Started by GitHub push by severinsimmler Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 0115f35d3456bf1f6a46423615970c17102acdc1 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 0115f35d3456bf1f6a46423615970c17102acdc1 Commit message: "Fix bug (vis module)" > git rev-list 950635036a9bb528290fcecbdb36cd0d5dc7cdf0 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda6435330175396505424.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting sphinx (from -r requirements-dev.txt (line 5)) Using cached Sphinx-1.6.5-py2.py3-none-any.whl Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 6)) Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-build-n8cotk0o/nbsphinx Collecting recommonmark (from -r requirements-dev.txt (line 7)) Using cached recommonmark-0.4.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.21.1-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached gensim-3.2.0-cp35-cp35m-manylinux1_x86_64.whl Collecting lda>=1.0.5 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl Collecting lxml>=3.6.4 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached lxml-4.1.1-cp35-cp35m-manylinux1_x86_64.whl Collecting flask>=0.11.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Flask-0.12.2-py2.py3-none-any.whl Collecting matplotlib>=1.5.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-2.1.1-cp35-cp35m-manylinux1_x86_64.whl Collecting bokeh>=0.12.6 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting wordcloud>=1.3.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.4.2-cp35-cp35m-manylinux1_x86_64.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipywidgets-7.0.5-py2.py3-none-any.whl Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipykernel-4.7.0-py3-none-any.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Using cached qtconsole-4.3.1-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_console-5.2.0-py2.py3-none-any.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Using cached notebook-5.2.2-py2.py3-none-any.whl Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Jinja2-2.10-py2.py3-none-any.whl Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 5)) Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl Collecting six>=1.5 (from sphinx->-r requirements-dev.txt (line 5)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 5)) Using cached alabaster-0.7.10-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Babel-2.5.1-py2.py3-none-any.whl Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 5)) Using cached requests-2.18.4-py2.py3-none-any.whl Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from sphinx->-r requirements-dev.txt (line 5)) Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 5)) Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl Collecting imagesize (from sphinx->-r requirements-dev.txt (line 5)) Using cached imagesize-0.7.1-py2.py3-none-any.whl Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 5)) Using cached docutils-0.14-py3-none-any.whl Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 6)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting nbformat (from nbsphinx->-r requirements-dev.txt (line 6)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 7)) Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.3-py2.py3-none-any.whl Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pbr-3.1.1-py2.py3-none-any.whl Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Werkzeug-0.13-py2.py3-none-any.whl Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pyparsing-2.2.0-py2.py3-none-any.whl Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pillow (from wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Pillow-4.3.0-cp35-cp35m-manylinux1_x86_64.whl Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached widgetsnbextension-3.0.8-py2.py3-none-any.whl Collecting ipython>=4.0.0; python_version >= "3.3" (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython-6.2.1-py3-none-any.whl Collecting jupyter-core (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_core-4.4.0-py2.py3-none-any.whl Collecting mistune>=0.7.4 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached mistune-0.8.3-py2.py3-none-any.whl Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached bleach-2.1.2-py2.py3-none-any.whl Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached testpath-0.3.1-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting jupyter-client (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_client-5.2.0-py2.py3-none-any.whl Collecting ipython-genutils (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached terminado-0.8.1-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 5)) Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached certifi-2017.11.5-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached idna-2.6-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 6)) Using cached decorator-4.1.2-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsphinx->-r requirements-dev.txt (line 6)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached boto3-1.5.3-py2.py3-none-any.whl Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached boto-2.48.0-py2.py3-none-any.whl Collecting olefile (from pillow->wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached pexpect-4.3.1-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached jedi-0.11.1-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Collecting pickleshare (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached html5lib-1.0.1-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pyzmq-16.0.3-cp35-cp35m-manylinux1_x86_64.whl