Started by user Thorsten Vitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 56e16349fdae2cc26887796f4442fb01eb8ab388 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 56e16349fdae2cc26887796f4442fb01eb8ab388 > git rev-list 56e16349fdae2cc26887796f4442fb01eb8ab388 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda5825145257562865184.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Downloading nose-1.3.7-py3-none-any.whl (154kB) Collecting nosexcover (from -r requirements-dev.txt (line 3)) Downloading nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Downloading jupyter-1.0.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pandas-0.19.2-cp35-cp35m-manylinux1_x86_64.whl (18.5MB) Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading regex-2017.01.17.tar.gz (601kB) Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading gensim-0.13.4.1.tar.gz (7.5MB) Collecting matplotlib==1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading matplotlib-1.5.3-cp35-cp35m-manylinux1_x86_64.whl (13.7MB) Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading numpy-1.12.0-cp35-cp35m-manylinux1_x86_64.whl (16.8MB) Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading scipy-0.18.1-cp35-cp35m-manylinux1_x86_64.whl (42.0MB) Collecting werkzeug>=0.11.15 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading Werkzeug-0.11.15-py2.py3-none-any.whl (307kB) Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading Flask-0.12-py2.py3-none-any.whl (82kB) Collecting pyLDAvis>=2.0.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pyLDAvis-2.1.0.tar.gz (2.2MB) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Downloading coverage-4.3.4-cp35-cp35m-manylinux1_x86_64.whl (191kB) Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Downloading nbconvert-5.1.1-py2.py3-none-any.whl (372kB) Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Downloading qtconsole-4.2.1-py2.py3-none-any.whl (104kB) Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Downloading notebook-4.3.1-py2.py3-none-any.whl (6.8MB) Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Downloading ipykernel-4.5.2-py2.py3-none-any.whl (98kB) Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Downloading jupyter_console-5.0.0-py2.py3-none-any.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Downloading ipywidgets-5.2.2-py2.py3-none-any.whl (43kB) Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pytz-2016.10-py2.py3-none-any.whl (483kB) Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading python_dateutil-2.6.0-py2.py3-none-any.whl (194kB) Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting smart_open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading smart_open-1.3.5.tar.gz Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting cycler (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading cycler-0.10.0-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading itsdangerous-0.24.tar.gz (46kB) Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading click-6.7-py2.py3-none-any.whl (71kB) Collecting Jinja2>=2.4 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading Jinja2-2.9.4-py2.py3-none-any.whl (274kB) Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting joblib>=0.8.4 (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading joblib-0.10.3-py2.py3-none-any.whl (166kB) Collecting numexpr (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading numexpr-2.6.1-cp35-cp35m-manylinux1_x86_64.whl (388kB) Collecting pytest (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pytest-3.0.6-py2.py3-none-any.whl (172kB) Collecting future (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading future-0.16.0.tar.gz (824kB) Collecting funcy (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading funcy-1.7.2.tar.gz Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading bleach-1.5.0-py2.py3-none-any.whl Collecting traitlets>=4.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading traitlets-4.3.1-py2.py3-none-any.whl (74kB) Collecting pygments (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading Pygments-2.2.0-py2.py3-none-any.whl (841kB) Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading pandocfilters-1.4.1.tar.gz Collecting nbformat (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading nbformat-4.2.0-py2.py3-none-any.whl (153kB) Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading entrypoints-0.2.2-py2.py3-none-any.whl Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading testpath-0.3-py2.py3-none-any.whl (82kB) Collecting mistune!=0.6 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading mistune-0.7.3-py2.py3-none-any.whl Collecting jupyter-core (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading jupyter_core-4.2.1-py2.py3-none-any.whl (125kB) Collecting jupyter-client>=4.1 (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Downloading jupyter_client-4.4.0-py2.py3-none-any.whl (76kB) Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading terminado-0.6.tar.gz Collecting tornado>=4 (from notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading tornado-4.4.2.tar.gz (460kB) Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading ipython_genutils-0.1.0-py2.py3-none-any.whl Collecting ipython>=4.0.