Regression

integration_test.jupyter_integration_test (from nosetests)

Failing for the past 1 build (Since #254 )
Took 1 min 0 sec.

Error Message

Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/Mallet.ipynb']' returned non-zero exit status 255
-------------------- >> begin captured logging << --------------------
root: ERROR: This application is used to convert notebook files (*.ipynb) to various other
formats.

WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.

Options
-------

Arguments that take values are actually convenience aliases to full
Configurables, whose aliases are listed on the help line. For more information
on full configurables, see '--help-all'.

--stdin
    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'
--stdout
    Write notebook output to stdout instead of files.
-y
    Answer yes to any questions instead of prompting.
--execute
    Execute the notebook prior to export.
--generate-config
    generate default config file
--debug
    set log level to logging.DEBUG (maximize logging output)
--no-prompt
    Exclude input and output prompts from converted document.
--inplace
    Run nbconvert in place, overwriting the existing notebook (only 
    relevant when converting to notebook format)
--allow-errors
    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.
--to=<Unicode> (NbConvertApp.export_format)
    Default: 'html'
    The export format to be used, either one of the built-in formats, or a
    dotted object name that represents the import path for an `Exporter` class
--nbformat=<Enum> (NotebookExporter.nbformat_version)
    Default: 4
    Choices: [1, 2, 3, 4]
    The nbformat version to write. Use this to downgrade notebooks.
--log-level=<Enum> (Application.log_level)
    Default: 30
    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')
    Set the log level by value or name.
--output-dir=<Unicode> (FilesWriter.build_directory)
    Default: ''
    Directory to write output(s) to. Defaults to output to the directory of each
    notebook. To recover previous default behaviour (outputting to the current
    working directory) use . as the flag value.
--template=<Unicode> (TemplateExporter.template_file)
    Default: ''
    Name of the template file to use
--post=<DottedOrNone> (NbConvertApp.postprocessor_class)
    Default: ''
    PostProcessor class used to write the results of the conversion
--config=<Unicode> (JupyterApp.config_file)
    Default: ''
    Full path of a config file.
--writer=<DottedObjectName> (NbConvertApp.writer_class)
    Default: 'FilesWriter'
    Writer class used to write the  results of the conversion
--output=<Unicode> (NbConvertApp.output_base)
    Default: ''
    overwrite base name use for output files. can only be used when converting
    one notebook at a time.
--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)
    Default: ''
    The URL prefix for reveal.js. This can be a a relative URL for a local copy
    of reveal.js, or point to a CDN.
    For speaker notes to work, a local reveal.js prefix must be used.

To see all available configurables, use `--help-all`

Examples
--------

    The simplest way to use nbconvert is
    
    > jupyter nbconvert mynotebook.ipynb
    
    which will convert mynotebook.ipynb to the default format (probably HTML).
    
    You can specify the export format with `--to`.
    Options include ['asciidoc', 'custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']
    
    > jupyter nbconvert --to latex mynotebook.ipynb
    
    Both HTML and LaTeX support multiple output templates. LaTeX includes
    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You
    can specify the flavor of the format used.
    
    > jupyter nbconvert --to html --template basic mynotebook.ipynb
    
    You can also pipe the output to stdout, rather than a file
    
    > jupyter nbconvert mynotebook.ipynb --stdout
    
    PDF is generated via latex
    
    > jupyter nbconvert mynotebook.ipynb --to pdf
    
    You can get (and serve) a Reveal.js-powered slideshow
    
    > jupyter nbconvert myslides.ipynb --to slides --post serve
    
    Multiple notebooks can be given at the command line in a couple of 
    different ways:
    
    > jupyter nbconvert notebook*.ipynb
    > jupyter nbconvert notebook1.ipynb notebook2.ipynb
    
    or you can specify the notebooks list in a config file, containing::
    
        c.NbConvertApp.notebooks = ["my_notebook.ipynb"]
    
    > jupyter nbconvert --config mycfg.py


root: ERROR: This application is used to convert notebook files (*.ipynb) to various other
formats.

WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.

Options
-------

Arguments that take values are actually convenience aliases to full
Configurables, whose aliases are listed on the help line. For more information
on full configurables, see '--help-all'.

-y
    Answer yes to any questions instead of prompting.
--execute
    Execute the notebook prior to export.
--debug
    set log level to logging.DEBUG (maximize logging output)
--generate-config
    generate default config file
--no-prompt
    Exclude input and output prompts from converted document.
--stdin
    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'
--inplace
    Run nbconvert in place, overwriting the existing notebook (only 
    relevant when converting to notebook format)
--stdout
    Write notebook output to stdout instead of files.
--allow-errors
    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.
--output=<Unicode> (NbConvertApp.output_base)
    Default: ''
    overwrite base name use for output files. can only be used when converting
    one notebook at a time.
--template=<Unicode> (TemplateExporter.template_file)
    Default: ''
    Name of the template file to use
--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)
    Default: ''
    The URL prefix for reveal.js. This can be a a relative URL for a local copy
    of reveal.js, or point to a CDN.
    For speaker notes to work, a local reveal.js prefix must be used.
--writer=<DottedObjectName> (NbConvertApp.writer_class)
    Default: 'FilesWriter'
    Writer class used to write the  results of the conversion
--to=<Unicode> (NbConvertApp.export_format)
    Default: 'html'
    The export format to be used, either one of the built-in formats, or a
    dotted object name that represents the import path for an `Exporter` class
--nbformat=<Enum> (NotebookExporter.nbformat_version)
    Default: 4
    Choices: [1, 2, 3, 4]
    The nbformat version to write. Use this to downgrade notebooks.
--post=<DottedOrNone> (NbConvertApp.postprocessor_class)
    Default: ''
    PostProcessor class used to write the results of the conversion
--output-dir=<Unicode> (FilesWriter.build_directory)
    Default: ''
    Directory to write output(s) to. Defaults to output to the directory of each
    notebook. To recover previous default behaviour (outputting to the current
    working directory) use . as the flag value.
--config=<Unicode> (JupyterApp.config_file)
    Default: ''
    Full path of a config file.
--log-level=<Enum> (Application.log_level)
    Default: 30
    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')
    Set the log level by value or name.

To see all available configurables, use `--help-all`

Examples
--------

    The simplest way to use nbconvert is
    
    > jupyter nbconvert mynotebook.ipynb
    
    which will convert mynotebook.ipynb to the default format (probably HTML).
    
    You can specify the export format with `--to`.
    Options include ['asciidoc', 'custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']
    
    > jupyter nbconvert --to latex mynotebook.ipynb
    
    Both HTML and LaTeX support multiple output templates. LaTeX includes
    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You
    can specify the flavor of the format used.
    
    > jupyter nbconvert --to html --template basic mynotebook.ipynb
    
    You can also pipe the output to stdout, rather than a file
    
    > jupyter nbconvert mynotebook.ipynb --stdout
    
    PDF is generated via latex
    
    > jupyter nbconvert mynotebook.ipynb --to pdf
    
    You can get (and serve) a Reveal.js-powered slideshow
    
    > jupyter nbconvert myslides.ipynb --to slides --post serve
    
    Multiple notebooks can be given at the command line in a couple of 
    different ways:
    
    > jupyter nbconvert notebook*.ipynb
    > jupyter nbconvert notebook1.ipynb notebook2.ipynb
    
    or you can specify the notebooks list in a config file, containing::
    
        c.NbConvertApp.notebooks = ["my_notebook.ipynb"]
    
    > jupyter nbconvert --config mycfg.py


--------------------- >> end captured logging << ---------------------

Stacktrace

  File "/usr/lib/python3.5/unittest/case.py", line 59, in testPartExecutor
    yield
  File "/usr/lib/python3.5/unittest/case.py", line 601, in run
    testMethod()
  File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest
    self.test(*self.arg)
  File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 59, in jupyter_integration_test
    stderr=STDOUT, universal_newlines=True)
  File "/usr/lib/python3.5/subprocess.py", line 316, in check_output
    **kwargs).stdout
  File "/usr/lib/python3.5/subprocess.py", line 398, in run
    output=stdout, stderr=stderr)
Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/Mallet.ipynb']' returned non-zero exit status 255
-------------------- >> begin captured logging << --------------------
root: ERROR: This application is used to convert notebook files (*.ipynb) to various other
formats.

WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.

Options
-------

Arguments that take values are actually convenience aliases to full
Configurables, whose aliases are listed on the help line. For more information
on full configurables, see '--help-all'.

--stdin
    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'
--stdout
    Write notebook output to stdout instead of files.
-y
    Answer yes to any questions instead of prompting.
--execute
    Execute the notebook prior to export.
--generate-config
    generate default config file
--debug
    set log level to logging.DEBUG (maximize logging output)
--no-prompt
    Exclude input and output prompts from converted document.
--inplace
    Run nbconvert in place, overwriting the existing notebook (only 
    relevant when converting to notebook format)
--allow-errors
    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.
--to=<Unicode> (NbConvertApp.export_format)
    Default: 'html'
    The export format to be used, either one of the built-in formats, or a
    dotted object name that represents the import path for an `Exporter` class
--nbformat=<Enum> (NotebookExporter.nbformat_version)
    Default: 4
    Choices: [1, 2, 3, 4]
    The nbformat version to write. Use this to downgrade notebooks.
--log-level=<Enum> (Application.log_level)
    Default: 30
    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')
    Set the log level by value or name.
--output-dir=<Unicode> (FilesWriter.build_directory)
    Default: ''
    Directory to write output(s) to. Defaults to output to the directory of each
    notebook. To recover previous default behaviour (outputting to the current
    working directory) use . as the flag value.
--template=<Unicode> (TemplateExporter.template_file)
    Default: ''
    Name of the template file to use
--post=<DottedOrNone> (NbConvertApp.postprocessor_class)
    Default: ''
    PostProcessor class used to write the results of the conversion
--config=<Unicode> (JupyterApp.config_file)
    Default: ''
    Full path of a config file.
--writer=<DottedObjectName> (NbConvertApp.writer_class)
    Default: 'FilesWriter'
    Writer class used to write the  results of the conversion
--output=<Unicode> (NbConvertApp.output_base)
    Default: ''
    overwrite base name use for output files. can only be used when converting
    one notebook at a time.
--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)
    Default: ''
    The URL prefix for reveal.js. This can be a a relative URL for a local copy
    of reveal.js, or point to a CDN.
    For speaker notes to work, a local reveal.js prefix must be used.

To see all available configurables, use `--help-all`

Examples
--------

    The simplest way to use nbconvert is
    
    > jupyter nbconvert mynotebook.ipynb
    
    which will convert mynotebook.ipynb to the default format (probably HTML).
    
    You can specify the export format with `--to`.
    Options include ['asciidoc', 'custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']
    
    > jupyter nbconvert --to latex mynotebook.ipynb
    
    Both HTML and LaTeX support multiple output templates. LaTeX includes
    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You
    can specify the flavor of the format used.
    
    > jupyter nbconvert --to html --template basic mynotebook.ipynb
    
    You can also pipe the output to stdout, rather than a file
    
    > jupyter nbconvert mynotebook.ipynb --stdout
    
    PDF is generated via latex
    
    > jupyter nbconvert mynotebook.ipynb --to pdf
    
    You can get (and serve) a Reveal.js-powered slideshow
    
    > jupyter nbconvert myslides.ipynb --to slides --post serve
    
    Multiple notebooks can be given at the command line in a couple of 
    different ways:
    
    > jupyter nbconvert notebook*.ipynb
    > jupyter nbconvert notebook1.ipynb notebook2.ipynb
    
    or you can specify the notebooks list in a config file, containing::
    
        c.NbConvertApp.notebooks = ["my_notebook.ipynb"]
    
    > jupyter nbconvert --config mycfg.py


root: ERROR: This application is used to convert notebook files (*.ipynb) to various other
formats.

WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.

Options
-------

Arguments that take values are actually convenience aliases to full
Configurables, whose aliases are listed on the help line. For more information
on full configurables, see '--help-all'.

-y
    Answer yes to any questions instead of prompting.
--execute
    Execute the notebook prior to export.
--debug
    set log level to logging.DEBUG (maximize logging output)
--generate-config
    generate default config file
--no-prompt
    Exclude input and output prompts from converted document.
--stdin
    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'
--inplace
    Run nbconvert in place, overwriting the existing notebook (only 
    relevant when converting to notebook format)
--stdout
    Write notebook output to stdout instead of files.
--allow-errors
    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.
--output=<Unicode> (NbConvertApp.output_base)
    Default: ''
    overwrite base name use for output files. can only be used when converting
    one notebook at a time.
--template=<Unicode> (TemplateExporter.template_file)
    Default: ''
    Name of the template file to use
--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)
    Default: ''
    The URL prefix for reveal.js. This can be a a relative URL for a local copy
    of reveal.js, or point to a CDN.
    For speaker notes to work, a local reveal.js prefix must be used.
--writer=<DottedObjectName> (NbConvertApp.writer_class)
    Default: 'FilesWriter'
    Writer class used to write the  results of the conversion
--to=<Unicode> (NbConvertApp.export_format)
    Default: 'html'
    The export format to be used, either one of the built-in formats, or a
    dotted object name that represents the import path for an `Exporter` class
--nbformat=<Enum> (NotebookExporter.nbformat_version)
    Default: 4
    Choices: [1, 2, 3, 4]
    The nbformat version to write. Use this to downgrade notebooks.
--post=<DottedOrNone> (NbConvertApp.postprocessor_class)
    Default: ''
    PostProcessor class used to write the results of the conversion
--output-dir=<Unicode> (FilesWriter.build_directory)
    Default: ''
    Directory to write output(s) to. Defaults to output to the directory of each
    notebook. To recover previous default behaviour (outputting to the current
    working directory) use . as the flag value.
--config=<Unicode> (JupyterApp.config_file)
    Default: ''
    Full path of a config file.
--log-level=<Enum> (Application.log_level)
    Default: 30
    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')
    Set the log level by value or name.

To see all available configurables, use `--help-all`

Examples
--------

    The simplest way to use nbconvert is
    
    > jupyter nbconvert mynotebook.ipynb
    
    which will convert mynotebook.ipynb to the default format (probably HTML).
    
    You can specify the export format with `--to`.
    Options include ['asciidoc', 'custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']
    
    > jupyter nbconvert --to latex mynotebook.ipynb
    
    Both HTML and LaTeX support multiple output templates. LaTeX includes
    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You
    can specify the flavor of the format used.
    
    > jupyter nbconvert --to html --template basic mynotebook.ipynb
    
    You can also pipe the output to stdout, rather than a file
    
    > jupyter nbconvert mynotebook.ipynb --stdout
    
    PDF is generated via latex
    
    > jupyter nbconvert mynotebook.ipynb --to pdf
    
    You can get (and serve) a Reveal.js-powered slideshow
    
    > jupyter nbconvert myslides.ipynb --to slides --post serve
    
    Multiple notebooks can be given at the command line in a couple of 
    different ways:
    
    > jupyter nbconvert notebook*.ipynb
    > jupyter nbconvert notebook1.ipynb notebook2.ipynb
    
    or you can specify the notebooks list in a config file, containing::
    
        c.NbConvertApp.notebooks = ["my_notebook.ipynb"]
    
    > jupyter nbconvert --config mycfg.py


--------------------- >> end captured logging << ---------------------