Started by GitHub push by thvitt
Running as SYSTEM
Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/pydelta-next
The recommended git tool is: NONE
using credential Github
Cloning the remote Git repository
Cloning repository https://github.com/cophi-wue/pydelta
 > /usr/bin/git init /mnt/data/jenkins/workspace/pydelta-next # timeout=10
Fetching upstream changes from https://github.com/cophi-wue/pydelta
 > /usr/bin/git --version # timeout=10
 > git --version # 'git version 2.11.0'
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress -- https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* # timeout=10
 > /usr/bin/git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10
 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > /usr/bin/git rev-parse refs/remotes/origin/next^{commit} # timeout=10
Checking out Revision 4f21ac5a68495e172f8cdf7a6d95cb30facc653a (refs/remotes/origin/next)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 4f21ac5a68495e172f8cdf7a6d95cb30facc653a # timeout=10
Commit message: "added pytest-cov to dev dependencies"
 > /usr/bin/git rev-list --no-walk 31bf8a717e18d0106e7e4b0b6932fb3404594ac0 # timeout=10
[Checks API] No suitable checks publisher found.
No emails were triggered.
[pydelta-next] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python
Installing setuptools, pip, wheel...done.
[pydelta-next] $ /bin/sh -xe /tmp/shiningpanda288186213305979749.sh
+ pip install -U pip
DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (20.2.3)
+ pip install -U numpy scipy Cython
DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
Collecting numpy
  Using cached numpy-1.18.5-cp35-cp35m-manylinux1_x86_64.whl (19.9 MB)
Collecting scipy
  Using cached scipy-1.4.1-cp35-cp35m-manylinux1_x86_64.whl (26.0 MB)
Collecting Cython
  Using cached Cython-0.29.21-cp35-cp35m-manylinux1_x86_64.whl (1.9 MB)
Installing collected packages: numpy, scipy, Cython
Successfully installed Cython-0.29.21 numpy-1.18.5 scipy-1.4.1
+ pip install -U -r requirements.txt
DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1))
Requirement already up-to-date: Cython in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 3)) (0.29.21)
Collecting pytest
  Using cached pytest-6.1.1-py3-none-any.whl (272 kB)
Collecting pytest-cov
  Downloading pytest_cov-2.10.1-py2.py3-none-any.whl (19 kB)
Collecting Sphinx
  Using cached Sphinx-3.2.1-py3-none-any.whl (2.9 MB)
Collecting ipykernel
  Using cached ipykernel-5.3.4-py3-none-any.whl (120 kB)
Collecting nbsphinx
  Using cached nbsphinx-0.7.1-py3-none-any.whl (24 kB)
Requirement already satisfied, skipping upgrade: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) (1.4.1)
Collecting matplotlib>=1.3.1
  Using cached matplotlib-3.0.3-cp35-cp35m-manylinux1_x86_64.whl (13.0 MB)
Requirement already satisfied, skipping upgrade: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) (1.18.5)
Collecting pandas>=0.13.1
  Using cached pandas-0.25.3-cp35-cp35m-manylinux1_x86_64.whl (10.3 MB)
Collecting scikit-learn>=0.16.0
  Using cached scikit_learn-0.22.2.post1-cp35-cp35m-manylinux1_x86_64.whl (7.0 MB)
Collecting regex
  Downloading regex-2020.10.11.tar.gz (690 kB)
Collecting toml
  Using cached toml-0.10.1-py2.py3-none-any.whl (19 kB)
Collecting importlib-metadata>=0.12; python_version < "3.8"
  Using cached importlib_metadata-2.0.0-py2.py3-none-any.whl (31 kB)
Collecting pathlib2>=2.2.0; python_version < "3.6"
  Using cached pathlib2-2.3.5-py2.py3-none-any.whl (18 kB)
Collecting attrs>=17.4.0
  Using cached attrs-20.2.0-py2.py3-none-any.whl (48 kB)
Collecting iniconfig
  Using cached iniconfig-1.0.1-py3-none-any.whl (4.2 kB)
Collecting py>=1.8.2
  Using cached py-1.9.0-py2.py3-none-any.whl (99 kB)
Collecting packaging
  Using cached packaging-20.4-py2.py3-none-any.whl (37 kB)
Collecting pluggy<1.0,>=0.12
  Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting coverage>=4.4
  Downloading coverage-5.3-cp35-cp35m-manylinux1_x86_64.whl (229 kB)
Collecting sphinxcontrib-devhelp
  Using cached sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB)
Collecting Pygments>=2.0
  Using cached Pygments-2.7.1-py3-none-any.whl (944 kB)
Collecting Jinja2>=2.3
  Using cached Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
Collecting sphinxcontrib-applehelp
  Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB)
Collecting alabaster<0.8,>=0.7
  Using cached alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting snowballstemmer>=1.1
  Using cached snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB)
Collecting sphinxcontrib-jsmath
  Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Requirement already satisfied, skipping upgrade: setuptools in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) (50.3.0)
Collecting docutils>=0.12
  Using cached docutils-0.16-py2.py3-none-any.whl (548 kB)
Collecting requests>=2.5.0
  Using cached requests-2.24.0-py2.py3-none-any.whl (61 kB)
Collecting babel>=1.3
  Using cached Babel-2.8.0-py2.py3-none-any.whl (8.6 MB)
Collecting sphinxcontrib-htmlhelp
  Using cached sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB)
Collecting sphinxcontrib-serializinghtml
  Using cached sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB)
Collecting sphinxcontrib-qthelp
  Using cached sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB)
Collecting imagesize
  Using cached imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB)
Processing /mnt/data/jenkins/.cache/pip/wheels/68/3c/1e/fd5ff3580fd107e6785d42a2d7e690396d1cefa44813561c29/tornado-6.0.4-cp35-cp35m-linux_x86_64.whl
Collecting traitlets>=4.1.0
  Using cached traitlets-4.3.3-py2.py3-none-any.whl (75 kB)
Collecting ipython>=5.0.0
  Using cached ipython-7.9.0-py3-none-any.whl (775 kB)
Collecting jupyter-client
  Using cached jupyter_client-6.1.7-py3-none-any.whl (108 kB)
Collecting nbconvert!=5.4
  Using cached nbconvert-5.6.1-py2.py3-none-any.whl (455 kB)
Collecting nbformat
  Using cached nbformat-5.0.7-py3-none-any.whl (170 kB)
Collecting cycler>=0.10
  Using cached cycler-0.10.0-py2.py3-none-any.whl (6.5 kB)
Collecting python-dateutil>=2.1
  Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting kiwisolver>=1.0.1
  Using cached kiwisolver-1.1.0-cp35-cp35m-manylinux1_x86_64.whl (90 kB)
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1
  Using cached pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting pytz>=2017.2
  Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB)
Collecting joblib>=0.11
  Using cached joblib-0.14.1-py2.py3-none-any.whl (294 kB)
Collecting zipp>=0.5
  Using cached zipp-1.2.0-py2.py3-none-any.whl (4.8 kB)
Collecting six
  Using cached six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting MarkupSafe>=0.23
  Using cached MarkupSafe-1.1.1-cp35-cp35m-manylinux1_x86_64.whl (27 kB)
Collecting chardet<4,>=3.0.2
  Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB)
Collecting idna<3,>=2.5
  Using cached idna-2.10-py2.py3-none-any.whl (58 kB)
Collecting certifi>=2017.4.17
  Using cached certifi-2020.6.20-py2.py3-none-any.whl (156 kB)
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
  Using cached urllib3-1.25.10-py2.py3-none-any.whl (127 kB)
Collecting decorator
  Using cached decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Collecting ipython-genutils
  Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting pickleshare
  Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting jedi>=0.10
  Using cached jedi-0.17.2-py2.py3-none-any.whl (1.4 MB)
Collecting pexpect; sys_platform != "win32"
  Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting backcall
  Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting prompt-toolkit<2.1.0,>=2.0.0
  Using cached prompt_toolkit-2.0.10-py3-none-any.whl (340 kB)
Collecting pyzmq>=13
  Using cached pyzmq-19.0.2-cp35-cp35m-manylinux1_x86_64.whl (1.0 MB)
Collecting jupyter-core>=4.6.0
  Using cached jupyter_core-4.6.3-py2.py3-none-any.whl (83 kB)