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading ipython-5.1.0-py3-none-any.whl (747kB) Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Downloading prompt_toolkit-1.0.9-py3-none-any.whl (241kB) Collecting widgetsnbextension>=1.2.6 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Downloading widgetsnbextension-1.2.6-py2.py3-none-any.whl (1.5MB) Collecting boto>=2.32 (from smart_open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading boto-2.45.0-py2.py3-none-any.whl (1.3MB) Collecting bz2file (from smart_open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading bz2file-0.98.tar.gz Collecting requests (from smart_open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading requests-2.13.0-py2.py3-none-any.whl (584kB) Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading MarkupSafe-0.23.tar.gz Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting py>=1.4.29 (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading py-1.4.32-py2.py3-none-any.whl (82kB) Collecting html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading html5lib-0.9999999.tar.gz (889kB) Collecting decorator (from traitlets>=4.2->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading decorator-4.0.11-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading jsonschema-2.5.1-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client>=4.1->qtconsole->jupyter->-r requirements-dev.txt (line 4)) Downloading pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl (3.0MB) Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading ptyprocess-0.5.1-py2.py3-none-any.whl Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading pexpect-4.2.1-py2.py3-none-any.whl (55kB) Collecting pickleshare (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading pickleshare-0.7.4-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading simplegeneric-0.8.1.zip Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Downloading wcwidth-0.1.7-py2.py3-none-any.whl Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Building wheels for collected packages: regex, gensim, pyLDAvis, smart-open, itsdangerous, future, funcy, pandocfilters, terminado, tornado, bz2file, MarkupSafe, html5lib, simplegeneric Running setup.py bdist_wheel for regex: started Running setup.py bdist_wheel for regex: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/e3/54/f6/9cba8c2e34f051e084a3369ce79fc4c8420561a1ebc99e38f2 Running setup.py bdist_wheel for gensim: started Running setup.py bdist_wheel for gensim: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/dd/b6/d9/14ef0ec4f988b195d2ddd538ac21f8424d3604dd834cd4d77a Running setup.py bdist_wheel for pyLDAvis: started Running setup.py bdist_wheel for pyLDAvis: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/5f/0c/b3/f8ead492f61e80139043b4b881e3f52757883385244a61c651 Running setup.py bdist_wheel for smart-open: started Running setup.py bdist_wheel for smart-open: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/a6/61/e5/74ff1f24ad225557675acc0cc2ccb196d7b83c1eb7d80390c8 Running setup.py bdist_wheel for itsdangerous: started Running setup.py bdist_wheel for itsdangerous: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/fc/a8/66/24d655233c757e178d45dea2de22a04c6d92766abfb741129a Running setup.py bdist_wheel for future: started Running setup.py bdist_wheel for future: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/c2/50/7c/0d83b4baac4f63ff7a765bd16390d2ab43c93587fac9d6017a Running setup.py bdist_wheel for funcy: started Running setup.py bdist_wheel for funcy: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/6d/bd/b2/6d00f1a710d381a51c483ffcd596b5bc695a6908e917286817 Running setup.py bdist_wheel for pandocfilters: started Running setup.py bdist_wheel for pandocfilters: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/d4/01/68/49055c80b9f01ccb49241e73c8019628605064730941d70b56 Running setup.py bdist_wheel for terminado: started Running setup.py bdist_wheel for terminado: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/3b/c2/ea/af635ffb63857a8c2ddd22da6a4b52f5b7ea3065db94ef5d7c Running setup.py bdist_wheel for tornado: started Running setup.py bdist_wheel for tornado: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/b3/db/47/46e05d1ee3ecfba252fcab42f0a156dab0df0cddf99fa0827c Running setup.py bdist_wheel for bz2file: started Running setup.py bdist_wheel for bz2file: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/31/9c/20/996d65ca104cbca940b1b053299b68459391c01c774d073126 Running setup.py bdist_wheel for MarkupSafe: started Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/a3/fa/dc/0198eed9ad95489b8a4f45d14dd5d2aee3f8984e46862c5748 Running setup.py bdist_wheel for html5lib: started Running setup.py bdist_wheel for html5lib: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/6f/85/6c/56b8e1292c6214c4eb73b9dda50f53e8e977bf65989373c962 Running setup.py bdist_wheel for simplegeneric: started Running setup.py bdist_wheel for simplegeneric: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/7b/31/08/c85e74c84188cbec6a6827beec4d640f2bd78ae003dc1ec09d Successfully built regex gensim pyLDAvis smart-open itsdangerous future funcy pandocfilters terminado tornado bz2file MarkupSafe html5lib simplegeneric Installing collected packages: nose, coverage, nosexcover, html5lib, bleach, MarkupSafe, Jinja2, ipython-genutils, decorator, traitlets, pygments, pandocfilters, jupyter-core, jsonschema, nbformat, entrypoints, testpath, mistune, nbconvert, pyzmq, jupyter-client, tornado, ptyprocess, pexpect, wcwidth, prompt-toolkit, pickleshare, simplegeneric, ipython, ipykernel, qtconsole, terminado, notebook, jupyter-console, widgetsnbextension, ipywidgets, jupyter, pytz, python-dateutil, numpy, pandas, regex, scipy, boto, bz2file, requests, smart-open, gensim, cycler, matplotlib, werkzeug, itsdangerous, click, flask, joblib, numexpr, py, pytest, future, funcy, pyLDAvis, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.9.4 MarkupSafe-0.23 bleach-1.5.0 boto-2.45.0 bz2file-0.98 