Console Output
Started by GitHub push by severinsimmler
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
> git --version # timeout=10
using GIT_ASKPASS to set credentials
> git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
> git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
> git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision f66b93bdb9e0a64c74fb5b70cc9a601f7647fe1c (refs/remotes/origin/testing)
> git config core.sparsecheckout # timeout=10
> git checkout -f f66b93bdb9e0a64c74fb5b70cc9a601f7647fe1c
Commit message: "Fix path to MALLET"
> git rev-list a1f8e92eb8464d18cfdb900c8a01f2f7c5cecd49 # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda3918145448332582565.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting nose (from -r requirements-dev.txt (line 2))
Using cached nose-1.3.7-py3-none-any.whl
Collecting nosexcover (from -r requirements-dev.txt (line 3))
Using cached nosexcover-1.0.11-py2.py3-none-any.whl
Collecting jupyter (from -r requirements-dev.txt (line 4))
Using cached jupyter-1.0.0-py2.py3-none-any.whl
Collecting sphinx (from -r requirements-dev.txt (line 5))
Using cached Sphinx-1.6.5-py2.py3-none-any.whl
Collecting nbsphinx (from -r requirements-dev.txt (line 6))
Downloading nbsphinx-0.2.16-py2.py3-none-any.whl
Collecting recommonmark (from -r requirements-dev.txt (line 7))
Using cached recommonmark-0.4.0-py2.py3-none-any.whl
Collecting pandas>=0.19.2 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached pandas-0.21.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting regex>=2017.01.14 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting gensim>=0.13.2 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting lda>=1.0.5 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl
Collecting numpy>=1.3 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl
Collecting lxml>=3.6.4 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached lxml-4.1.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting flask>=0.11.1 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached Flask-0.12.2-py2.py3-none-any.whl
Collecting matplotlib>=1.5.3 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached matplotlib-2.1.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting bokeh>=0.12.6 (from dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3))
Using cached coverage-4.4.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting notebook (from jupyter->-r requirements-dev.txt (line 4))
Using cached notebook-5.2.1-py2.py3-none-any.whl
Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4))
Using cached nbconvert-5.3.1-py2.py3-none-any.whl
Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4))
Using cached jupyter_console-5.2.0-py2.py3-none-any.whl
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Using cached qtconsole-4.3.1-py2.py3-none-any.whl
Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4))
Using cached ipywidgets-7.0.3-py2.py3-none-any.whl
Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4))
Using cached ipykernel-4.6.1-py3-none-any.whl
Collecting imagesize (from sphinx->-r requirements-dev.txt (line 5))
Using cached imagesize-0.7.1-py2.py3-none-any.whl
Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 5))
Using cached Pygments-2.2.0-py2.py3-none-any.whl
Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 5))
Using cached docutils-0.14-py3-none-any.whl
Collecting six>=1.5 (from sphinx->-r requirements-dev.txt (line 5))
Using cached six-1.11.0-py2.py3-none-any.whl
Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 5))
Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl
Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from sphinx->-r requirements-dev.txt (line 5))
Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 5))
Using cached requests-2.18.4-py2.py3-none-any.whl
Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 5))
Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl
Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 5))
Using cached Babel-2.5.1-py2.py3-none-any.whl
Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 5))
Using cached Jinja2-2.9.6-py2.py3-none-any.whl
Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 5))
Using cached alabaster-0.7.10-py2.py3-none-any.whl
Collecting nbformat (from nbsphinx->-r requirements-dev.txt (line 6))
Using cached nbformat-4.4.0-py2.py3-none-any.whl
Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 6))
Using cached traitlets-4.3.2-py2.py3-none-any.whl
Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 7))
Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached pytz-2017.3-py2.py3-none-any.whl
Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached python_dateutil-2.6.1-py2.py3-none-any.whl
Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached pbr-3.1.1-py2.py3-none-any.whl
Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached click-6.7-py2.py3-none-any.whl
Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached Werkzeug-0.12.2-py2.py3-none-any.whl
Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached pyparsing-2.2.0-py2.py3-none-any.whl
Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached cycler-0.10.0-py2.py3-none-any.whl
Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4))
Collecting jupyter-core (from notebook->jupyter->-r requirements-dev.txt (line 4))
Using cached jupyter_core-4.4.0-py2.py3-none-any.whl
Collecting jupyter-client (from notebook->jupyter->-r requirements-dev.txt (line 4))
Using cached jupyter_client-5.1.0-py2.py3-none-any.whl
Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4))
Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl
Collecting mistune>=0.7.4 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Downloading mistune-0.8.1-py2.py3-none-any.whl
Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Using cached entrypoints-0.2.3-py2.py3-none-any.whl
Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Using cached testpath-0.3.1-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4))
Using cached bleach-2.1.1-py2.py3-none-any.whl
Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached prompt_toolkit-1.0.15-py3-none-any.whl
Collecting ipython (from jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached ipython-6.2.1-py3-none-any.whl
Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4))
Using cached widgetsnbextension-3.0.6-py2.py3-none-any.whl
Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5))
Using cached certifi-2017.11.5-py2.py3-none-any.whl
Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5))
Using cached urllib3-1.22-py2.py3-none-any.whl
Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5))
Using cached chardet-3.0.4-py2.py3-none-any.whl
Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5))
Using cached idna-2.6-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 5))
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsphinx->-r requirements-dev.txt (line 6))
Using cached jsonschema-2.6.0-py2.py3-none-any.whl
Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 6))
Using cached decorator-4.1.2-py2.py3-none-any.whl
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.3.0.dev1->-r requirements.txt (line 1))
Using cached boto-2.48.0-py2.py3-none-any.whl
Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4))
Using cached ptyprocess-0.5.2-py2.py3-none-any.whl
Collecting pyzmq>=13 (from jupyter-client->notebook->jupyter->-r requirements-dev.txt (line 4))
Using cached pyzmq-16.0.3-cp35-cp35m-manylinux1_x86_64.whl
Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4))
Using cached html5lib-1.0b10-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached wcwidth-0.1.7-py2.py3-none-any.whl
Collecting jedi>=0.10 (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached jedi-0.11.0-py2.py3-none-any.whl
Collecting pickleshare (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached pickleshare-0.7.4-py2.py3-none-any.whl
Collecting simplegeneric>0.8 (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Collecting pexpect; sys_platform != "win32" (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached pexpect-4.2.1-py2.py3-none-any.whl
Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4))
Using cached webencodings-0.5.1-py2.py3-none-any.whl
Collecting parso==0.1.0 (from jedi>=0.10->ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4))
Using cached parso-0.1.0-py2.py3-none-any.whl
Installing collected packages: nose, coverage, nosexcover, ipython-genutils, decorator, six, traitlets, tornado, ptyprocess, terminado, jsonschema, jupyter-core, nbformat, mistune, entrypoints, testpath, MarkupSafe, Jinja2, pandocfilters, webencodings, html5lib, bleach, Pygments, nbconvert, python-dateutil, pyzmq, jupyter-client, parso, jedi, wcwidth, prompt-toolkit, pickleshare, simplegeneric, pexpect, ipython, ipykernel, notebook, jupyter-console, qtconsole, widgetsnbextension, ipywidgets, jupyter, imagesize, docutils, sphinxcontrib-websupport, certifi, urllib3, chardet, idna, requests, snowballstemmer, pytz, babel, alabaster, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, scipy, bz2file, boto, smart-open, gensim, pbr, lda, lxml, click, Werkzeug, itsdangerous, flask, pyparsing, cycler, matplotlib, PyYAML, bokeh, dariah-topics
Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.9.6 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.12.2 alabaster-0.7.10 babel-2.5.1 bleach-2.1.1 bokeh-0.12.10 boto-2.48.0 bz2file-0.98 certifi-2017.11.5 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.2 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 gensim-3.1.0 html5lib-1.0b10 idna-2.6 imagesize-0.7.1 ipykernel-4.6.1 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.3 itsdangerous-0.24 jedi-0.11.0 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.1.0 jupyter-console-5.2.0 jupyter-core-4.4.0 lda-1.0.5 lxml-4.1.1 matplotlib-2.1.0 mistune-0.8.1 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.16 nose-1.3.7 nosexcover-1.0.11 notebook-5.2.1 numpy-1.13.3 pandas-0.21.0 pandocfilters-1.4.2 parso-0.1.0 pbr-3.1.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.15 ptyprocess-0.5.2 pyparsing-2.2.0 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.3 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.9.23 requests-2.18.4 scipy-1.0.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.3 snowballstemmer-1.2.1 sphinx-1.6.5 sphinxcontrib-websupport-1.0.1 terminado-0.6 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.6
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing top-level names to dariah_topics.egg-info/top_level.txt
writing dariah_topics.egg-info/PKG-INFO
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing requirements to dariah_topics.egg-info/requires.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
warning: check: missing required meta-data: url
creating dariah_topics-0.3.0.dev1
creating dariah_topics-0.3.0.dev1/dariah_topics
creating dariah_topics-0.3.0.dev1/dariah_topics.egg-info
creating dariah_topics-0.3.0.dev1/test
copying files to dariah_topics-0.3.0.dev1...
copying README.md -> dariah_topics-0.3.0.dev1
copying setup.cfg -> dariah_topics-0.3.0.dev1
copying setup.py -> dariah_topics-0.3.0.dev1
copying dariah_topics/__init__.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/doclist.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/mallet.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/meta.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-0.3.0.dev1/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.3.0.dev1/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-0.3.0.dev1/test
Writing dariah_topics-0.3.0.dev1/setup.cfg
Creating tar archive
removing 'dariah_topics-0.3.0.dev1' (and everything under it)
running bdist_wheel
running build
running build_py
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.3.0.dev1-py3.5.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-0.3.0.dev1.dist-info/WHEEL
creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.3.0.dev1-py3-none-any.whl' and adding '.' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/doclist.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/mallet.py'
adding 'dariah_topics/meta.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-0.3.0.dev1.dist-info/DESCRIPTION.rst'
adding 'dariah_topics-0.3.0.dev1.dist-info/metadata.json'
adding 'dariah_topics-0.3.0.dev1.dist-info/top_level.txt'
adding 'dariah_topics-0.3.0.dev1.dist-info/WHEEL'
adding 'dariah_topics-0.3.0.dev1.dist-info/METADATA'
adding 'dariah_topics-0.3.0.dev1.dist-info/RECORD'
+ nosetests --cover-html
....../mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:736: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
....../mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/bokeh/util/deprecation.py:34: BokehDeprecationWarning: responsive parameter was deprecated in Bokeh 0.12.10 and will be removed, use sizing_mode='fixed' for responsive=False or sizing_mode='scale_width' for responsive=True instead.
warn(message)
......................
Name Stmts Miss Cover
-----------------------------------------------------
dariah_topics/__init__.py 7 0 100%
dariah_topics/doclist.py 93 14 85%
dariah_topics/meta.py 57 38 33%
dariah_topics/postprocessing.py 154 30 81%
dariah_topics/preprocessing.py 226 60 73%
dariah_topics/visualization.py 189 112 41%
-----------------------------------------------------
TOTAL 726 254 65%
----------------------------------------------------------------------
Ran 34 tests in 47.599s
OK
+ ./setup.py build_sphinx -a
running build_sphinx
Running Sphinx v1.6.5
loading pickled environment... done
[autosummary] generating autosummary for: CONTRIBUTING.md, IntroducingGensim.ipynb, IntroducingLda.ipynb, IntroducingMallet.ipynb, README.md, demonstrator/README.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst, presentation_topic_over_time.ipynb
'pattern' package not found; tag filters are not available for English
WARNING: WordCloud functions not available, they require the wordcloud module
building [mo]: all of 0 po files
building [html]: all source files
updating environment: 0 added, 3 changed, 0 removed
reading sources... [ 33%] IntroducingGensim
reading sources... [ 66%] IntroducingLda
reading sources... [100%] IntroducingMallet
/mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:1064: WARNING: Title level inconsistent:
Define path to corpus folder
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:1080: WARNING: Title level inconsistent:
Path to mallet folder
^^^^^^^^^^^^^^^^^^^^^
/mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:1101: WARNING: Title level inconsistent:
Output folder
^^^^^^^^^^^^^
/mnt/data/jenkins/workspace/DARIAH-Topics/IntroducingMallet.ipynb:1118: WARNING: Title level inconsistent:
The Mallet corpus model
^^^^^^^^^^^^^^^^^^^^^^^
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/presentation_topic_over_time.ipynb: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 6%] CONTRIBUTING
writing output... [ 12%] IntroducingGensim
writing output... [ 18%] IntroducingLda
writing output... [ 25%] IntroducingMallet
writing output... [ 31%] README
writing output... [ 37%] demonstrator/README
writing output... [ 43%] docs/gen/dariah_topics
writing output... [ 50%] docs/gen/dariah_topics.doclist
writing output... [ 56%] docs/gen/dariah_topics.evaluation
writing output... [ 62%] docs/gen/dariah_topics.mallet
writing output... [ 68%] docs/gen/dariah_topics.meta
writing output... [ 75%] docs/gen/dariah_topics.preprocessing
writing output... [ 81%] docs/gen/dariah_topics.visualization
writing output... [ 87%] docs/gen/modules
writing output... [ 93%] index
writing output... [100%] presentation_topic_over_time
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.full_path:: WARNING: 'any' reference target not found: Path
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.full_path:10: WARNING: 'any' reference target not found: Path()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.BaseDocList.get_docs:6: WARNING: 'any' reference target not found: _get_item(self, index)
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.full_path:: WARNING: 'any' reference target not found: Path
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.full_path:10: WARNING: 'any' reference target not found: Path()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/doclist.py:docstring of dariah_topics.doclist.PathDocList.with_segment_files:5: WARNING: 'any' reference target not found: strings.Formatter
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/evaluation.py:docstring of dariah_topics.evaluation.read_dictionary:4: WARNING: 'any' reference target not found: create_dictionary()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/evaluation.py:docstring of dariah_topics.evaluation.read_sparse_bow:4: WARNING: 'any' reference target not found: create_sparse_bow()
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_binary:: WARNING: 'any' reference target not found: stoplist
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_binary:: WARNING: 'any' reference target not found: replacements_files
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_binary:: WARNING: 'any' reference target not found: gram_sizes=1,2
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_model
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_state
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_model
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_state
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_topic_docs
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: output_doc_topics
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:docstring of dariah_topics.mallet.create_mallet_model:: WARNING: 'any' reference target not found: num_iterations = 0
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:3: WARNING: 'any' reference target not found: documents
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:7: WARNING: more than one target found for 'any' cross-reference 'segments': could be :py:meth: or :py:meth:
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.AbstractCorpus.flatten_segments:7: WARNING: 'any' reference target not found: segments=True
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:3: WARNING: 'any' reference target not found: documents
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:7: WARNING: more than one target found for 'any' cross-reference 'segments': could be :py:meth: or :py:meth:
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.TableCorpus.flatten_segments:7: WARNING: 'any' reference target not found: segments=True
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: (?<name>pattern)
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: _
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: author
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/meta.py:docstring of dariah_topics.meta.fn2metadata:: WARNING: 'any' reference target not found: title
generating indices... genindex py-modindex
highlighting module code... [ 16%] dariah_topics.mallet
highlighting module code... [ 33%] dariah_topics.doclist
highlighting module code... [ 50%] dariah_topics.meta
highlighting module code... [ 66%] dariah_topics.evaluation
highlighting module code... [ 83%] dariah_topics.visualization
highlighting module code... [100%] dariah_topics.preprocessing
writing additional pages... search
copying images... [ 12%] build/sphinx/doctrees/nbsphinx/IntroducingLda_58_1.png
copying images... [ 25%] demonstrator/screenshot.png
copying images... [ 37%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_16_2.png
copying images... [ 50%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_17_2.png
copying images... [ 62%] build/sphinx/doctrees/nbsphinx/IntroducingGensim_55_1.png
copying images... [ 75%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_18_2.png
copying images... [ 87%] build/sphinx/doctrees/nbsphinx/IntroducingMallet_61_1.png
copying images... [100%] build/sphinx/doctrees/nbsphinx/presentation_topic_over_time_20_0.png
copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 35 warnings.
[DocLinks] Copying Documentation to 1 ...
Recording test results
[Cobertura] Publishing Cobertura coverage report...
Publishing Cobertura coverage results...
Cobertura coverage report found.
[Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@4d1fac24[description=A Python library for Text Mining and Topic Modeling.,homepage=,name=Topics,license=<null>,fork=true,size=187436,milestones={},language=Jupyter Notebook,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Tue, 07 Nov 2017 14:32:54 GMT], ETag=[W/"57c9abd3fc2b2b1387557f173597277f"], Last-Modified=[Tue, 31 Oct 2017 22:57:58 GMT], OkHttp-Received-Millis=[1510065174797], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1510065174616], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[80F9:4809:F7DECB:1FA0BD3:5A01C416], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4984], X-RateLimit-Reset=[1510067886], X-Runtime-rack=[0.066824], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:f66b93b) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/f66b93bdb9e0a64c74fb5b70cc9a601f7647fe1c
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: 1.0
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: SUCCESS
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