Started by GitHub push by severinsimmler Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/cophi_toolbox > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/cophi-wue/cophi-toolbox # timeout=10 Fetching upstream changes from git://github.com/cophi-wue/cophi-toolbox > /usr/bin/git --version # timeout=10 using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/cophi-wue/cophi-toolbox +refs/heads/*:refs/remotes/origin/* Seen branch in repository origin/ddw Seen branch in repository origin/gh-pages Seen branch in repository origin/master Seen branch in repository origin/oop Seen branch in repository origin/testing Seen 5 remote branches > /usr/bin/git show-ref --tags -d # timeout=10 Checking out Revision a07dba4fe103788d0ba5e5030834d5fcf57f93b6 (origin/testing) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f a07dba4fe103788d0ba5e5030834d5fcf57f93b6 Commit message: "doc: extend" > /usr/bin/git rev-list --no-walk bcdbb7252a2d0139ae441e6daaeca8346ee94b1d # timeout=10 [cophi_toolbox] $ /bin/sh -xe /tmp/jenkins6111452169867177380.sh + tox GLOB sdist-make: /mnt/data/jenkins/workspace/cophi_toolbox/setup.py py34 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py34 ERROR: InterpreterNotFound: python3.4 py35 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.5.zip py35 installed: atomicwrites==1.2.0,attrs==18.1.0,cophi==1.0.5,coverage==4.5.1,lxml==4.2.4,more-itertools==4.3.0,numpy==1.15.1,pandas==0.23.4,pathlib2==2.3.2,pluggy==0.7.1,py==1.5.4,pytest==3.7.3,pytest-cov==2.5.1,python-dateutil==2.7.3,pytz==2018.5,regex==2018.8.17,six==1.11.0 py35 runtests: PYTHONHASHSEED='141593344' py35 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.5.6, pytest-3.7.3, py-1.5.4, pluggy-0.7.1 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.5.1 collected 88 items tests/test_api.py .. [ 2%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 86%] ....... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.5.6-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ========================== 88 passed in 3.59 seconds =========================== py36 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.5.zip py36 installed: atomicwrites==1.2.0,attrs==18.1.0,cophi==1.0.5,coverage==4.5.1,lxml==4.2.4,more-itertools==4.3.0,numpy==1.15.1,pandas==0.23.4,pluggy==0.7.1,py==1.5.4,pytest==3.7.3,pytest-cov==2.5.1,python-dateutil==2.7.3,pytz==2018.5,regex==2018.8.17,six==1.11.0 py36 runtests: PYTHONHASHSEED='141593344' py36 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.6.6, pytest-3.7.3, py-1.5.4, pluggy-0.7.1 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.5.1 collected 88 items tests/test_api.py .. [ 2%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 86%] ....... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.6.6-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ========================== 88 passed in 2.17 seconds =========================== py37 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.5.zip py37 installed: atomicwrites==1.2.0,attrs==18.1.0,cophi==1.0.5,coverage==4.5.1,lxml==4.2.4,more-itertools==4.3.0,numpy==1.15.1,pandas==0.23.4,pluggy==0.7.1,py==1.5.4,pytest==3.7.3,pytest-cov==2.5.1,python-dateutil==2.7.3,pytz==2018.5,regex==2018.8.17,six==1.11.0 py37 runtests: PYTHONHASHSEED='141593344' py37 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.7.0, pytest-3.7.3, py-1.5.4, pluggy-0.7.1 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.5.1 collected 88 items tests/test_api.py .. [ 2%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 86%] ....... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.7.0-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ========================== 88 passed in 3.20 seconds =========================== docs inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.5.zip docs installed: alabaster==0.7.11,Babel==2.6.0,certifi==2018.8.24,chardet==3.0.4,cophi==1.0.5,docutils==0.14,idna==2.7,imagesize==1.0.0,Jinja2==2.10,lxml==4.2.4,MarkupSafe==1.0,numpy==1.15.1,packaging==17.1,pandas==0.23.4,Pygments==2.2.0,pyparsing==2.2.0,python-dateutil==2.7.3,pytz==2018.5,regex==2018.8.17,requests==2.19.1,six==1.11.0,snowballstemmer==1.2.1,Sphinx==1.7.7,sphinxcontrib-websupport==1.1.0,urllib3==1.23 docs runtests: PYTHONHASHSEED='141593344' docs runtests: commands[0] | sphinx-build -E -b html docs dist/docs Running Sphinx v1.7.7 loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 3 source files that are out of date updating environment: 3 added, 0 changed, 0 removed reading sources... [ 33%] index reading sources... [ 66%] reference/cophi-toolbox reading sources... [100%] reference/index /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'cophi_toolbox.preprocessing'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/cophi_toolbox/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in dist/docs. docs runtests: commands[1] | sphinx-build -b linkcheck docs dist/docs Running Sphinx v1.7.7 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [linkcheck]: targets for 3 source files that are out of date updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] reference/cophi-toolbox /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'cophi_toolbox.preprocessing'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index build succeeded, 4 warnings. Look for any errors in the above output or in dist/docs/output.txt ___________________________________ summary ____________________________________ SKIPPED: py34: InterpreterNotFound: python3.4 py35: commands succeeded py36: commands succeeded py37: commands succeeded docs: commands succeeded congratulations :) [TASKS] Scanning folder '/mnt/data/jenkins/workspace/cophi_toolbox' for files matching the pattern '*, src/**/*, tests/**/*, docs/**/*' - excludes: .*/**/* [TASKS] Found 64 files to scan for tasks [TASKS] Found 3 open tasks. <Git Blamer> Using GitBlamer to create author and commit information for all warnings. <Git Blamer> GIT_COMMIT=a07dba4fe103788d0ba5e5030834d5fcf57f93b6, workspace=/mnt/data/jenkins/workspace/cophi_toolbox > /usr/bin/git rev-parse a07dba4fe103788d0ba5e5030834d5fcf57f93b6^{commit} # timeout=10 [TASKS] Computing warning deltas based on reference build #58 [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. 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