Processing /mnt/data/jenkins/.cache/pip/wheels/39/01/56/f1b08a6275acc59e846fa4c1e1b65dbc1919f20157d9e66c20/pandocfilters-1.4.2-cp35-none-any.whl
Collecting testpath
  Using cached testpath-0.4.4-py2.py3-none-any.whl (163 kB)
Collecting mistune<2,>=0.8.1
  Using cached mistune-0.8.4-py2.py3-none-any.whl (16 kB)
Collecting entrypoints>=0.2.2
  Using cached entrypoints-0.3-py2.py3-none-any.whl (11 kB)
Collecting bleach
  Using cached bleach-3.2.1-py2.py3-none-any.whl (145 kB)
Collecting defusedxml
  Using cached defusedxml-0.6.0-py2.py3-none-any.whl (23 kB)
Collecting jsonschema!=2.5.0,>=2.4
  Using cached jsonschema-3.2.0-py2.py3-none-any.whl (56 kB)
Collecting parso<0.8.0,>=0.7.0
  Using cached parso-0.7.1-py2.py3-none-any.whl (109 kB)
Collecting ptyprocess>=0.5
  Using cached ptyprocess-0.6.0-py2.py3-none-any.whl (39 kB)
Collecting wcwidth
  Using cached wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
Collecting webencodings
  Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Processing /mnt/data/jenkins/.cache/pip/wheels/6e/ce/d7/a149c2d007203e74294d9d641ea6a6504a3d71a0540790e452/pyrsistent-0.17.3-cp35-cp35m-linux_x86_64.whl
Building wheels for collected packages: regex
  Building wheel for regex (setup.py): started
  Building wheel for regex (setup.py): finished with status 'done'
  Created wheel for regex: filename=regex-2020.10.11-cp35-cp35m-linux_x86_64.whl size=581654 sha256=5f822bba63ad842ca91bc5be75624d712b4ff906bef79dd9f3956a7f3bc069c4
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/88/23/d7/8ae9436390fffeb67f5b623a6968c84ead7facd4b70f0e8f57
Successfully built regex
Installing collected packages: toml, zipp, importlib-metadata, six, pathlib2, attrs, iniconfig, py, pyparsing, packaging, pluggy, pytest, coverage, pytest-cov, sphinxcontrib-devhelp, Pygments, MarkupSafe, Jinja2, sphinxcontrib-applehelp, alabaster, snowballstemmer, sphinxcontrib-jsmath, docutils, chardet, idna, certifi, urllib3, requests, pytz, babel, sphinxcontrib-htmlhelp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, imagesize, Sphinx, tornado, decorator, ipython-genutils, traitlets, pickleshare, parso, jedi, ptyprocess, pexpect, backcall, wcwidth, prompt-toolkit, ipython, pyzmq, python-dateutil, jupyter-core, jupyter-client, ipykernel, pandocfilters, testpath, pyrsistent, jsonschema, nbformat, mistune, entrypoints, webencodings, bleach, defusedxml, nbconvert, nbsphinx, cycler, kiwisolver, matplotlib, pandas, joblib, scikit-learn, regex, delta
  Running setup.py develop for delta
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.1 Sphinx-3.2.1 alabaster-0.7.12 attrs-20.2.0 babel-2.8.0 backcall-0.2.0 bleach-3.2.1 certifi-2020.6.20 chardet-3.0.4 coverage-5.3 cycler-0.10.0 decorator-4.4.2 defusedxml-0.6.0 delta docutils-0.16 entrypoints-0.3 idna-2.10 imagesize-1.2.0 importlib-metadata-2.0.0 iniconfig-1.0.1 ipykernel-5.3.4 ipython-7.9.0 ipython-genutils-0.2.0 jedi-0.17.2 joblib-0.14.1 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.6.3 kiwisolver-1.1.0 matplotlib-3.0.3 mistune-0.8.4 nbconvert-5.6.1 nbformat-5.0.7 nbsphinx-0.7.1 packaging-20.4 pandas-0.25.3 pandocfilters-1.4.2 parso-0.7.1 pathlib2-2.3.5 pexpect-4.8.0 pickleshare-0.7.5 pluggy-0.13.1 prompt-toolkit-2.0.10 ptyprocess-0.6.0 py-1.9.0 pyparsing-2.4.7 pyrsistent-0.17.3 pytest-6.1.1 pytest-cov-2.10.1 python-dateutil-2.8.1 pytz-2020.1 pyzmq-19.0.2 regex-2020.10.11 requests-2.24.0 scikit-learn-0.22.2.post1 six-1.15.0 snowballstemmer-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4 testpath-0.4.4 toml-0.10.1 tornado-6.0.4 traitlets-4.3.3 urllib3-1.25.10 wcwidth-0.2.5 webencodings-0.5.1 zipp-1.2.0
+ ./setup.py sdist bdist
running sdist
running egg_info
writing top-level names to delta.egg-info/top_level.txt
writing delta.egg-info/PKG-INFO
writing requirements to delta.egg-info/requires.txt
writing dependency_links to delta.egg-info/dependency_links.txt
reading manifest file 'delta.egg-info/SOURCES.txt'
writing manifest file 'delta.egg-info/SOURCES.txt'
running check
warning: check: missing required meta-data: url

warning: check: missing meta-data: if 'author' supplied, 'author_email' must be supplied too

creating delta-2.0.0.dev1
creating delta-2.0.0.dev1/delta
creating delta-2.0.0.dev1/delta.egg-info
creating delta-2.0.0.dev1/test
copying files to delta-2.0.0.dev1...
copying README.rst -> delta-2.0.0.dev1
copying setup.cfg -> delta-2.0.0.dev1
copying setup.py -> delta-2.0.0.dev1
copying delta/__init__.py -> delta-2.0.0.dev1/delta
copying delta/cluster.py -> delta-2.0.0.dev1/delta
copying delta/corpus.py -> delta-2.0.0.dev1/delta
copying delta/deltas.py -> delta-2.0.0.dev1/delta
copying delta/experiments.py -> delta-2.0.0.dev1/delta
copying delta/features.py -> delta-2.0.0.dev1/delta
copying delta/graphics.py -> delta-2.0.0.dev1/delta
copying delta/util.py -> delta-2.0.0.dev1/delta
copying delta.egg-info/PKG-INFO -> delta-2.0.0.dev1/delta.egg-info
copying delta.egg-info/SOURCES.txt -> delta-2.0.0.dev1/delta.egg-info
copying delta.egg-info/dependency_links.txt -> delta-2.0.0.dev1/delta.egg-info
copying delta.egg-info/requires.txt -> delta-2.0.0.dev1/delta.egg-info
copying delta.egg-info/top_level.txt -> delta-2.0.0.dev1/delta.egg-info
copying test/test_issue6.py -> delta-2.0.0.dev1/test
Writing delta-2.0.0.dev1/setup.cfg
creating dist
Creating tar archive
removing 'delta-2.0.0.dev1' (and everything under it)
running bdist
running bdist_dumb
running build
running build_py
creating build
creating build/lib
creating build/lib/delta
copying delta/features.py -> build/lib/delta
copying delta/graphics.py -> build/lib/delta
copying delta/experiments.py -> build/lib/delta
copying delta/corpus.py -> build/lib/delta
copying delta/cluster.py -> build/lib/delta
copying delta/util.py -> build/lib/delta
copying delta/deltas.py -> build/lib/delta
copying delta/__init__.py -> build/lib/delta
installing to build/bdist.linux-x86_64/dumb
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/dumb
creating build/bdist.linux-x86_64/dumb/mnt
creating build/bdist.linux-x86_64/dumb/mnt/data
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages
creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/features.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/graphics.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/experiments.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/corpus.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/cluster.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/util.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/deltas.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
copying build/lib/delta/__init__.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/features.py to features.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/graphics.py to graphics.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/experiments.py to experiments.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/corpus.py to corpus.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/cluster.py to cluster.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/util.py to util.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/deltas.py to deltas.cpython-35.pyc
byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/__init__.py to __init__.cpython-35.pyc
running install_egg_info
Copying delta.egg-info to build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta-2.0.0.dev1-py3.5.egg-info
running install_scripts
Creating tar archive
removing 'build/bdist.linux-x86_64/dumb' (and everything under it)
+ ./setup.py build_sphinx
running build_sphinx
Running Sphinx v3.2.1
making output directory... done
WARNING: html_static_path entry '_static' does not exist
loading intersphinx inventory from http://docs.python.org/objects.inv...
loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv...
intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
intersphinx inventory has moved: http://pandas.pydata.org/pandas-docs/stable/objects.inv -> https://pandas.pydata.org/pandas-docs/stable/objects.inv
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
reading sources... [ 11%] CustomizingPipeline
reading sources... [ 22%] GettingStarted
reading sources... [ 33%] README
reading sources... [ 44%] README-branch
reading sources... [ 55%] concept
reading sources... [ 66%] delta
KMedoids clustering not available.
You need a patched scikit-learn, see README.txt
reading sources... [ 77%] index
reading sources... [ 88%] modules
reading sources... [100%] refactoring-notes

/mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available
  warn("KMedoidsClustering not available")
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:48: WARNING: File not found: 'delta.html#delta.corpus.Corpus'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.relative_frequencies'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.get_mfw_table'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:379: WARNING: File not found: 'delta.html#deltas.DistanceMatrix'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#graph.Dendrogram'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#corpus.DocumentDescriber'
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: WARNING: Unknown interpreted text role "function".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.metadata:3: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:11: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:13: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module".
WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7f371e82a588>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7f371e94d730>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.MetricDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7f3713aa7488>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 11%] CustomizingPipeline
writing output... [ 22%] GettingStarted
writing output... [ 33%] README
writing output... [ 44%] README-branch
writing output... [ 55%] concept
writing output... [ 66%] delta
writing output... [ 77%] index
writing output... [ 88%] modules
writing output... [100%] refactoring-notes

/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: 'any' reference target not found: the :math:`n
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:616: WARNING: undefined label: /delta.rst#cluster.clustering (if the link has no caption the label must precede a section header)
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:803: WARNING: undefined label: /delta.rst#cluster.flatclustering (if the link has no caption the label must precede a section header)
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator:1: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:11: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:6: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:16: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.PreprocessingDeltaFunction:7: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry
generating indices...  genindex py-modindexdone
copying notebooks ... [ 50%] GettingStarted.ipynb
copying notebooks ... [100%] CustomizingPipeline.ipynb

highlighting module code... [ 20%] delta.cluster
highlighting module code... [ 40%] delta.corpus
highlighting module code... [ 60%] delta.deltas
highlighting module code... [ 80%] delta.graphics
highlighting module code... [100%] delta.util

writing additional pages...  searchdone
copying images... [ 33%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png
copying images... [ 66%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_11_0.png
copying images... [100%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_22_0.png

copying static files... ... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 38 warnings.

The HTML pages are in build/sphinx/html.
+ pytest --cov=delta --cov-report=xml:coverage.xml
============================= test session starts ==============================
platform linux -- Python 3.5.3, pytest-6.1.1, py-1.9.0, pluggy-0.13.1
rootdir: /mnt/data/jenkins/workspace/pydelta-next, configfile: setup.cfg
plugins: cov-2.10.1
collected 22 items

delta/util.py ...                                                        [ 13%]
test/corpus_test.py .....EEEEE                                           [ 59%]
test/deltas_test.py EEEEEE                                               [ 86%]
test/test_issue6.py EEE                                                  [100%]

==================================== ERRORS ====================================
________________________ ERROR at setup of test_call_fg ________________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_____________________ ERROR at setup of test_corpus_parse ______________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
______________________ ERROR at setup of test_corpus_mfw _______________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
__________________ ERROR at setup of test_integration_cluster __________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
____________________ ERROR at setup of test_table_describer ____________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_________ ERROR at setup of test_distance[burrows-0.7538867972199293] __________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_______ ERROR at setup of test_distance[Linear Delta-1149.434663563308] ________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_________ ERROR at setup of test_distance[quadratic-1102.845003724634] _________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
___________ ERROR at setup of test_distance[eder-0.3703309813454142] ___________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_______ ERROR at setup of test_distance[cosine_delta-0.6156353166442046] _______

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
___________________ ERROR at setup of test_composite_metric ____________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
________________________ ERROR at setup of test_issue_6 ________________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_______________________ ERROR at setup of test_dm_zscore _______________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
_____________________ ERROR at setup of test_dm_operation ______________________

    @pytest.fixture(scope='session')
    def testdir() -> str:
        """
        Test directory with 9 texts from 3 authors
        """
>       return os.fspath(Path(__file__).parent / 'corpus3')
E       AttributeError: module 'os' has no attribute 'fspath'

test/conftest.py:21: AttributeError
=============================== warnings summary ===============================
../../shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/distutils/__init__.py:4
  /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/distutils/__init__.py:4: PendingDeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
    import imp

delta/__init__.py:35
  /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available
    warn("KMedoidsClustering not available")

../../shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/_pytest/config/__init__.py:1230
  /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/_pytest/config/__init__.py:1230: PytestConfigWarning: Unknown config option: nb_diff_ignore
  
    self._warn_or_fail_if_strict("Unknown config option: {}\n".format(key))

-- Docs: https://docs.pytest.org/en/stable/warnings.html
--- generated xml file: /mnt/data/jenkins/workspace/pydelta-next/pytest.xml ----

----------- coverage: platform linux, python 3.5.3-final-0 -----------
Coverage XML written to file coverage.xml

=========================== short test summary info ============================
ERROR test/corpus_test.py::test_call_fg - AttributeError: module 'os' has no ...
ERROR test/corpus_test.py::test_corpus_parse - AttributeError: module 'os' ha...
ERROR test/corpus_test.py::test_corpus_mfw - AttributeError: module 'os' has ...
ERROR test/corpus_test.py::test_integration_cluster - AttributeError: module ...
ERROR test/corpus_test.py::test_table_describer - AttributeError: module 'os'...
ERROR test/deltas_test.py::test_distance[burrows-0.7538867972199293] - Attrib...
ERROR test/deltas_test.py::test_distance[Linear Delta-1149.434663563308] - At...
ERROR test/deltas_test.py::test_distance[quadratic-1102.845003724634] - Attri...
ERROR test/deltas_test.py::test_distance[eder-0.3703309813454142] - Attribute...
ERROR test/deltas_test.py::test_distance[cosine_delta-0.6156353166442046] - A...
ERROR test/deltas_test.py::test_composite_metric - AttributeError: module 'os...
ERROR test/test_issue6.py::test_issue_6 - AttributeError: module 'os' has no ...
ERROR test/test_issue6.py::test_dm_zscore - AttributeError: module 'os' has n...
ERROR test/test_issue6.py::test_dm_operation - AttributeError: module 'os' ha...
=================== 8 passed, 3 warnings, 14 errors in 0.34s ===================
Build step 'Virtualenv Builder' marked build as failure
[htmlpublisher] Archiving HTML reports...
[htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation
Recording test results
[Cobertura] Publishing Cobertura coverage report...

[Cobertura] Publishing Cobertura coverage results...

[Cobertura] Cobertura coverage report found.

[Set GitHub commit status (universal)] ERROR on repos [GHRepository@7daf46b1[nodeId=MDEwOlJlcG9zaXRvcnk4NDYzMzk3MQ==,description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,fork=true,archived=false,size=2994,milestones={},language=Jupyter Notebook,commits={},isTemplate=<null>,url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971,nodeId=<null>,createdAt=2017-03-11T08:03:36Z,updatedAt=2020-10-12T14:34:53Z]] (sha:4f21ac5) with context:pydelta-next
Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/4f21ac5a68495e172f8cdf7a6d95cb30facc653a
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
[Checks API] No suitable checks publisher found.
Notifying upstream projects of job completion
Email was triggered for: Failure - Any
Sending email for trigger: Failure - Any
Sending email to: thorsten.vitt@uni-wuerzburg.de
Connection error sending email, retrying once more in 10 seconds...
Connection error sending email, retrying once more in 10 seconds...
Failed after second try sending email
Finished: FAILURE