Started by GitHub push by severinsimmler Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/cophi_toolbox > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/cophi-wue/cophi-toolbox # timeout=10 Fetching upstream changes from git://github.com/cophi-wue/cophi-toolbox > /usr/bin/git --version # timeout=10 using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/cophi-wue/cophi-toolbox +refs/heads/*:refs/remotes/origin/* Seen branch in repository origin/ddw Seen branch in repository origin/gh-pages Seen branch in repository origin/master Seen branch in repository origin/oop Seen branch in repository origin/testing Seen 5 remote branches > /usr/bin/git show-ref --tags -d # timeout=10 Checking out Revision d97ee7e65718e77223d3b295dafcc9b619d45233 (origin/testing) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f d97ee7e65718e77223d3b295dafcc9b619d45233 Commit message: "fix: #27" > /usr/bin/git rev-list --no-walk d4e302f176c9e6c09d402535df3583fe872cbef0 # timeout=10 [cophi_toolbox] $ /bin/sh -xe /tmp/jenkins6429868218655928387.sh + tox GLOB sdist-make: /mnt/data/jenkins/workspace/cophi_toolbox/setup.py py34 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py34 ERROR: InterpreterNotFound: python3.4 py35 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.7.zip py35 installed: atomicwrites==1.2.1,attrs==18.2.0,cophi==1.0.7,coverage==4.5.1,lxml==4.2.5,more-itertools==4.3.0,numpy==1.15.3,pandas==0.23.4,pathlib2==2.3.2,pluggy==0.8.0,py==1.7.0,pytest==3.9.3,pytest-cov==2.6.0,python-dateutil==2.7.5,pytz==2018.6,regex==2018.8.29,six==1.11.0 py35 runtests: PYTHONHASHSEED='1549686424' py35 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.5.6, pytest-3.9.3, py-1.7.0, pluggy-0.8.0 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.6.0 collected 88 items tests/test_api.py .. [ 2%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 86%] ....... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.5.6-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ========================== 88 passed in 2.17 seconds =========================== py36 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.7.zip py36 installed: atomicwrites==1.2.1,attrs==18.2.0,cophi==1.0.7,coverage==4.5.1,lxml==4.2.5,more-itertools==4.3.0,numpy==1.15.3,pandas==0.23.4,pluggy==0.8.0,py==1.7.0,pytest==3.9.3,pytest-cov==2.6.0,python-dateutil==2.7.5,pytz==2018.6,regex==2018.8.29,six==1.11.0 py36 runtests: PYTHONHASHSEED='1549686424' py36 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.6.7, pytest-3.9.3, py-1.7.0, pluggy-0.8.0 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.6.0 collected 88 items tests/test_api.py .. [ 2%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 86%] ....... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.6.7-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ========================== 88 passed in 2.12 seconds =========================== py37 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.7.zip py37 installed: atomicwrites==1.2.1,attrs==18.2.0,cophi==1.0.7,coverage==4.5.1,lxml==4.2.5,more-itertools==4.3.0,numpy==1.15.3,pandas==0.23.4,pluggy==0.8.0,py==1.7.0,pytest==3.9.3,pytest-cov==2.6.0,python-dateutil==2.7.5,pytz==2018.6,regex==2018.8.29,six==1.11.0 py37 runtests: PYTHONHASHSEED='1549686424' py37 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.7.1, pytest-3.9.3, py-1.7.0, pluggy-0.8.0 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.6.0 collected 88 items tests/test_api.py .. [ 2%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 86%] ....... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.7.1-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml =============================== warnings summary =============================== .tox/py37/lib/python3.7/site-packages/pandas/core/dtypes/inference.py:6 /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py37/lib/python3.7/site-packages/pandas/core/dtypes/inference.py:6: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import Iterable .tox/py37/lib/python3.7/site-packages/pandas/core/tools/datetimes.py:3 /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py37/lib/python3.7/site-packages/pandas/core/tools/datetimes.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import MutableMapping tests/test_model.py::TestCorpus::()::test_map_metadata /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py37/lib/python3.7/site-packages/pandas/core/common.py:471: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working if not issubclass(into, collections.Mapping): -- Docs: https://docs.pytest.org/en/latest/warnings.html ==================== 88 passed, 3 warnings in 1.83 seconds ===================== docs inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.0.7.zip docs installed: alabaster==0.7.12,Babel==2.6.0,certifi==2018.10.15,chardet==3.0.4,cophi==1.0.7,docutils==0.14,idna==2.7,imagesize==1.1.0,Jinja2==2.10,lxml==4.2.5,MarkupSafe==1.0,numpy==1.15.3,packaging==18.0,pandas==0.23.4,Pygments==2.2.0,pyparsing==2.2.2,python-dateutil==2.7.5,pytz==2018.6,regex==2018.8.29,requests==2.20.0,six==1.11.0,snowballstemmer==1.2.1,Sphinx==1.8.1,sphinxcontrib-websupport==1.1.0,urllib3==1.24 docs runtests: PYTHONHASHSEED='1549686424' docs runtests: commands[0] | sphinx-build -E -b html docs dist/docs Running Sphinx v1.8.1 loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 3 source files that are out of date updating environment: 3 added, 0 changed, 0 removed reading sources... [ 33%] index reading sources... [ 66%] reference/cophi-toolbox reading sources... [100%] reference/index /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/cophi_toolbox/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in dist/docs. docs runtests: commands[1] | sphinx-build -b linkcheck docs dist/docs Running Sphinx v1.8.1 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [linkcheck]: targets for 3 source files that are out of date updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] reference/cophi-toolbox /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index build succeeded, 4 warnings. Look for any errors in the above output or in dist/docs/output.txt ___________________________________ summary ____________________________________ SKIPPED: py34: InterpreterNotFound: python3.4 py35: commands succeeded py36: commands succeeded py37: commands succeeded docs: commands succeeded congratulations :) [TASKS] Scanning folder '/mnt/data/jenkins/workspace/cophi_toolbox' for files matching the pattern '*, src/**/*, tests/**/*, docs/**/*' - excludes: .*/**/* [TASKS] Found 64 files to scan for tasks [TASKS] Found 3 open tasks. <Git Blamer> Using GitBlamer to create author and commit information for all warnings. <Git Blamer> GIT_COMMIT=d97ee7e65718e77223d3b295dafcc9b619d45233, workspace=/mnt/data/jenkins/workspace/cophi_toolbox > /usr/bin/git rev-parse d97ee7e65718e77223d3b295dafcc9b619d45233^{commit} # timeout=10 [TASKS] Computing warning deltas based on reference build #62 [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@76528e9e[description=A repository containing general functions for processing and accessing text corpora,homepage=<null>,name=cophi-toolbox,license=<null>,fork=false,size=507,milestones={},language=Jupyter Notebook,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Fri, 23 Nov 2018 12:57:50 GMT], ETag=[W/"53e3051742795bd0d5395f5b990ce51d"], Last-Modified=[Wed, 07 Nov 2018 22:46:06 GMT], OkHttp-Received-Millis=[1542977870624], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1542977870449], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[D839:061B:51ACC9:C885BE:5BF7F94E], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1542981470], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/cophi-wue/cophi-toolbox,id=113045733]] (sha:d97ee7e) with context:cophi_toolbox Setting commit status on GitHub for https://github.com/cophi-wue/cophi-toolbox/commit/d97ee7e65718e77223d3b295dafcc9b619d45233 Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: SUCCESS