Console Output

Started by GitHub push by severinsimmler
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
Cloning the remote Git repository
Cloning repository git://github.com/DARIAH-DE/Topics
 > /usr/bin/git init /mnt/data/jenkins/workspace/DARIAH-Topics # timeout=10
Fetching upstream changes from git://github.com/DARIAH-DE/Topics
 > /usr/bin/git --version # timeout=10
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10
 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from git://github.com/DARIAH-DE/Topics
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision 3befcde6d614b1964c620547de59117785c522ed (refs/remotes/origin/testing)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 3befcde6d614b1964c620547de59117785c522ed
Commit message: "Fix path to corpus"
First time build. Skipping changelog.
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda5935061004468943754.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages (10.0.1)
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting pytest (from -r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/62/59/950a805f90587d6e2f3692cf43700becb7cdf6c16b06d84e7516b199236b/pytest-3.6.0-py2.py3-none-any.whl (194kB)
Collecting pytest-cov (from -r requirements-dev.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/30/7d/7f6a78ae44a1248ee28cc777586c18b28a1df903470e5d34a6e25712b8aa/pytest_cov-2.5.1-py2.py3-none-any.whl
Collecting pytest-nbsmoke (from -r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/ea/fc/59a5a78686afdec342c783399e21aec0c721998be2a04b5e9ff49fe43a29/pytest_nbsmoke-0.1.6-py2.py3-none-any.whl
Collecting jupyter (from -r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/83/df/0f5dd132200728a86190397e1ea87cd76244e42d39ec5e88efd25b2abd7e/jupyter-1.0.0-py2.py3-none-any.whl
Collecting sphinx (from -r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/1b/9f/98d67201c5a6e1aececed03a44a819d0e32adba81414081e303cfaf8c54c/Sphinx-1.7.5-py2.py3-none-any.whl (1.9MB)
Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 11))
  Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-install-qz7h5i9d/nbsphinx
Collecting recommonmark (from -r requirements-dev.txt (line 12))
  Downloading https://files.pythonhosted.org/packages/df/a5/8ee4b84af7f997dfdba71254a88008cfc19c49df98983c9a4919e798f8ce/recommonmark-0.4.0-py2.py3-none-any.whl
Collecting pandas>=0.19.2 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/69/ec/8ff0800b8594691759b78a42ccd616f81e7099ee47b167eb9bbd502c02b9/pandas-0.23.0-cp36-cp36m-manylinux1_x86_64.whl (11.7MB)
Collecting regex>=2017.01.14 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/a2/51/c39562cfed3272592c60cfd229e5464d715b78537e332eac2b695422dc49/regex-2018.02.21.tar.gz (620kB)
Collecting gensim>=0.13.2 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/33/33/df6cb7acdcec5677ed130f4800f67509d24dbec74a03c329fcbf6b0864f0/gensim-3.4.0-cp36-cp36m-manylinux1_x86_64.whl (22.6MB)
Collecting lda>=1.0.5 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/17/ea/794c335c3909ef8c0d8f015ec9023e9847cf0b5216bf4e443a5a06f9ba0d/lda-1.0.5-cp36-cp36m-manylinux1_x86_64.whl (510kB)
Collecting numpy>=1.3 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/71/90/ca61e203e0080a8cef7ac21eca199829fa8d997f7c4da3e985b49d0a107d/numpy-1.14.3-cp36-cp36m-manylinux1_x86_64.whl (12.2MB)
Collecting lxml>=3.6.4 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/a7/b9/ccf46cea0f698b40bca2a9c1a44039c336fe1988b82de4f7353be7a8396a/lxml-4.2.1-cp36-cp36m-manylinux1_x86_64.whl (5.6MB)
Collecting matplotlib>=1.5.3 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/49/b8/89dbd27f2fb171ce753bb56220d4d4f6dbc5fe32b95d8edc4415782ef07f/matplotlib-2.2.2-cp36-cp36m-manylinux1_x86_64.whl (12.6MB)
Collecting bokeh>=0.12.6 (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/cd/47/201408029628164342e65a4552ee00abc79ea7be1b64031281b81b0e2f4d/bokeh-0.12.16.tar.gz (14.7MB)
Collecting metadata_toolbox (from dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/20/f6/30218493f87bcd084cc9a259ca2be65ca21a32efb4cc505a953374fcef54/metadata_toolbox-0.1.0.dev0.tar.gz
Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl
Collecting pluggy<0.7,>=0.5 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/ba/65/ded3bc40bbf8d887f262f150fbe1ae6637765b5c9534bd55690ed2c0b0f7/pluggy-0.6.0-py3-none-any.whl
Collecting attrs>=17.4.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/41/59/cedf87e91ed541be7957c501a92102f9cc6363c623a7666d69d51c78ac5b/attrs-18.1.0-py2.py3-none-any.whl
Collecting atomicwrites>=1.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/0a/e8/cd6375e7a59664eeea9e1c77a766eeac0fc3083bb958c2b41ec46b95f29c/atomicwrites-1.1.5-py2.py3-none-any.whl
Collecting more-itertools>=4.0.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/85/40/90c3b0393e12b9827381004224de8814686e3d7182f9d4182477f600826d/more_itertools-4.2.0-py3-none-any.whl (45kB)
Requirement not upgraded as not directly required: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages (from pytest->-r requirements-dev.txt (line 4)) (39.2.0)
Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/67/a5/f77982214dd4c8fd104b066f249adea2c49e25e8703d284382eb5e9ab35a/py-1.5.3-py2.py3-none-any.whl (84kB)
Collecting coverage>=3.7.1 (from pytest-cov->-r requirements-dev.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/3d/a0/b12090c40e0b8196b973962ec71c1c541a6c04af58ba5ad85683b3de251a/coverage-4.5.1-cp36-cp36m-manylinux1_x86_64.whl (202kB)
Collecting nbformat (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/da/27/9a654d2b6cc1eaa517d1c5a4405166c7f6d72f04f6e7eea41855fe808a46/nbformat-4.4.0-py2.py3-none-any.whl (155kB)
Collecting nbconvert (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/39/ea/280d6c0d92f8e3ca15fd798bbcc2ea141489f9539de7133d8fe10ea4b049/nbconvert-5.3.1-py2.py3-none-any.whl (387kB)
Collecting pyflakes (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/44/98/af7a72c9a543b1487d92813c648cb9b9adfbc96faef5455d60f4439aa99b/pyflakes-2.0.0-py2.py3-none-any.whl (53kB)
Collecting ipykernel (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/ab/3f/cd624c835aa3336a9110d0a99e15070f343b881b7d651ab1375ef226a3ac/ipykernel-4.8.2-py3-none-any.whl (108kB)
Collecting jupyter-client (from pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/94/dd/fe6c4d683b09eb05342bd2816b7779663f71762b4fa9c2d5203d35d17354/jupyter_client-5.2.3-py2.py3-none-any.whl (89kB)
Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/90/ff/047e0dca2627b162866920e7aa93f04523c0ae81e5c67060eec85701992d/qtconsole-4.3.1-py2.py3-none-any.whl (108kB)
Collecting notebook (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/c0/66/cfed59f574d03ca5f1b7c5281485a9cc9a0f21342d24e0f057572316dae5/notebook-5.5.0-py2.py3-none-any.whl (8.4MB)
Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/77/82/6469cd7fccf7958cbe5dce2e623f1e3c5e27f1bb1ad36d90519bc2d5d370/jupyter_console-5.2.0-py2.py3-none-any.whl
Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/7d/24/fabc09ad81c6071159a4d12d5bfbddcbea69bd9e3b16c3250ef300c0285f/ipywidgets-7.2.1-py2.py3-none-any.whl (106kB)
Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/d4/6c/8a935e2c7b54a37714656d753e4187ee0631988184ed50c0cf6476858566/snowballstemmer-1.2.1-py2.py3-none-any.whl (64kB)
Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/2e/c3/9b7dcd8548cf2c00531763ba154e524af575e8f36701bacfe5bcadc67440/alabaster-0.7.10-py2.py3-none-any.whl
Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB)
Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/02/ee/b6e02dc6529e82b75bb06823ff7d005b141037cb1416b10c6f00fc419dca/Pygments-2.2.0-py2.py3-none-any.whl (841kB)
Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/b8/ad/c6f60602d3ee3d92fbed87675b6fb6a6f9a38c223343ababdb44ba201f10/Babel-2.6.0-py2.py3-none-any.whl (8.1MB)
Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/56/0f/3ee19ca5e5a1d9751cf4bbeb372d40a46421c4321fe55a4703ba66d0bafb/sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl
Collecting imagesize (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/e9/79/31cc1c2e0daf575f8fd2b581e2975e6a6938bd439581f766b79c50479521/imagesize-1.0.0-py2.py3-none-any.whl
Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl (126kB)
Collecting packaging (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/ad/c2/b500ea05d5f9f361a562f089fc91f77ed3b4783e13a08a3daf82069b1224/packaging-17.1-py2.py3-none-any.whl
Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/36/fa/08e9e6e0e3cbd1d362c3bbee8d01d0aedb2155c4ac112b19ef3cae8eed8d/docutils-0.14-py3-none-any.whl (543kB)
Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 11))
  Downloading https://files.pythonhosted.org/packages/93/d6/abcb22de61d78e2fc3959c964628a5771e47e7cc60d53e9342e21ed6cc9a/traitlets-4.3.2-py2.py3-none-any.whl (74kB)
Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 12))
  Downloading https://files.pythonhosted.org/packages/4d/93/3808cbcebe94d205f55a9a32857df733a603339d32c46cd32669d808d964/CommonMark-0.5.4.tar.gz (120kB)
Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/dc/83/15f7833b70d3e067ca91467ca245bae0f6fe56ddc7451aa0dc5606b120f2/pytz-2018.4-py2.py3-none-any.whl (510kB)
Collecting python-dateutil>=2.5.0 (from pandas>=0.19.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/cf/f5/af2b09c957ace60dcfac112b669c45c8c97e32f94aa8b56da4c6d1682825/python_dateutil-2.7.3-py2.py3-none-any.whl (211kB)
Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/4b/69/c92661a333f733510628f28b8282698b62cdead37291c8491f3271677c02/smart_open-1.5.7.tar.gz
Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/a8/0b/f163da98d3a01b3e0ef1cab8dd2123c34aee2bafbb1c5bffa354cc8a1730/scipy-1.1.0-cp36-cp36m-manylinux1_x86_64.whl (31.2MB)
Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/2d/9d/7bfab757977067556c7ca5fe437f28e8b8843c95564fca504de79df63b25/pbr-4.0.3-py2.py3-none-any.whl (98kB)
Collecting kiwisolver>=1.0.1 (from matplotlib>=1.5.3->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/69/a7/88719d132b18300b4369fbffa741841cfd36d1e637e1990f27929945b538/kiwisolver-1.0.1-cp36-cp36m-manylinux1_x86_64.whl (949kB)
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/6a/8a/718fd7d3458f9fab8e67186b00abdd345b639976bc7fb3ae722e1b026a50/pyparsing-2.2.0-py2.py3-none-any.whl (56kB)
Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB)
Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/cf/d1/3be271ae5eba9fb59df63c9891fdc7d8044b999e8ac145994cdbfd2ae66a/tornado-5.0.2.tar.gz (506kB)
Collecting parse>=1.8.2 (from metadata_toolbox->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/79/e1/522401e2cb06d09497f2f56baa3b902116c97dec6f448d02b730e63b44a8/parse-1.8.4.tar.gz
Collecting ipython-genutils (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/fa/bc/9bd3b5c2b4774d5f33b2d544f1460be9df7df2fe42f352135381c347c69a/ipython_genutils-0.2.0-py2.py3-none-any.whl
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl
Collecting jupyter-core (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/1d/44/065d2d7bae7bebc06f1dd70d23c36da8c50c0f08b4236716743d706762a8/jupyter_core-4.4.0-py2.py3-none-any.whl (126kB)
Collecting bleach (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/30/b6/a8cffbb9ab4b62b557c22703163735210e9cd857d533740c64e1467d228e/bleach-2.1.3-py2.py3-none-any.whl
Collecting entrypoints>=0.2.2 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/cc/8b/4eefa9b47f1910b3d2081da67726b066e379b04ca897acfe9f92bac56147/entrypoints-0.2.3-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/4c/ea/236e2584af67bb6df960832731a6e5325fd4441de001767da328c33368ce/pandocfilters-1.4.2.tar.gz
Collecting mistune>=0.7.4 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/c8/8c/87f4d359438ba0321a2ae91936030110bfcc62fef752656321a72b8c1af9/mistune-0.8.3-py2.py3-none-any.whl
Collecting testpath (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/15/19/d7bc380c479a184e4a5a9ce516e4e2a773165f89b445f7cdced83d94de25/testpath-0.3.1-py2.py3-none-any.whl (161kB)
Collecting ipython>=4.0.0 (from ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/b1/7f/91d50f28af3e3a24342561983a7857e399ce24093876e6970b986a0b6677/ipython-6.4.0-py3-none-any.whl (750kB)
Collecting pyzmq>=13 (from jupyter-client->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/58/0e/d40ee65acabb0776ccdade96812adc0438051ef6cff1ddbe4da463604867/pyzmq-17.0.0-cp36-cp36m-manylinux1_x86_64.whl (3.1MB)
