Started by GitHub push by severinsimmler Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/cophi_toolbox > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/cophi-wue/cophi-toolbox # timeout=10 Fetching upstream changes from git://github.com/cophi-wue/cophi-toolbox > /usr/bin/git --version # timeout=10 using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/cophi-wue/cophi-toolbox +refs/heads/*:refs/remotes/origin/* Seen branch in repository origin/ddw Seen branch in repository origin/gh-pages Seen branch in repository origin/master Seen branch in repository origin/oop Seen branch in repository origin/testing Seen 5 remote branches > /usr/bin/git show-ref --tags -d # timeout=10 Checking out Revision 5204eb632f071846a3070db02c8f5b6c054dfba6 (origin/testing) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 5204eb632f071846a3070db02c8f5b6c054dfba6 Commit message: "chore: move export functions" > /usr/bin/git rev-list --no-walk eba6bd7ce1631c22ee2e56ffbc2c251f1521f858 # timeout=10 [cophi_toolbox] $ /bin/sh -xe /tmp/jenkins7563878030373660915.sh + tox GLOB sdist-make: /mnt/data/jenkins/workspace/cophi_toolbox/setup.py py34 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py34 ERROR: InterpreterNotFound: python3.4 py35 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.1.0.zip py35 installed: atomicwrites==1.2.1,attrs==18.2.0,cophi==1.1.0,coverage==4.5.2,lxml==4.2.5,more-itertools==4.3.0,numpy==1.15.4,pandas==0.23.4,pathlib2==2.3.2,pkg-resources==0.0.0,pluggy==0.8.0,py==1.7.0,pytest==4.0.0,pytest-cov==2.6.0,python-dateutil==2.7.5,pytz==2018.7,regex==2018.11.22,six==1.11.0 py35 runtests: PYTHONHASHSEED='3351563218' py35 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.5.3, pytest-4.0.0, py-1.7.0, pluggy-0.8.0 rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.6.0 collected 91 items tests/test_api.py ..F [ 3%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 84%] ....... [ 92%] tests/test_utils.py .....EE [100%] ==================================== ERRORS ==================================== _______________________ ERROR at setup of test_svmlight ________________________ file /mnt/data/jenkins/workspace/cophi_toolbox/tests/test_utils.py, line 47 def test_svmlight(self, corpus): E fixture 'self' not found > available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, corpus, cov, doctest_namespace, document, monkeypatch, no_cover, pytestconfig, record_property, record_xml_attribute, record_xml_property, recwarn, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory > use 'pytest --fixtures [testpath]' for help on them. /mnt/data/jenkins/workspace/cophi_toolbox/tests/test_utils.py:47 _______________________ ERROR at setup of test_plaintext _______________________ file /mnt/data/jenkins/workspace/cophi_toolbox/tests/test_utils.py, line 54 def test_plaintext(self, corpus): E fixture 'self' not found > available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, corpus, cov, doctest_namespace, document, monkeypatch, no_cover, pytestconfig, record_property, record_xml_attribute, record_xml_property, recwarn, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory > use 'pytest --fixtures [testpath]' for help on them. /mnt/data/jenkins/workspace/cophi_toolbox/tests/test_utils.py:54 =================================== FAILURES =================================== _________________________________ test_export __________________________________ corpus = <cophi.model.Corpus object at 0x7f5f1dda50b8> def test_export(corpus): output = pathlib.Path("corpus.svmlight") > cophi.export(corpus.dtm, output, "svmlight") tests/test_api.py:35: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ src/cophi/api.py:98: in export cophi.utils.export_svmlight(corpus, filepath) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ dtm = <function corpus at 0x7f5f1f5a58c8> filepath = PosixPath('corpus.svmlight') def export_svmlight(dtm, filepath): """Export document-term matrix to SVMLight format. Parameters: dtm: Document-term matrix. filepath: Path to output file. """ with pathlib.Path(filepath).open("w", encoding="utf-8") as file: > for title, document in dtm.iterrows(): E AttributeError: 'function' object has no attribute 'iterrows' src/cophi/utils.py:126: AttributeError --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.5.3-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ================= 1 failed, 88 passed, 2 error in 0.98 seconds ================= ERROR: InvocationError: '/mnt/data/jenkins/workspace/cophi_toolbox/.tox/py35/bin/pytest' py36 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py36 ERROR: InterpreterNotFound: python3.6 py37 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py37 ERROR: InterpreterNotFound: python3.7 docs inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/dist/cophi-1.1.0.zip docs installed: alabaster==0.7.12,Babel==2.6.0,certifi==2018.10.15,chardet==3.0.4,cophi==1.1.0,docutils==0.14,idna==2.7,imagesize==1.1.0,Jinja2==2.10,lxml==4.2.5,MarkupSafe==1.1.0,numpy==1.15.4,packaging==18.0,pandas==0.23.4,pkg-resources==0.0.0,Pygments==2.2.0,pyparsing==2.3.0,python-dateutil==2.7.5,pytz==2018.7,regex==2018.11.22,requests==2.20.1,six==1.11.0,snowballstemmer==1.2.1,Sphinx==1.8.2,sphinxcontrib-websupport==1.1.0,urllib3==1.24.1 docs runtests: PYTHONHASHSEED='3351563218' docs runtests: commands[0] | sphinx-build -E -b html docs dist/docs Running Sphinx v1.8.2 loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 3 source files that are out of date updating environment: 3 added, 0 changed, 0 removed reading sources... [ 33%] index reading sources... [ 66%] reference/cophi-toolbox reading sources... [100%] reference/index /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/cophi_toolbox/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in dist/docs. docs runtests: commands[1] | sphinx-build -b linkcheck docs dist/docs Running Sphinx v1.8.2 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [linkcheck]: targets for 3 source files that are out of date updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] reference/cophi-toolbox /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index build succeeded, 4 warnings. Look for any errors in the above output or in dist/docs/output.txt ___________________________________ summary ____________________________________ SKIPPED: py34: InterpreterNotFound: python3.4 ERROR: py35: commands failed SKIPPED: py36: InterpreterNotFound: python3.6 SKIPPED: py37: InterpreterNotFound: python3.7 docs: commands succeeded Build step 'Execute shell' marked build as failure [TASKS] Skipping publisher since build result is FAILURE Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] ERROR on repos [GHRepository@6ae1f328[description=A repository containing general functions for processing and accessing text corpora,homepage=<null>,name=cophi-toolbox,license=<null>,fork=false,size=461,milestones={},language=Jupyter Notebook,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Sun, 23 Dec 2018 19:34:50 GMT], ETag=[W/"38a4b4ac563cb5e324128c23d942ec49"], Last-Modified=[Sun, 23 Dec 2018 19:08:12 GMT], OkHttp-Received-Millis=[1545593690495], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1545593690337], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[B3F4:1F55:2650C3F:5C48213:5C1FE35A], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4995], X-RateLimit-Reset=[1545595708], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/cophi-wue/cophi-toolbox,id=113045733]] (sha:5204eb6) with context:cophi_toolbox Setting commit status on GitHub for https://github.com/cophi-wue/cophi-toolbox/commit/5204eb632f071846a3070db02c8f5b6c054dfba6 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE