating MFAS for a 4-node graph using ip, may take a while DEBUG graph 2 edges to remove DEBUG graph Calculating MFAS for a 55-node graph using eades, may take a while DEBUG graph 11 edges to remove DEBUG graph Calculating MFAS for a 693-node graph using eades, may take a while DEBUG graph 351 edges to remove WARNING graph Found 19 self loops, will also remove those. Affected nodes: 2 III H.76, 2 III H.76, 2 III H.50c, 2 III H.50c, 2 III H.70, 2 III H.70, 2 III H.70, 2 III H.3a:1, 2 III H.3a:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 II H.22, 2 II H.22, fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 INFO graph Marking 386 conflicting edges for deletion INFO graph Building DAG from remaining data INFO graph Removed 386 of the original 3156 edges INFO graph Augmenting refs with data from graphs INFO graph Creating sort order from DAG INFO visualize Writing target/macrogenesis/help-pre.dot ... INFO visualize Writing target/macrogenesis/help-conflict.dot ... INFO visualize Writing target/macrogenesis/help-syn.dot ... INFO visualize Writing target/macrogenesis/help-dating.dot ... INFO visualize Writing target/macrogenesis/help-interval.dot ... INFO visualize Writing target/macrogenesis/help-when.dot ... INFO visualize Writing target/macrogenesis/help-orphan.dot ... 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