Collecting Send2Trash (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/49/46/c3dc27481d1cc57b9385aff41c474ceb7714f7935b1247194adae45db714/Send2Trash-1.5.0-py3-none-any.whl
Collecting terminado>=0.8.1 (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/2e/20/a26211a24425923d46e1213b376a6ee60dc30bcdf1b0c345e2c3769deb1c/terminado-0.8.1-py2.py3-none-any.whl
Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/04/d1/c6616dd03701e7e2073f06d5c3b41b012256e42b72561f16a7bd86dd7b43/prompt_toolkit-1.0.15-py3-none-any.whl (247kB)
Collecting widgetsnbextension~=3.2.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/ff/fa/64acc09fc845a6b2dc0724d6f3f81e829b778ed5e9a7559567b4f19a3f4b/widgetsnbextension-3.2.1-py2.py3-none-any.whl (2.2MB)
Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB)
Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
  Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl
Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB)
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/4d/de/32d741db316d8fdb7680822dd37001ef7a448255de9699ab4bfcbdf4172b/MarkupSafe-1.0.tar.gz
Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 11))
  Downloading https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/bd/b7/a88a67002b1185ed9a8e8a6ef15266728c2361fcb4f1d02ea331e4c7741d/boto-2.48.0-py2.py3-none-any.whl (1.4MB)
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/61/39/122222b5e85cd41c391b68a99ee296584b2a2d1d233e7ee32b4532384f2d/bz2file-0.98.tar.gz
Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/61/e3/79e80d130ee3dfbb576bd0adb1544ea27d14bfb7bdbaac415c73abc92385/boto3-1.7.29-py2.py3-none-any.whl (128kB)
Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/a5/62/bbd2be0e7943ec8504b517e62bab011b4946e1258842bc159e5dfde15b96/html5lib-1.0.1-py2.py3-none-any.whl (117kB)
Collecting backcall (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/84/71/c8ca4f5bb1e08401b916c68003acf0a0655df935d74d93bf3f3364b310e0/backcall-0.1.0.tar.gz
Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/e7/42/074192a165622e645ed4aeade63e76e56b3496a044569b3c6cae3a918352/jedi-0.12.0-py2.py3-none-any.whl (172kB)
Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/3d/57/4d9c9e3ae9a255cd4e1106bb57e24056d3d0709fc01b2e3e345898e49d5b/simplegeneric-0.8.1.zip
Collecting pickleshare (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/9f/17/daa142fc9be6b76f26f24eeeb9a138940671490b91cb5587393f297c8317/pickleshare-0.7.4-py2.py3-none-any.whl
Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/89/e6/b5a1de8b0cc4e07ca1b305a4fcc3f9806025c1b651ea302646341222f88b/pexpect-4.6.0-py2.py3-none-any.whl (57kB)
Collecting ptyprocess; os_name != "nt" (from terminado>=0.8.1->notebook->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/ff/4e/fa4a73ccfefe2b37d7b6898329e7dbcd1ac846ba3a3b26b294a78a3eb997/ptyprocess-0.5.2-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl
Collecting botocore<1.11.0,>=1.10.29 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/2c/f7/b2bd70e45a6efb008c9995d895ab00ef54cf2af35a84fc16625e020455b1/botocore-1.10.29-py2.py3-none-any.whl (4.3MB)
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/b7/31/05c8d001f7f87f0f07289a5fc0fc3832e9a57f2dbd4d3b0fee70e0d51365/jmespath-0.9.3-py2.py3-none-any.whl
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.0.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/d7/14/2a0004d487464d120c9fb85313a75cd3d71a7506955be458eebfe19a6b1d/s3transfer-0.1.13-py2.py3-none-any.whl (59kB)
Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl
Collecting parso>=0.2.0 (from jedi>=0.10->ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/cd/3e/5908f9577dbd1e5df53e64349bfd11e46b726c1e4d8cd676bbe8aa4de316/parso-0.2.1-py2.py3-none-any.whl (91kB)
Building wheels for collected packages: nbsphinx, regex, bokeh, metadata-toolbox, commonmark, smart-open, PyYAML, tornado, parse, pandocfilters, MarkupSafe, bz2file, backcall, simplegeneric
  Running setup.py bdist_wheel for nbsphinx: started
  Running setup.py bdist_wheel for nbsphinx: finished with status 'done'
  Stored in directory: /tmp/pip-ephem-wheel-cache-gpx4beaw/wheels/a3/7b/ff/b71160a2e088926eb13abcf8e0cde94c0aa8400c67d3df57f5
  Running setup.py bdist_wheel for regex: started
  Running setup.py bdist_wheel for regex: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/6b/c9/cf/230425cdd343d6b98e8da5a5841c3dab1e0c8aaa134e29edb0
  Running setup.py bdist_wheel for bokeh: started
  Running setup.py bdist_wheel for bokeh: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/ff/28/51/22e8d08e9d5383ee1de981aaa8ff7bc53c7d65022e5101400f
  Running setup.py bdist_wheel for metadata-toolbox: started
  Running setup.py bdist_wheel for metadata-toolbox: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/b5/2f/fb/bab1240c4d6756f31265919deefed0908b81fc62246bf93dbb
  Running setup.py bdist_wheel for commonmark: started
  Running setup.py bdist_wheel for commonmark: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/a0/f4/35/019d917f6875107ade3aad634c982f5c6b604c5631cddf20ac
  Running setup.py bdist_wheel for smart-open: started
  Running setup.py bdist_wheel for smart-open: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/b1/9e/7d/bb3d3b55c597e72617140a0638c06382a5f17283881eae163e
  Running setup.py bdist_wheel for PyYAML: started
  Running setup.py bdist_wheel for PyYAML: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/03/05/65/bdc14f2c6e09e82ae3e0f13d021e1b6b2481437ea2f207df3f
  Running setup.py bdist_wheel for tornado: started
  Running setup.py bdist_wheel for tornado: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/29/8c/cf/6a5a8f6e35d877c0cb72b109d21c34981504897ce9a605e599
  Running setup.py bdist_wheel for parse: started
  Running setup.py bdist_wheel for parse: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/d9/25/e7/8f6f6a0e923b019d09148f5ea711333b94fab03f585e990eee
  Running setup.py bdist_wheel for pandocfilters: started
  Running setup.py bdist_wheel for pandocfilters: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/39/01/56/f1b08a6275acc59e846fa4c1e1b65dbc1919f20157d9e66c20
  Running setup.py bdist_wheel for MarkupSafe: started
  Running setup.py bdist_wheel for MarkupSafe: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/33/56/20/ebe49a5c612fffe1c5a632146b16596f9e64676768661e4e46
  Running setup.py bdist_wheel for bz2file: started
  Running setup.py bdist_wheel for bz2file: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/81/75/d6/e1317bf09bf1af5a30befc2a007869fa6e1f516b8f7c591cb9
  Running setup.py bdist_wheel for backcall: started
  Running setup.py bdist_wheel for backcall: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/98/b0/dd/29e28ff615af3dda4c67cab719dd51357597eabff926976b45
  Running setup.py bdist_wheel for simplegeneric: started
  Running setup.py bdist_wheel for simplegeneric: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/a9/28/53/f24776b4c5bcbe91aaf1f1e247bd6fadd17191aa12fac63902
Successfully built nbsphinx regex bokeh metadata-toolbox commonmark smart-open PyYAML tornado parse pandocfilters MarkupSafe bz2file backcall simplegeneric
Installing collected packages: six, pluggy, attrs, atomicwrites, more-itertools, py, pytest, coverage, pytest-cov, ipython-genutils, jsonschema, decorator, traitlets, jupyter-core, nbformat, webencodings, html5lib, bleach, Pygments, entrypoints, pandocfilters, mistune, MarkupSafe, Jinja2, testpath, nbconvert, pyflakes, wcwidth, prompt-toolkit, backcall, parso, jedi, simplegeneric, pickleshare, ptyprocess, pexpect, ipython, tornado, pyzmq, python-dateutil, jupyter-client, ipykernel, pytest-nbsmoke, qtconsole, Send2Trash, terminado, notebook, jupyter-console, widgetsnbextension, ipywidgets, jupyter, snowballstemmer, alabaster, urllib3, chardet, certifi, idna, requests, pytz, babel, sphinxcontrib-websupport, imagesize, pyparsing, packaging, docutils, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, boto, bz2file, jmespath, botocore, s3transfer, boto3, smart-open, scipy, gensim, pbr, lda, lxml, kiwisolver, cycler, matplotlib, PyYAML, bokeh, parse, metadata-toolbox, dariah-topics
  Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Send2Trash-1.5.0 alabaster-0.7.10 atomicwrites-1.1.5 attrs-18.1.0 babel-2.6.0 backcall-0.1.0 bleach-2.1.3 bokeh-0.12.16 boto-2.48.0 boto3-1.7.29 botocore-1.10.29 bz2file-0.98 certifi-2018.4.16 chardet-3.0.4 commonmark-0.5.4 coverage-4.5.1 cycler-0.10.0 dariah-topics decorator-4.3.0 docutils-0.14 entrypoints-0.2.3 gensim-3.4.0 html5lib-1.0.1 idna-2.6 imagesize-1.0.0 ipykernel-4.8.2 ipython-6.4.0 ipython-genutils-0.2.0 ipywidgets-7.2.1 jedi-0.12.0 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.3 jupyter-console-5.2.0 jupyter-core-4.4.0 kiwisolver-1.0.1 lda-1.0.5 lxml-4.2.1 matplotlib-2.2.2 metadata-toolbox-0.1.0.dev0 mistune-0.8.3 more-itertools-4.2.0 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.3.3 notebook-5.5.0 numpy-1.14.3 packaging-17.1 pandas-0.23.0 pandocfilters-1.4.2 parse-1.8.4 parso-0.2.1 pbr-4.0.3 pexpect-4.6.0 pickleshare-0.7.4 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.3 pyflakes-2.0.0 pyparsing-2.2.0 pytest-3.6.0 pytest-cov-2.5.1 pytest-nbsmoke-0.1.6 python-dateutil-2.7.3 pytz-2018.4 pyzmq-17.0.0 qtconsole-4.3.1 recommonmark-0.4.0 regex-2018.2.21 requests-2.18.4 s3transfer-0.1.13 scipy-1.1.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.7 snowballstemmer-1.2.1 sphinx-1.7.5 sphinxcontrib-websupport-1.0.1 terminado-0.8.1 testpath-0.3.1 tornado-5.0.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.2.1
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing dariah_topics.egg-info/PKG-INFO
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing requirements to dariah_topics.egg-info/requires.txt
writing top-level names to dariah_topics.egg-info/top_level.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
creating dariah_topics-1.0.0.dev0
creating dariah_topics-1.0.0.dev0/dariah_topics
creating dariah_topics-1.0.0.dev0/dariah_topics.egg-info
creating dariah_topics-1.0.0.dev0/test
copying files to dariah_topics-1.0.0.dev0...
copying README.md -> dariah_topics-1.0.0.dev0
copying setup.cfg -> dariah_topics-1.0.0.dev0
copying setup.py -> dariah_topics-1.0.0.dev0
copying dariah_topics/__init__.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/modeling.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/utils.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-1.0.0.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-1.0.0.dev0/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-1.0.0.dev0/test
Writing dariah_topics-1.0.0.dev0/setup.cfg
creating dist
Creating tar archive
removing 'dariah_topics-1.0.0.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/dariah_topics
copying dariah_topics/postprocessing.py -> build/lib/dariah_topics
copying dariah_topics/preprocessing.py -> build/lib/dariah_topics
copying dariah_topics/visualization.py -> build/lib/dariah_topics
copying dariah_topics/utils.py -> build/lib/dariah_topics
copying dariah_topics/__init__.py -> build/lib/dariah_topics
copying dariah_topics/modeling.py -> build/lib/dariah_topics
copying dariah_topics/evaluation.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/utils.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/modeling.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-1.0.0.dev0-py3.6.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/dariah_topics-1.0.0.dev0.dist-info/WHEEL
creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-1.0.0.dev0-py3-none-any.whl' and adding '.' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/modeling.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/utils.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-1.0.0.dev0.dist-info/top_level.txt'
adding 'dariah_topics-1.0.0.dev0.dist-info/WHEEL'
adding 'dariah_topics-1.0.0.dev0.dist-info/METADATA'
adding 'dariah_topics-1.0.0.dev0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.0.dev' to '1.0.0.dev0'
  normalized_version,
+ pytest --nbsmoke-run
============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.6.0, py-1.5.3, pluggy-0.6.0
rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg
plugins: nbsmoke-0.1.6, cov-2.5.1
collected 57 items

dariah_topics/postprocessing.py ...........                              [ 19%]
dariah_topics/preprocessing.py ...........................               [ 66%]
dariah_topics/utils.py ......                                            [ 77%]
notebooks/IntroducingGensim.ipynb .                                      [ 78%]
notebooks/IntroducingLda.ipynb .                                         [ 80%]
notebooks/IntroducingMallet.ipynb .                                      [ 82%]
notebooks/Visualizations.ipynb .                                         [ 84%]
test/test_fuzzy_segmenting.py .........                                  [100%]

--- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ----

----------- coverage: platform linux, python 3.6.5-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml

=============================== warnings summary ===============================
dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_document_topics
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
    """

dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_topics
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
    """

dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._create_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._hapax_legomena_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._remove_features_from_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing._stopwords_large_corpus_model
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.create_document_term_matrix
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_hapax_legomena
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_stopwords
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

dariah_topics/preprocessing.py::dariah_topics.preprocessing.remove_features
  /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
    document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

-- Docs: http://doc.pytest.org/en/latest/warnings.html
=================== 57 passed, 12 warnings in 80.66 seconds ====================
+ ./setup.py build_sphinx -a
running build_sphinx
creating /mnt/data/jenkins/workspace/DARIAH-Topics/build/sphinx
creating /mnt/data/jenkins/workspace/DARIAH-Topics/build/sphinx/doctrees
creating /mnt/data/jenkins/workspace/DARIAH-Topics/build/sphinx/html
Running Sphinx v1.7.5
loading pickled environment... not yet created
[autosummary] generating autosummary for: README.md, docs/CONTRIBUTING.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst, notebooks/IntroducingGensim.ipynb, notebooks/IntroducingLda.ipynb, notebooks/IntroducingMallet.ipynb, notebooks/Visualizations.ipynb
Failed to import 'dariah_topics.mallet': no module named dariah_topics.mallet
Failed to import 'dariah_topics.doclist': no module named dariah_topics.doclist
Failed to import 'dariah_topics.meta': no module named dariah_topics.meta
loading intersphinx inventory from http://docs.python.org/3/objects.inv...
intersphinx inventory has moved: http://docs.python.org/3/objects.inv -> https://docs.python.org/3/objects.inv
loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv...
loading intersphinx inventory from https://matplotlib.org/objects.inv...
loading intersphinx inventory from https://radimrehurek.com/gensim/objects.inv...
building [mo]: all of 0 po files
building [html]: all source files
updating environment: 15 added, 0 changed, 0 removed
reading sources... [  6%] README
reading sources... [ 13%] docs/CONTRIBUTING
reading sources... [ 20%] docs/gen/dariah_topics
reading sources... [ 26%] docs/gen/dariah_topics.doclist
reading sources... [ 33%] docs/gen/dariah_topics.evaluation
reading sources... [ 40%] docs/gen/dariah_topics.mallet
reading sources... [ 46%] docs/gen/dariah_topics.meta
reading sources... [ 53%] docs/gen/dariah_topics.preprocessing
reading sources... [ 60%] docs/gen/dariah_topics.visualization
reading sources... [ 66%] docs/gen/modules
reading sources... [ 73%] index
reading sources... [ 80%] notebooks/IntroducingGensim
reading sources... [ 86%] notebooks/IntroducingLda
reading sources... [ 93%] notebooks/IntroducingMallet
reading sources... [100%] notebooks/Visualizations