Collecting pytest; python_version >= "3.4" or python_version == "2.7" and extra == "test" (from jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pytest-3.3.1-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting ptyprocess; os_name != "nt" (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached jmespath-0.9.3-py2.py3-none-any.whl Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached s3transfer-0.1.12-py2.py3-none-any.whl Collecting botocore<1.9.0,>=1.8.17 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached botocore-1.8.17-py2.py3-none-any.whl Collecting parso==0.1.1 (from jedi>=0.10->ipython>=4.0.0; python_version >= "3.3"->ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached parso-0.1.1-py2.py3-none-any.whl Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Collecting pluggy<0.7,>=0.5 (from pytest; python_version >= "3.4" or python_version == "2.7" and extra == "test"->jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Collecting py>=1.5.0 (from pytest; python_version >= "3.4" or python_version == "2.7" and extra == "test"->jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached py-1.5.2-py2.py3-none-any.whl Collecting attrs>=17.2.0 (from pytest; python_version >= "3.4" or python_version == "2.7" and extra == "test"->jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached attrs-17.3.0-py2.py3-none-any.whl Installing collected packages: nose, coverage, nosexcover, ipython-genutils, decorator, six, traitlets, jsonschema, jupyter-core, nbformat, tornado, wcwidth, prompt-toolkit, ptyprocess, pexpect, parso, jedi, simplegeneric, Pygments, pickleshare, ipython, pyzmq, pluggy, py, attrs, pytest, python-dateutil, jupyter-client, ipykernel, mistune, webencodings, html5lib, bleach, testpath, pandocfilters, MarkupSafe, Jinja2, entrypoints, nbconvert, terminado, notebook, widgetsnbextension, ipywidgets, qtconsole, jupyter-console, jupyter, sphinxcontrib-websupport, alabaster, pytz, babel, certifi, idna, urllib3, chardet, requests, snowballstemmer, imagesize, docutils, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, scipy, bz2file, jmespath, botocore, s3transfer, boto3, boto, smart-open, gensim, pbr, lda, lxml, Werkzeug, click, itsdangerous, flask, pyparsing, cycler, matplotlib, PyYAML, bokeh, olefile, pillow, wordcloud, dariah-topics Running setup.py install for nbsphinx: started Running setup.py install for nbsphinx: finished with status 'done' Running setup.py develop for dariah-topics Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.13 alabaster-0.7.10 attrs-17.3.0 babel-2.5.1 bleach-2.1.2 bokeh-0.12.13 boto-2.48.0 boto3-1.5.3 botocore-1.8.17 bz2file-0.98 certifi-2017.11.5 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.2 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 gensim-3.2.0 html5lib-1.0.1 idna-2.6 imagesize-0.7.1 ipykernel-4.7.0 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.5 itsdangerous-0.24 jedi-0.11.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.0 jupyter-console-5.2.0 jupyter-core-4.4.0 lda-1.0.5 lxml-4.1.1 matplotlib-2.1.1 mistune-0.8.3 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.18 nose-1.3.7 nosexcover-1.0.11 notebook-5.2.2 numpy-1.13.3 olefile-0.44 pandas-0.21.1 pandocfilters-1.4.2 parso-0.1.1 pbr-3.1.1 pexpect-4.3.1 pickleshare-0.7.4 pillow-4.3.0 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.2 pyparsing-2.2.0 pytest-3.3.1 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.3 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.12.12 requests-2.18.4 s3transfer-0.1.12 scipy-1.0.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.5 snowballstemmer-1.2.1 sphinx-1.6.5 sphinxcontrib-websupport-1.0.1 terminado-0.8.1 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.8 wordcloud-1.3.1 + ./setup.py sdist bdist_wheel running sdist running egg_info writing requirements to dariah_topics.egg-info/requires.txt writing top-level names to dariah_topics.egg-info/top_level.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing dariah_topics.egg-info/PKG-INFO reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url creating dariah_topics-0.4.0.dev1 creating dariah_topics-0.4.0.dev1/dariah_topics creating dariah_topics-0.4.0.dev1/dariah_topics.egg-info creating dariah_topics-0.4.0.dev1/test copying files to dariah_topics-0.4.0.dev1... copying README.md -> dariah_topics-0.4.0.dev1 copying setup.cfg -> dariah_topics-0.4.0.dev1 copying setup.py -> dariah_topics-0.4.0.dev1 copying dariah_topics/__init__.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/doc_meta_list.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/meta.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/postprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.4.0.dev1/test Writing dariah_topics-0.4.0.dev1/setup.cfg Creating tar archive removing 'dariah_topics-0.4.0.dev1' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doc_meta_list.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.4.0.dev1-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/doc_meta_list.py' adding 'dariah_topics/doclist.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/mallet.py' adding 'dariah_topics/meta.py' adding 'dariah_topics/model_creation.py' adding 'dariah_topics/postprocessing.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-0.4.0.dev1.dist-info/DESCRIPTION.rst' adding 'dariah_topics-0.4.0.dev1.dist-info/metadata.json' adding 'dariah_topics-0.4.0.dev1.dist-info/top_level.txt' adding 'dariah_topics-0.4.0.dev1.dist-info/WHEEL' adding 'dariah_topics-0.4.0.dev1.dist-info/METADATA' adding 'dariah_topics-0.4.0.dev1.dist-info/RECORD' + nosetests --cover-html ............/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) ......E...................... ====================================================================== ERROR: test_topic_modeling (demonstrator_test.DemonstratorTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/demonstrator_test.py", line 57, in test_topic_modeling resp = self.app.post('/upload', data=data) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 801, in post return self.open(*args, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/testing.py", line 127, in open follow_redirects=follow_redirects) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 764, in open response = self.run_wsgi_app(environ, buffered=buffered) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 677, in run_wsgi_app rv = run_wsgi_app(self.application, environ, buffered=buffered) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/test.py", line 884, in run_wsgi_app app_rv = app(environ, start_response) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1997, in __call__ return self.wsgi_app(environ, start_response) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1985, in wsgi_app response = self.handle_exception(e) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1540, in handle_exception reraise(exc_type, exc_value, tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/_compat.py", line 33, in reraise raise value File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1982, in wsgi_app response = self.full_dispatch_request() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1614, in full_dispatch_request rv = self.handle_user_exception(e) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1517, in handle_user_exception reraise(exc_type, exc_value, tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/_compat.py", line 33, in reraise raise value File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1612, in full_dispatch_request rv = self.dispatch_request() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/app.py", line 1598, in dispatch_request return self.view_functions[rule.endpoint](**req.view_args) File "demonstrator/demonstrator.py", line 170, in upload_file heatmap = PlotDocumentTopics.interactive_heatmap() File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py", line 468, in interactive_heatmap if self.enable_notebook: AttributeError: 'PlotDocumentTopics' object has no attribute 'enable_notebook' -------------------- >> begin captured stdout << --------------------- Accessing user input ... 1 text files. 1 topics. 1 iterations. Using external stopwords list. Tokenizing ... Accessing external stopwords list ... Determining hapax legomena ... Removing stopwords and hapax legomena from corpus ... Accessing corpus vocabulary ... LDA training ... Accessing topics ... Accessing doc-topic-matrix ... Creating interactive heatmap ... --------------------- >> end captured stdout << ---------------------- -------------------- >> begin captured logging << -------------------- dariah_topics.preprocessing: DEBUG: Tokenizing document ... dariah_topics.preprocessing: DEBUG: Lowering all characters ... dariah_topics.preprocessing: INFO: Creating document-term matrix for small corpus ... dariah_topics.preprocessing: DEBUG: Updating document in document-term matrix ... dariah_topics.preprocessing: INFO: Determining hapax legomena ... dariah_topics.preprocessing: DEBUG: Small corpus model ... dariah_topics.preprocessing: DEBUG: Tokenizing document ... dariah_topics.preprocessing: DEBUG: Lowering all characters ... lda: INFO: n_documents: 1 lda: INFO: vocab_size: 15 lda: INFO: n_words: 40 lda: INFO: n_topics: 1 lda: INFO: n_iter: 1 lda: INFO: <0> log likelihood: -165 lda: INFO: <0> log likelihood: -165 dariah_topics.postprocessing: INFO: Accessing topics from lda model ... --------------------- >> end captured logging << --------------------- Name Stmts Miss Cover ----------------------------------------------------- dariah_topics/__init__.py 7 0 100% dariah_topics/doc_meta_list.py 118 88 25% dariah_topics/doclist.py 93 8 91% dariah_topics/mallet.py 87 5 94% dariah_topics/meta.py 57 31 46% dariah_topics/postprocessing.py 174 51 71% dariah_topics/preprocessing.py 229 15 93% dariah_topics/visualization.py 207 110 47% ----------------------------------------------------- TOTAL 972 308 68% ---------------------------------------------------------------------- Ran 41 tests in 396.455s FAILED (errors=1) Build step 'Virtualenv Builder' marked build as failure Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] ERROR on repos [GHRepository@701549b6[description=A Python library for Topic Modeling.,homepage=,name=Topics,license=,fork=true,size=37946,milestones={},language=Jupyter Notebook,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 20 Dec 2017 11:44:00 GMT], ETag=[W/"2ac31153e5e8094ec68b03bbeaf3b054"], Last-Modified=[Mon, 18 Dec 2017 12:03:31 GMT], OkHttp-Received-Millis=[1513770241038], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1513770240724], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[B878:4A4B:15F397:307F96:5A3A4D00], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4979], X-RateLimit-Reset=[1513772844], X-Runtime-rack=[0.085684], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:0115f35) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/0115f35d3456bf1f6a46423615970c17102acdc1 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: FAILURE