click-6.7 coverage-4.3.4 cycler-0.10.0 dariah-topics decorator-4.0.11 entrypoints-0.2.2 flask-0.12 funcy-1.7.2 future-0.16.0 gensim-0.13.4.1 html5lib-0.9999999 ipykernel-4.5.2 ipython-5.1.0 ipython-genutils-0.1.0 ipywidgets-5.2.2 itsdangerous-0.24 joblib-0.10.3 jsonschema-2.5.1 jupyter-1.0.0 jupyter-client-4.4.0 jupyter-console-5.0.0 jupyter-core-4.2.1 matplotlib-1.5.3 mistune-0.7.3 nbconvert-5.1.1 nbformat-4.2.0 nose-1.3.7 nosexcover-1.0.11 notebook-4.3.1 numexpr-2.6.1 numpy-1.12.0 pandas-0.19.2 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.9 ptyprocess-0.5.1 py-1.4.32 pyLDAvis-2.1.0 pygments-2.2.0 pytest-3.0.6 python-dateutil-2.6.0 pytz-2016.10 pyzmq-16.0.2 qtconsole-4.2.1 regex-2017.1.17 requests-2.13.0 scipy-0.18.1 simplegeneric-0.8.1 smart-open-1.3.5 terminado-0.6 testpath-0.3 tornado-4.4.2 traitlets-4.3.1 wcwidth-0.1.7 werkzeug-0.11.15 widgetsnbextension-1.2.6 + ./setup.py sdist bdist_wheel running sdist running egg_info writing dariah_topics.egg-info/PKG-INFO writing top-level names to dariah_topics.egg-info/top_level.txt writing requirements to dariah_topics.egg-info/requires.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:333: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0' normalized_version, warning: sdist: standard file not found: should have one of README, README.rst, README.txt running check warning: check: missing required meta-data: url creating dariah_topics-0.2.0.dev0 creating dariah_topics-0.2.0.dev0/dariah_topics creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying files to dariah_topics-0.2.0.dev0... copying setup.cfg -> dariah_topics-0.2.0.dev0 copying setup.py -> dariah_topics-0.2.0.dev0 copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info Writing dariah_topics-0.2.0.dev0/setup.cfg Creating tar archive removing 'dariah_topics-0.2.0.dev0' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL + nosetests /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) .E.. ====================================================================== ERROR: Tries to run the integration test notebook using jupyter. ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 16, in jupyter_integration_test stderr=STDOUT, universal_newlines=True) File "/usr/lib/python3.5/subprocess.py", line 316, in check_output **kwargs).stdout File "/usr/lib/python3.5/subprocess.py", line 398, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1 -------------------- >> begin captured logging << -------------------- root: ERROR: [NbConvertApp] Converting notebook /mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb to html [NbConvertApp] Executing notebook with kernel: python3 [NbConvertApp] ERROR | Error while converting '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb' Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 373, in export_single_notebook output, resources = self.exporter.from_filename(notebook_filename, resources=resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 171, in from_filename return self.from_file(f, resources=resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 189, in from_file return self.from_notebook_node(nbformat.read(file_stream, as_version=4), resources=resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/html.py", line 69, in from_notebook_node return super(HTMLExporter, self).from_notebook_node(nb, resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/templateexporter.py", line 236, in from_notebook_node nb_copy, resources = super(TemplateExporter, self).from_notebook_node(nb, resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 131, in from_notebook_node nb_copy, resources = self._preprocess(nb_copy, resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 308, in _preprocess nbc, resc = preprocessor(nbc, resc) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 47, in __call__ return self.preprocess(nb,resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 211, in preprocess nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 70, in preprocess nb.cells[index], resources = self.preprocess_cell(cell, resources, index) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 242, in preprocess_cell raise CellExecutionError(msg) nbconvert.preprocessors.execute.CellExecutionError: An error occurred while executing the following cell: ------------------ sparse_bow = pre.create_mm(doc_labels, doc_tokens, id_types, doc_ids) ------------------ TypeError: Cannot infer number of levels from empty list --------------------- >> end captured logging << --------------------- Name Stmts Miss Cover ----------------------------------------------------- dariah_topics.py 0 0 100% dariah_topics/mallet.py 77 59 23% dariah_topics/model_creation.py 60 43 28% dariah_topics/preprocessing.py 127 35 72% dariah_topics/visualization.py 113 89 21% ----------------------------------------------------- TOTAL 377 226 40% ---------------------------------------------------------------------- Ran 4 tests in 7.800s FAILED (errors=1) Build step 'Virtualenv Builder' marked build as failure Recording test results Skipping Cobertura coverage report as build was not UNSTABLE or better ... Sending e-mails to: sina.bock@stud-mail.uni-wuerzburg.de thorsten.vitt@uni-wuerzburg.de cyberpillip@gmail.com noreply@github.com [Set GitHub commit status (universal)] ERROR on repos [GHRepository@3131549d[description=<null>,homepage=<null>,name=Topics,license=<null>,fork=true,size=21703,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:56e1634) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/56e16349fdae2cc26887796f4442fb01eb8ab388 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE