Console Output
Started by GitHub push by thvitt
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from https://github.com/DARIAH-DE/Topics
> git --version # timeout=10
using GIT_ASKPASS to set credentials
> git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
> git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
> git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 1bd46524b0c465e7e945a75fabb568bc1c376f49 (refs/remotes/origin/testing)
> git config core.sparsecheckout # timeout=10
> git checkout -f 1bd46524b0c465e7e945a75fabb568bc1c376f49
Commit message: "Merge branch 'pytest' into testing"
> git rev-list 53c089135870513e32a57caa5a4c8787ff215026 # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda547043776668242008.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting pytest (from -r requirements-dev.txt (line 4))
Using cached pytest-3.3.1-py2.py3-none-any.whl
Collecting pytest-cov (from -r requirements-dev.txt (line 5))
Downloading pytest_cov-2.5.1-py2.py3-none-any.whl
Collecting pytest-nbsmoke (from -r requirements-dev.txt (line 6))
Downloading pytest_nbsmoke-0.1.5-py2.py3-none-any.whl
Collecting jupyter (from -r requirements-dev.txt (line 9))
Using cached jupyter-1.0.0-py2.py3-none-any.whl
Collecting sphinx (from -r requirements-dev.txt (line 10))
Using cached Sphinx-1.6.5-py2.py3-none-any.whl
Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 11))
Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-build-hmj0zmbg/nbsphinx
Collecting recommonmark (from -r requirements-dev.txt (line 12))
Using cached recommonmark-0.4.0-py2.py3-none-any.whl
Collecting pyinstaller (from -r requirements-dev.txt (line 15))
Downloading PyInstaller-3.3.1.tar.gz (3.5MB)
Collecting pandas>=0.19.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached pandas-0.21.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting regex>=2017.01.14 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting gensim>=0.13.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached gensim-3.2.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting lda>=1.0.5 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl
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Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl
Collecting lxml>=3.6.4 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached lxml-4.1.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting flask>=0.11.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached Flask-0.12.2-py2.py3-none-any.whl
Collecting matplotlib>=1.5.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached matplotlib-2.1.1-cp35-cp35m-manylinux1_x86_64.whl
Collecting bokeh>=0.12.6 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting wordcloud>=1.3.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting attrs>=17.2.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached attrs-17.3.0-py2.py3-none-any.whl
Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached py-1.5.2-py2.py3-none-any.whl
Collecting pluggy<0.7,>=0.5 (from pytest->-r requirements-dev.txt (line 4))
Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->-r requirements-dev.txt (line 4))
Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4))
Using cached six-1.11.0-py2.py3-none-any.whl
Collecting coverage>=3.7.1 (from pytest-cov->-r requirements-dev.txt (line 5))
Using cached coverage-4.4.2-cp35-cp35m-manylinux1_x86_64.whl
Collecting jupyter-client (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached jupyter_client-5.2.0-py2.py3-none-any.whl
Collecting pyflakes (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
Downloading pyflakes-1.6.0-py2.py3-none-any.whl (227kB)
Collecting nbconvert (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached nbconvert-5.3.1-py2.py3-none-any.whl
Collecting ipykernel (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached ipykernel-4.7.0-py3-none-any.whl
Collecting nbformat (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached nbformat-4.4.0-py2.py3-none-any.whl
Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 9))
Using cached ipywidgets-7.0.5-py2.py3-none-any.whl
Collecting notebook (from jupyter->-r requirements-dev.txt (line 9))
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Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 9))
Using cached jupyter_console-5.2.0-py2.py3-none-any.whl
Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 10))
Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl
Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 10))
Using cached Babel-2.5.1-py2.py3-none-any.whl
Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 10))
Using cached alabaster-0.7.10-py2.py3-none-any.whl
Collecting imagesize (from sphinx->-r requirements-dev.txt (line 10))
Using cached imagesize-0.7.1-py2.py3-none-any.whl
Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 10))
Using cached docutils-0.14-py3-none-any.whl
Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 10))
Using cached Pygments-2.2.0-py2.py3-none-any.whl
Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 10))
Using cached requests-2.18.4-py2.py3-none-any.whl
Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 10))
Using cached Jinja2-2.10-py2.py3-none-any.whl
Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 10))
Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl
Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 11))
Using cached traitlets-4.3.2-py2.py3-none-any.whl
Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 12))
Collecting pefile>=2017.8.1 (from pyinstaller->-r requirements-dev.txt (line 15))
Downloading pefile-2017.11.5.tar.gz (61kB)
