Console Output
Started by user Thorsten Vitt
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
> git --version # timeout=10
using GIT_ASKPASS to set credentials
> git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
> git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
> git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 0d2f5407be9d9538020a66c5062cc4bacc636310 (refs/remotes/origin/testing)
> git config core.sparsecheckout # timeout=10
> git checkout -f 0d2f5407be9d9538020a66c5062cc4bacc636310
> git rev-list 0d2f5407be9d9538020a66c5062cc4bacc636310 # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda373003727360237150.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages
+ pip install -U --pre jupyter
Collecting jupyter
Using cached jupyter-1.0.0-py2.py3-none-any.whl
Collecting jupyter-console (from jupyter)
Using cached jupyter_console-5.0.0-py2.py3-none-any.whl
Collecting nbconvert (from jupyter)
Using cached nbconvert-5.1.1-py2.py3-none-any.whl
Collecting qtconsole (from jupyter)
Using cached qtconsole-4.2.1-py2.py3-none-any.whl
Collecting ipywidgets (from jupyter)
Using cached ipywidgets-6.0.0b6-py2.py3-none-any.whl
Collecting ipykernel (from jupyter)
Using cached ipykernel-4.5.2-py2.py3-none-any.whl
Collecting notebook (from jupyter)
Using cached notebook-4.3.1-py2.py3-none-any.whl
Collecting ipython (from jupyter-console->jupyter)
Using cached ipython-5.1.0-py3-none-any.whl
Collecting jupyter-client (from jupyter-console->jupyter)
Using cached jupyter_client-4.4.0-py2.py3-none-any.whl
Collecting pygments (from jupyter-console->jupyter)
Using cached Pygments-2.2.0-py2.py3-none-any.whl
Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter)
Using cached prompt_toolkit-1.0.9-py3-none-any.whl
Collecting bleach (from nbconvert->jupyter)
Using cached bleach-1.5.0-py2.py3-none-any.whl
Collecting testpath (from nbconvert->jupyter)
Using cached testpath-0.3-py2.py3-none-any.whl
Collecting nbformat (from nbconvert->jupyter)
Using cached nbformat-4.2.0-py2.py3-none-any.whl
Collecting traitlets>=4.2 (from nbconvert->jupyter)
Using cached traitlets-4.3.1-py2.py3-none-any.whl
Collecting entrypoints>=0.2.2 (from nbconvert->jupyter)
Using cached entrypoints-0.2.2-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter)
Collecting jinja2 (from nbconvert->jupyter)
Using cached Jinja2-2.9.4-py2.py3-none-any.whl
Collecting mistune!=0.6 (from nbconvert->jupyter)
Using cached mistune-0.7.3-py2.py3-none-any.whl
Collecting jupyter-core (from nbconvert->jupyter)
Using cached jupyter_core-4.2.1-py2.py3-none-any.whl
Collecting widgetsnbextension~=2.0.0b8 (from ipywidgets->jupyter)
Using cached widgetsnbextension-2.0.0b13-py2.py3-none-any.whl
Collecting tornado>=4.0 (from ipykernel->jupyter)
Collecting ipython-genutils (from notebook->jupyter)
Using cached ipython_genutils-0.1.0-py2.py3-none-any.whl
Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter)
Requirement already up-to-date: setuptools>=18.5 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython->jupyter-console->jupyter)
Collecting simplegeneric>0.8 (from ipython->jupyter-console->jupyter)
Collecting pexpect; sys_platform != "win32" (from ipython->jupyter-console->jupyter)
Using cached pexpect-4.2.1-py2.py3-none-any.whl
Collecting pickleshare (from ipython->jupyter-console->jupyter)
Using cached pickleshare-0.7.4-py2.py3-none-any.whl
Collecting decorator (from ipython->jupyter-console->jupyter)
Using cached decorator-4.0.11-py2.py3-none-any.whl
Collecting pyzmq>=13 (from jupyter-client->jupyter-console->jupyter)
Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter)
Using cached wcwidth-0.1.7-py2.py3-none-any.whl
Requirement already up-to-date: six>=1.9.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter)
Collecting html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 (from bleach->nbconvert->jupyter)
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbconvert->jupyter)
Using cached jsonschema-2.5.1-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from jinja2->nbconvert->jupyter)
Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter)
Using cached ptyprocess-0.5.1-py2.py3-none-any.whl
Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools>=18.5->ipython->jupyter-console->jupyter)
Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools>=18.5->ipython->jupyter-console->jupyter)
Requirement already up-to-date: pyparsing in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from packaging>=16.8->setuptools>=18.5->ipython->jupyter-console->jupyter)
Installing collected packages: ipython-genutils, decorator, traitlets, wcwidth, prompt-toolkit, simplegeneric, pygments, ptyprocess, pexpect, pickleshare, ipython, jupyter-core, pyzmq, jupyter-client, tornado, ipykernel, jupyter-console, html5lib, bleach, testpath, jsonschema, nbformat, entrypoints, pandocfilters, MarkupSafe, jinja2, mistune, nbconvert, qtconsole, terminado, notebook, widgetsnbextension, ipywidgets, jupyter
Successfully installed MarkupSafe-0.23 bleach-1.5.0 decorator-4.0.11 entrypoints-0.2.2 html5lib-0.9999999 ipykernel-4.5.2 ipython-5.1.0 ipython-genutils-0.1.0 ipywidgets-6.0.0b6 jinja2-2.9.4 jsonschema-2.5.1 jupyter-1.0.0 jupyter-client-4.4.0 jupyter-console-5.0.0 jupyter-core-4.2.1 mistune-0.7.3 nbconvert-5.1.1 nbformat-4.2.0 notebook-4.3.1 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.9 ptyprocess-0.5.1 pygments-2.2.0 pyzmq-16.0.2 qtconsole-4.2.1 simplegeneric-0.8.1 terminado-0.6 testpath-0.3 tornado-4.4.2 traitlets-4.3.1 wcwidth-0.1.7 widgetsnbextension-2.0.0b13
+ jupyter kernelspec install-self --user
[InstallNativeKernelSpec] WARNING | `jupyter kernelspec install-self` is DEPRECATED as of 4.0. You probably want `ipython kernel install` to install the IPython kernelspec.
[InstallNativeKernelSpec] Installed kernelspec python3 in /mnt/data/jenkins/.local/share/jupyter/kernels/python3
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting nose (from -r requirements-dev.txt (line 2))
Using cached nose-1.3.7-py3-none-any.whl
Collecting nosexcover (from -r requirements-dev.txt (line 3))
Using cached nosexcover-1.0.11-py2.py3-none-any.whl
Requirement already up-to-date: jupyter in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 4))
Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached pandas-0.19.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting matplotlib==1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached matplotlib-1.5.3-cp35-cp35m-manylinux1_x86_64.whl
Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached numpy-1.12.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached scipy-0.18.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting werkzeug>=0.11.15 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached Werkzeug-0.11.15-py2.py3-none-any.whl
Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached Flask-0.12-py2.py3-none-any.whl
Collecting pyLDAvis>=2.0.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3))
Using cached coverage-4.3.4-cp35-cp35m-manylinux1_x86_64.whl
Requirement already up-to-date: notebook in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: nbconvert in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipywidgets in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: qtconsole in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jupyter-console in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipykernel in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4))
Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached pytz-2016.10-py2.py3-none-any.whl
Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached python_dateutil-2.6.0-py2.py3-none-any.whl
Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting cycler (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached cycler-0.10.0-py2.py3-none-any.whl
Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached click-6.7-py2.py3-none-any.whl
Requirement already up-to-date: Jinja2>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting joblib>=0.8.4 (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached joblib-0.10.3-py2.py3-none-any.whl
Collecting pytest (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached pytest-3.0.6-py2.py3-none-any.whl
Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting funcy (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting numexpr (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached numexpr-2.6.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting future (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: terminado>=0.3.3; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jupyter-core in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: traitlets in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: tornado>=4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: nbformat in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jupyter-client in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: mistune!=0.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: testpath in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: bleach in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: entrypoints>=0.2.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pandocfilters>=1.4.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pygments in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: ipython>=4.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: widgetsnbextension~=2.0.0b8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: prompt-toolkit<2.0.0,>=1.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Collecting requests (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached requests-2.13.0-py2.py3-none-any.whl
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached boto-2.45.0-py2.py3-none-any.whl
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Collecting py>=1.4.29 (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Using cached py-1.4.32-py2.py3-none-any.whl
Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: ptyprocess in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: decorator in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from traitlets->notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbformat->notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pyzmq>=13 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-client->notebook->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pexpect; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1))
Installing collected packages: nose, coverage, nosexcover, pytz, python-dateutil, numpy, pandas, regex, requests, boto, bz2file, smart-open, scipy, gensim, cycler, matplotlib, werkzeug, itsdangerous, click, flask, joblib, py, pytest, funcy, numexpr, future, pyLDAvis, dariah-topics
Running setup.py develop for dariah-topics
Successfully installed boto-2.45.0 bz2file-0.98 click-6.7 coverage-4.3.4 cycler-0.10.0 dariah-topics flask-0.12 funcy-1.7.2 future-0.16.0 gensim-0.13.4.1 itsdangerous-0.24 joblib-0.10.3 matplotlib-1.5.3 nose-1.3.7 nosexcover-1.0.11 numexpr-2.6.1 numpy-1.12.0 pandas-0.19.2 py-1.4.32 pyLDAvis-2.1.0 pytest-3.0.6 python-dateutil-2.6.0 pytz-2016.10 regex-2017.1.17 requests-2.13.0 scipy-0.18.1 smart-open-1.3.5 werkzeug-0.11.15
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing dariah_topics.egg-info/PKG-INFO
writing top-level names to dariah_topics.egg-info/top_level.txt
writing requirements to dariah_topics.egg-info/requires.txt
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:333: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0'
normalized_version,
warning: sdist: standard file not found: should have one of README, README.rst, README.txt
running check
warning: check: missing required meta-data: url
creating dariah_topics-0.2.0.dev0
creating dariah_topics-0.2.0.dev0/dariah_topics
creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying files to dariah_topics-0.2.0.dev0...
copying setup.cfg -> dariah_topics-0.2.0.dev0
copying setup.py -> dariah_topics-0.2.0.dev0
copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info
Writing dariah_topics-0.2.0.dev0/setup.cfg
Creating tar archive
removing 'dariah_topics-0.2.0.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL
+ nosetests
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead
spec = inspect.getargspec(func)
.E..
======================================================================
ERROR: Tries to run the integration test notebook using jupyter.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 16, in jupyter_integration_test
stderr=STDOUT, universal_newlines=True)
File "/usr/lib/python3.5/subprocess.py", line 316, in check_output
**kwargs).stdout
File "/usr/lib/python3.5/subprocess.py", line 398, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1
-------------------- >> begin captured logging << --------------------
root: ERROR: [NbConvertApp] Converting notebook /mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb to html
[NbConvertApp] Executing notebook with kernel: python3
[NbConvertApp] ERROR | Error while converting '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb'
Traceback (most recent call last):
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 373, in export_single_notebook
output, resources = self.exporter.from_filename(notebook_filename, resources=resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 171, in from_filename
return self.from_file(f, resources=resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 189, in from_file
return self.from_notebook_node(nbformat.read(file_stream, as_version=4), resources=resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/html.py", line 69, in from_notebook_node
return super(HTMLExporter, self).from_notebook_node(nb, resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/templateexporter.py", line 236, in from_notebook_node
nb_copy, resources = super(TemplateExporter, self).from_notebook_node(nb, resources, **kw)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 131, in from_notebook_node
nb_copy, resources = self._preprocess(nb_copy, resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 308, in _preprocess
nbc, resc = preprocessor(nbc, resc)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 47, in __call__
return self.preprocess(nb,resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 211, in preprocess
nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 70, in preprocess
nb.cells[index], resources = self.preprocess_cell(cell, resources, index)
File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 242, in preprocess_cell
raise CellExecutionError(msg)
nbconvert.preprocessors.execute.CellExecutionError: An error occurred while executing the following cell:
------------------
import os.path
basepath = os.path.abspath(os.path.join(".", os.pardir))
with open(os.path.join(basepath, "Topics/tutorial_supplementals/stopwords/en"), 'r', encoding = 'utf-8') as f:
stopword_list = f.read().split('\n')
stopword_list = set(stopword_list)
------------------
FileNotFoundError: [Errno 2] No such file or directory: '/mnt/data/jenkins/workspace/Topics/tutorial_supplementals/stopwords/en'
--------------------- >> end captured logging << ---------------------
Name Stmts Miss Cover
-----------------------------------------------------
dariah_topics.py 0 0 100%
dariah_topics/mallet.py 77 59 23%
dariah_topics/model_creation.py 60 43 28%
dariah_topics/preprocessing.py 127 35 72%
dariah_topics/visualization.py 113 89 21%
-----------------------------------------------------
TOTAL 377 226 40%
----------------------------------------------------------------------
Ran 4 tests in 4.874s
FAILED (errors=1)
Build step 'Virtualenv Builder' marked build as failure
Recording test results
Skipping Cobertura coverage report as build was not UNSTABLE or better ...
Sending e-mails to: noreply@github.com thorsten.vitt@uni-wuerzburg.de cyberpillip@gmail.com sina.bock@stud-mail.uni-wuerzburg.de
[Set GitHub commit status (universal)] PENDING on repos [GHRepository@555ff88a[description=<null>,homepage=<null>,name=Topics,license=<null>,fork=true,size=21659,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:0d2f540) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/0d2f5407be9d9538020a66c5062cc4bacc636310
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: FAILURE
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