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.0.dev' to '1.0.0.dev0'
  normalized_version,
WARNING: autodoc: failed to import module 'dariah_topics.doclist'; the following exception was raised:
No module named 'dariah_topics.doclist'
WARNING: autodoc: failed to import module 'dariah_topics.mallet'; the following exception was raised:
No module named 'dariah_topics.mallet'
WARNING: autodoc: failed to import module 'dariah_topics.meta'; the following exception was raised:
No module named 'dariah_topics.meta'
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_from_pathlist:12: WARNING: Inline literal start-string without end-string.
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_model:3: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:9: WARNING: Unknown interpreted text role "clas".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:10: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:11: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:12: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:13: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:14: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:15: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:16: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingLda'
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingGensim'
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingMallet'
/mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'demonstrator/README'
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:868: WARNING: Title level inconsistent:

Path to MALLET folder
^^^^^^^^^^^^^^^^^^^^^
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/Visualizations.ipynb: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [  6%] README
writing output... [ 13%] docs/CONTRIBUTING
writing output... [ 20%] docs/gen/dariah_topics
writing output... [ 26%] docs/gen/dariah_topics.doclist
writing output... [ 33%] docs/gen/dariah_topics.evaluation
writing output... [ 40%] docs/gen/dariah_topics.mallet
writing output... [ 46%] docs/gen/dariah_topics.meta
writing output... [ 53%] docs/gen/dariah_topics.preprocessing
writing output... [ 60%] docs/gen/dariah_topics.visualization
writing output... [ 66%] docs/gen/modules
writing output... [ 73%] index
writing output... [ 80%] notebooks/IntroducingGensim
writing output... [ 86%] notebooks/IntroducingLda
writing output... [ 93%] notebooks/IntroducingMallet
writing output... [100%] notebooks/Visualizations

<unknown>:14: WARNING: unknown document: /notebooks/introducinglda
<unknown>:15: WARNING: unknown document: /notebooks/introducingmallet
<unknown>:16: WARNING: unknown document: /notebooks/introducinggensim
/mnt/data/jenkins/workspace/DARIAH-Topics/docs/CONTRIBUTING.md: WARNING: Could not lex literal_block as "json". Highlighting skipped.
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:53: WARNING: unknown document: /notebooks/introducingmallet
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:56: WARNING: unknown document: /notebooks/introducinglda
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:52: WARNING: unknown document: /notebooks/introducingmallet
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:55: WARNING: unknown document: /notebooks/introducinggensim
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:52: WARNING: unknown document: /notebooks/introducinggensim
/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:55: WARNING: unknown document: /notebooks/introducinglda
generating indices... genindex py-modindex
highlighting module code... [ 33%] dariah_topics.evaluation
highlighting module code... [ 66%] dariah_topics.preprocessing
highlighting module code... [100%] dariah_topics.visualization

writing additional pages... search
copying images... [ 12%] docs/images/dariah-de_logo.png
copying images... [ 25%] docs/images/bmbf_logo.png
copying images... [ 37%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingGensim_53_0.png
copying images... [ 50%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingLda_58_0.png
copying images... [ 62%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingMallet_62_0.png
copying images... [ 75%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_20_0.png
copying images... [ 87%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_22_0.png
copying images... [100%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_24_0.png

copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 35 warnings.

The HTML pages are in build/sphinx/html.
[DocLinks] Copying Documentation to 1 ...
Recording test results
[Cobertura] Publishing Cobertura coverage report...

[Cobertura] Publishing Cobertura coverage results...

[Cobertura] Cobertura coverage report found.

[Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@6019d168[description=A Python library for topic modeling.,homepage=https://dariah-de.github.io/Topics,name=Topics,fork=true,size=42253,milestones={},language=Python,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 30 May 2018 23:34:22 GMT], ETag=[W/"5392e0b6dee65ffee5778ac544f062ab"], Last-Modified=[Tue, 22 May 2018 20:11:01 GMT], OkHttp-Received-Millis=[1527723262532], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1527723262342], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[E7DE:1616:45E92B6:8B36E2B:5B0F34FE], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1527726862], X-Runtime-rack=[0.084410], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:3befcde) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/3befcde6d614b1964c620547de59117785c522ed
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: 1.0
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: SUCCESS