Collecting macholib>=1.8 (from pyinstaller->-r requirements-dev.txt (line 15))
Downloading macholib-1.9-py2.py3-none-any.whl (40kB)
Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached python_dateutil-2.6.1-py2.py3-none-any.whl
Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached pytz-2017.3-py2.py3-none-any.whl
Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached pbr-3.1.1-py2.py3-none-any.whl
Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached Werkzeug-0.13-py2.py3-none-any.whl
Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached click-6.7-py2.py3-none-any.whl
Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached cycler-0.10.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached pyparsing-2.2.0-py2.py3-none-any.whl
Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting pillow (from wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached Pillow-4.3.0-cp35-cp35m-manylinux1_x86_64.whl
Collecting pyzmq>=13 (from jupyter-client->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached pyzmq-16.0.3-cp35-cp35m-manylinux1_x86_64.whl
Collecting jupyter-core (from jupyter-client->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached jupyter_core-4.4.0-py2.py3-none-any.whl
Collecting bleach (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached bleach-2.1.2-py2.py3-none-any.whl
Collecting testpath (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached testpath-0.3.1-py2.py3-none-any.whl
Collecting mistune>=0.7.4 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached mistune-0.8.3-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Collecting entrypoints>=0.2.2 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached entrypoints-0.2.3-py2.py3-none-any.whl
Collecting ipython>=4.0.0 (from ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached ipython-6.2.1-py3-none-any.whl
Collecting ipython-genutils (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached jsonschema-2.6.0-py2.py3-none-any.whl
Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9))
Using cached widgetsnbextension-3.0.8-py2.py3-none-any.whl
Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 9))
Using cached terminado-0.8.1-py2.py3-none-any.whl
Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9))
Using cached prompt_toolkit-1.0.15-py3-none-any.whl
Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
Using cached certifi-2017.11.5-py2.py3-none-any.whl
Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
Using cached idna-2.6-py2.py3-none-any.whl
Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
Using cached chardet-3.0.4-py2.py3-none-any.whl
Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
Using cached urllib3-1.22-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10))
Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 11))
Using cached decorator-4.1.2-py2.py3-none-any.whl
Collecting future (from pefile>=2017.8.1->pyinstaller->-r requirements-dev.txt (line 15))
Collecting altgraph>=0.15 (from macholib>=1.8->pyinstaller->-r requirements-dev.txt (line 15))
Downloading altgraph-0.15-py2.py3-none-any.whl
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached boto-2.48.0-py2.py3-none-any.whl
Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Downloading boto3-1.5.3-py2.py3-none-any.whl (128kB)
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting olefile (from pillow->wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached html5lib-1.0.1-py2.py3-none-any.whl
Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached pexpect-4.3.1-py2.py3-none-any.whl
Collecting pickleshare (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached pickleshare-0.7.4-py2.py3-none-any.whl
Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached jedi-0.11.1-py2.py3-none-any.whl
Collecting ptyprocess; os_name != "nt" (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 9))
Using cached ptyprocess-0.5.2-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9))
Using cached wcwidth-0.1.7-py2.py3-none-any.whl
Collecting botocore<1.9.0,>=1.8.17 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Downloading botocore-1.8.17-py2.py3-none-any.whl (4.0MB)
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached s3transfer-0.1.12-py2.py3-none-any.whl
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1))
Using cached jmespath-0.9.3-py2.py3-none-any.whl
Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached webencodings-0.5.1-py2.py3-none-any.whl
Collecting parso==0.1.1 (from jedi>=0.10->ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
Using cached parso-0.1.1-py2.py3-none-any.whl
Building wheels for collected packages: pyinstaller, pefile
Running setup.py bdist_wheel for pyinstaller: started
Running setup.py bdist_wheel for pyinstaller: finished with status 'done'
Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/2f/f8/8e/d8ee9b359f487a8488380f0b522d81fa5ee01956161d41b72e
Running setup.py bdist_wheel for pefile: started
Running setup.py bdist_wheel for pefile: finished with status 'done'
Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/30/34/1d/5f4e14feee63c615a1ae25c211b21237a6a74c1c4fb6639842
Successfully built pyinstaller pefile
Installing collected packages: attrs, py, pluggy, six, pytest, coverage, pytest-cov, pyzmq, python-dateutil, ipython-genutils, decorator, traitlets, jupyter-core, jupyter-client, pyflakes, MarkupSafe, Jinja2, webencodings, html5lib, bleach, Pygments, testpath, mistune, jsonschema, nbformat, pandocfilters, entrypoints, nbconvert, tornado, simplegeneric, ptyprocess, pexpect, pickleshare, parso, jedi, wcwidth, prompt-toolkit, ipython, ipykernel, pytest-nbsmoke, terminado, notebook, widgetsnbextension, ipywidgets, qtconsole, jupyter-console, jupyter, sphinxcontrib-websupport, pytz, babel, alabaster, imagesize, docutils, certifi, idna, chardet, urllib3, requests, snowballstemmer, sphinx, nbsphinx, commonmark, recommonmark, future, pefile, altgraph, macholib, pyinstaller, numpy, pandas, regex, scipy, boto, jmespath, botocore, s3transfer, boto3, bz2file, smart-open, gensim, pbr, lda, lxml, Werkzeug, click, itsdangerous, flask, cycler, pyparsing, matplotlib, PyYAML, bokeh, olefile, pillow, wordcloud, dariah-topics
Running setup.py install for nbsphinx: started
Running setup.py install for nbsphinx: finished with status 'done'
Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.13 alabaster-0.7.10 altgraph-0.15 attrs-17.3.0 babel-2.5.1 bleach-2.1.2 bokeh-0.12.13 boto-2.48.0 boto3-1.5.3 botocore-1.8.17 bz2file-0.98 certifi-2017.11.5 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.2 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 future-0.16.0 gensim-3.2.0 html5lib-1.0.1 idna-2.6 imagesize-0.7.1 ipykernel-4.7.0 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.5 itsdangerous-0.24 jedi-0.11.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.0 jupyter-console-5.2.0 jupyter-core-4.4.0 lda-1.0.5 lxml-4.1.1 macholib-1.9 matplotlib-2.1.1 mistune-0.8.3 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.18 notebook-5.2.2 numpy-1.13.3 olefile-0.44 pandas-0.21.1 pandocfilters-1.4.2 parso-0.1.1 pbr-3.1.1 pefile-2017.11.5 pexpect-4.3.1 pickleshare-0.7.4 pillow-4.3.0 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.2 pyflakes-1.6.0 pyinstaller-3.3.1 pyparsing-2.2.0 pytest-3.3.1 pytest-cov-2.5.1 pytest-nbsmoke-0.1.5 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.3 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.12.12 requests-2.18.4 s3transfer-0.1.12 scipy-1.0.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.5 snowballstemmer-1.2.1 sphinx-1.6.5 sphinxcontrib-websupport-1.0.1 terminado-0.8.1 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.8 wordcloud-1.3.1
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing top-level names to dariah_topics.egg-info/top_level.txt
writing dariah_topics.egg-info/PKG-INFO
writing requirements to dariah_topics.egg-info/requires.txt
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
warning: check: missing required meta-data: url
creating dariah_topics-0.4.0.dev1
creating dariah_topics-0.4.0.dev1/dariah_topics
creating dariah_topics-0.4.0.dev1/dariah_topics.egg-info
creating dariah_topics-0.4.0.dev1/test
copying files to dariah_topics-0.4.0.dev1...
copying README.md -> dariah_topics-0.4.0.dev1
copying setup.cfg -> dariah_topics-0.4.0.dev1
copying setup.py -> dariah_topics-0.4.0.dev1
copying dariah_topics/__init__.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/doc_meta_list.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/doclist.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/mallet.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/meta.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-0.4.0.dev1/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-0.4.0.dev1/test
Writing dariah_topics-0.4.0.dev1/setup.cfg
Creating tar archive
removing 'dariah_topics-0.4.0.dev1' (and everything under it)
running bdist_wheel
running build
running build_py
copying dariah_topics/postprocessing.py -> build/lib/dariah_topics
copying dariah_topics/visualization.py -> build/lib/dariah_topics
copying dariah_topics/mallet.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/doc_meta_list.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1-py3.5.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1.dist-info/WHEEL
creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.4.0.dev1-py3-none-any.whl' and adding '.' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/doc_meta_list.py'
adding 'dariah_topics/doclist.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/mallet.py'
adding 'dariah_topics/meta.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-0.4.0.dev1.dist-info/DESCRIPTION.rst'
adding 'dariah_topics-0.4.0.dev1.dist-info/metadata.json'
adding 'dariah_topics-0.4.0.dev1.dist-info/top_level.txt'
adding 'dariah_topics-0.4.0.dev1.dist-info/WHEEL'
adding 'dariah_topics-0.4.0.dev1.dist-info/METADATA'
adding 'dariah_topics-0.4.0.dev1.dist-info/RECORD'
+ pytest --nbsmoke-run
============================= test session starts ==============================
platform linux -- Python 3.5.3, pytest-3.3.1, py-1.5.2, pluggy-0.6.0
rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg
plugins: nbsmoke-0.1.5, cov-2.5.1
collected 61 items
IntroducingGensim.ipynb . [ 1%]
IntroducingLda.ipynb . [ 3%]
IntroducingMallet.ipynb . [ 4%]
Visualizations.ipynb . [ 6%]
dariah_topics/mallet.py .FF... [ 16%]
dariah_topics/postprocessing.py ........... [ 34%]
dariah_topics/preprocessing.py ........................... [ 78%]
dariah_topics/visualization.py .. [ 81%]
test/demonstrator_test.py .. [ 85%]
test/test_fuzzy_segmenting.py ......... [100%]
--- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ----
----------- coverage: platform linux, python 3.5.3-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml
=================================== FAILURES ===================================
________ [doctest] dariah_topics.mallet.Mallet.import_tokenized_corpus _________
275 False.
276
277 Returns:
278 The absolute path to the created MALLET corpus file.
279
280 Example:
281 >>> tokenized_corpus = [['this', 'is', 'a', 'tokenized', 'document']]
282 >>> document_labels = ['document_label']
283 >>> Mallet = Mallet(corpus_output='.')
284 >>> mallet_corpus = Mallet.import_tokenized_corpus(tokenized_corpus, document_labels)
UNEXPECTED EXCEPTION: OSError('MALLET did not produce any output files. Maybe check your args?',)
Traceback (most recent call last):
File "/usr/lib/python3.5/doctest.py", line 1321, in __run
compileflags, 1), test.globs)
File "<doctest dariah_topics.mallet.Mallet.import_tokenized_corpus[3]>", line 1, in <module>
File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 296, in import_tokenized_corpus
_check_mallet_output(os.path.join(self.corpus_output, 'corpus.mallet'))
File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 157, in _check_mallet_output
raise OSError("MALLET did not produce any output files. Maybe check your args?")
OSError: MALLET did not produce any output files. Maybe check your args?
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:284: UnexpectedException
----------------------------- Captured stderr call -----------------------------
INFO dariah_topics.postprocessing: Saving tokenized corpus to . ...
DEBUG dariah_topics.postprocessing: Current file: document_label
INFO dariah_topics.mallet: Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ...
------------------------------ Captured log call -------------------------------
postprocessing.py 212 INFO Saving tokenized corpus to . ...
postprocessing.py 218 DEBUG Current file: document_label
mallet.py 94 INFO Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ...
______________ [doctest] dariah_topics.mallet.Mallet.train_topics ______________
373 beta (float): Smoothing parameter for each topic-word. Defaults to 0.01.
374
375 Returns:
376 None.
377
378 Example:
379 >>> tokenized_corpus = [['this', 'is', 'a', 'tokenized', 'document']]
380 >>> document_labels = ['document_label']
381 >>> Mallet = Mallet(corpus_output='.')
382 >>> mallet_corpus = Mallet.import_tokenized_corpus(tokenized_corpus, document_labels)
UNEXPECTED EXCEPTION: OSError('MALLET did not produce any output files. Maybe check your args?',)
Traceback (most recent call last):
File "/usr/lib/python3.5/doctest.py", line 1321, in __run
compileflags, 1), test.globs)
File "<doctest dariah_topics.mallet.Mallet.train_topics[3]>", line 1, in <module>
File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 296, in import_tokenized_corpus
_check_mallet_output(os.path.join(self.corpus_output, 'corpus.mallet'))
File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 157, in _check_mallet_output
raise OSError("MALLET did not produce any output files. Maybe check your args?")
OSError: MALLET did not produce any output files. Maybe check your args?
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:382: UnexpectedException
----------------------------- Captured stderr call -----------------------------
INFO dariah_topics.postprocessing: Saving tokenized corpus to . ...
DEBUG dariah_topics.postprocessing: Current file: document_label
INFO dariah_topics.mallet: Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ...
------------------------------ Captured log call -------------------------------
postprocessing.py 212 INFO Saving tokenized corpus to . ...
postprocessing.py 218 DEBUG Current file: document_label
mallet.py 94 INFO Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ...
=============================== warnings summary ===============================
dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing._create_large_corpus_model
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing._hapax_legomena_large_corpus_model
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing._remove_features_from_large_corpus_model
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing._stopwords_large_corpus_model
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing.create_document_term_matrix
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_hapax_legomena
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_stopwords
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
dariah_topics/preprocessing.py::dariah_topics.preprocessing.remove_features
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))
-- Docs: http://doc.pytest.org/en/latest/warnings.html
============== 2 failed, 59 passed, 10 warnings in 126.54 seconds ==============
Build step 'Virtualenv Builder' marked build as failure
Recording test results
[Cobertura] Publishing Cobertura coverage report...
[Cobertura] Publishing Cobertura coverage results...
[Cobertura] Cobertura coverage report found.
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@134a1b05[description=A Python library for Topic Modeling.,homepage=,name=Topics,license=<null>,fork=true,size=37992,milestones={},language=Jupyter Notebook,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 20 Dec 2017 19:10:09 GMT], ETag=[W/"64f570c4381b168d45843cb46b914e7a"], Last-Modified=[Mon, 18 Dec 2017 12:03:31 GMT], OkHttp-Received-Millis=[1513797009148], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1513797008826], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[8262:4A53:5181BB:CA0ADF:5A3AB590], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4913], X-RateLimit-Reset=[1513798202], X-Runtime-rack=[0.067212], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:1bd4652) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/1bd46524b0c465e7e945a75fabb568bc1c376f49
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: -10.0
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: FAILURE
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