![[Jenkins]](/ci/static/d70d5ff4/images/svgs/logo.svg){kind=logo}
Started by an SCM change Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/cophi_toolbox Cloning the remote Git repository Cloning repository git://github.com/cophi-wue/cophi-toolbox > /usr/bin/git init /mnt/data/jenkins/workspace/cophi_toolbox # timeout=10 Fetching upstream changes from git://github.com/cophi-wue/cophi-toolbox > /usr/bin/git --version # timeout=10 using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/cophi-wue/cophi-toolbox +refs/heads/*:refs/remotes/origin/* > /usr/bin/git config remote.origin.url git://github.com/cophi-wue/cophi-toolbox # timeout=10 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > /usr/bin/git config remote.origin.url git://github.com/cophi-wue/cophi-toolbox # timeout=10 Fetching upstream changes from git://github.com/cophi-wue/cophi-toolbox using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/cophi-wue/cophi-toolbox +refs/heads/*:refs/remotes/origin/* Seen branch in repository origin/ddw Seen branch in repository origin/gh-pages Seen branch in repository origin/master Seen branch in repository origin/oop Seen branch in repository origin/testing Seen 5 remote branches > /usr/bin/git show-ref --tags -d # timeout=10 Checking out Revision ece0e45cea5086e582f026a5508c28eeab92b9b4 (origin/master) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f ece0e45cea5086e582f026a5508c28eeab92b9b4 Commit message: "release: v1.3.2" > /usr/bin/git rev-list --no-walk ece0e45cea5086e582f026a5508c28eeab92b9b4 # timeout=10 [cophi_toolbox] $ /bin/sh -xe /tmp/jenkins6118868697964855642.sh + tox GLOB sdist-make: /mnt/data/jenkins/workspace/cophi_toolbox/setup.py py34 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py34 SKIPPED: InterpreterNotFound: python3.4 py35 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py35 py35 installdeps: pytest, pytest-cov py35 inst: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.2.zip py35 installed: atomicwrites==1.3.0,attrs==19.1.0,cophi==1.3.2,coverage==4.5.3,importlib-metadata==0.15,lxml==4.3.3,more-itertools==7.0.0,numpy==1.16.4,pandas==0.24.2,pathlib2==2.3.3,pluggy==0.12.0,py==1.8.0,pytest==4.5.0,pytest-cov==2.7.1,python-dateutil==2.8.0,pytz==2019.1,regex==2019.5.25,six==1.12.0,wcwidth==0.1.7,zipp==0.5.1 py35 run-test-pre: PYTHONHASHSEED='1007774974' py35 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.5.6, pytest-4.5.0, py-1.8.0, pluggy-0.12.0 cachedir: .tox/py35/.pytest_cache rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.7.1 collected 91 items tests/test_api.py ... [ 3%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 84%] ......... [ 94%] tests/test_utils.py ..... [100%] --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.5.6-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ========================== 91 passed in 1.18 seconds =========================== py36 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py36 py36 installdeps: pytest, pytest-cov py36 inst: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.2.zip py36 installed: atomicwrites==1.3.0,attrs==19.1.0,cophi==1.3.2,coverage==4.5.3,importlib-metadata==0.15,lxml==4.3.3,more-itertools==7.0.0,numpy==1.16.4,pandas==0.24.2,pluggy==0.12.0,py==1.8.0,pytest==4.5.0,pytest-cov==2.7.1,python-dateutil==2.8.0,pytz==2019.1,regex==2019.5.25,six==1.12.0,wcwidth==0.1.7,zipp==0.5.1 py36 run-test-pre: PYTHONHASHSEED='1007774974' py36 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.6.8, pytest-4.5.0, py-1.8.0, pluggy-0.12.0 cachedir: .tox/py36/.pytest_cache rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.7.1 collected 91 items tests/test_api.py ... [ 3%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 84%] ......... [ 94%] tests/test_utils.py ..... [100%] =============================== warnings summary =============================== src/cophi/__init__.py:45 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/__init__.py:45: DeprecationWarning: invalid escape sequence \p """ src/cophi/text/model.py:489 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/model.py:489: DeprecationWarning: invalid escape sequence \m """ src/cophi/text/complexity.py:47 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:47: DeprecationWarning: invalid escape sequence \s """ src/cophi/text/complexity.py:61 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:61: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:75 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:75: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:89 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:89: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:104 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:104: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:119 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:119: DeprecationWarning: invalid escape sequence \; """ src/cophi/text/complexity.py:148 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:148: DeprecationWarning: invalid escape sequence \s """ src/cophi/text/complexity.py:162 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:162: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:206 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:206: DeprecationWarning: invalid escape sequence \c """ src/cophi/text/complexity.py:236 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:236: DeprecationWarning: invalid escape sequence \s """ -- Docs: https://docs.pytest.org/en/latest/warnings.html --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- ----------- coverage: platform linux, python 3.6.8-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ==================== 91 passed, 12 warnings in 1.14 seconds ==================== py37 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py37 py37 installdeps: pytest, pytest-cov py37 inst: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.2.zip py37 installed: atomicwrites==1.3.0,attrs==19.1.0,cophi==1.3.2,coverage==4.5.3,importlib-metadata==0.15,lxml==4.3.3,more-itertools==7.0.0,numpy==1.16.4,pandas==0.24.2,pluggy==0.12.0,py==1.8.0,pytest==4.5.0,pytest-cov==2.7.1,python-dateutil==2.8.0,pytz==2019.1,regex==2019.5.25,six==1.12.0,wcwidth==0.1.7,zipp==0.5.1 py37 run-test-pre: PYTHONHASHSEED='1007774974' py37 runtests: commands[0] | pytest ============================= test session starts ============================== platform linux -- Python 3.7.3rc1, pytest-4.5.0, py-1.8.0, pluggy-0.12.0 cachedir: .tox/py37/.pytest_cache rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg plugins: cov-2.7.1 collected 91 items tests/test_api.py ... [ 3%] tests/test_complexity.py ...................... [ 27%] tests/test_model.py .................................................... [ 84%] ......... [ 94%] tests/test_utils.py ..... [100%] =============================== warnings summary =============================== src/cophi/__init__.py:45 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/__init__.py:45: DeprecationWarning: invalid escape sequence \p """ src/cophi/text/model.py:489 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/model.py:489: DeprecationWarning: invalid escape sequence \m """ src/cophi/text/complexity.py:47 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:47: DeprecationWarning: invalid escape sequence \s """ src/cophi/text/complexity.py:61 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:61: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:75 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:75: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:89 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:89: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:104 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:104: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:119 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:119: DeprecationWarning: invalid escape sequence \; """ src/cophi/text/complexity.py:148 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:148: DeprecationWarning: invalid escape sequence \s """ src/cophi/text/complexity.py:162 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:162: DeprecationWarning: invalid escape sequence \l """ src/cophi/text/complexity.py:206 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:206: DeprecationWarning: invalid escape sequence \c """ src/cophi/text/complexity.py:236 /mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/complexity.py:236: DeprecationWarning: invalid escape sequence \s """ -- Docs: https://docs.pytest.org/en/latest/warnings.html --- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ---- --------- coverage: platform linux, python 3.7.3-candidate-1 --------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml ==================== 91 passed, 12 warnings in 1.09 seconds ==================== docs create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/docs docs installdeps: -r/mnt/data/jenkins/workspace/cophi_toolbox/docs/requirements.txt docs inst: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.2.zip docs installed: alabaster==0.7.12,Babel==2.7.0,certifi==2019.3.9,chardet==3.0.4,cophi==1.3.2,docutils==0.14,idna==2.8,imagesize==1.1.0,Jinja2==2.10.1,lxml==4.3.3,MarkupSafe==1.1.1,numpy==1.16.4,packaging==19.0,pandas==0.24.2,Pygments==2.4.2,pyparsing==2.4.0,python-dateutil==2.8.0,pytz==2019.1,regex==2019.5.25,requests==2.22.0,six==1.12.0,snowballstemmer==1.2.1,Sphinx==2.0.1,sphinxcontrib-applehelp==1.0.1,sphinxcontrib-devhelp==1.0.1,sphinxcontrib-htmlhelp==1.0.2,sphinxcontrib-jsmath==1.0.1,sphinxcontrib-qthelp==1.0.2,sphinxcontrib-serializinghtml==1.1.3,urllib3==1.25.3 docs run-test-pre: PYTHONHASHSEED='1007774974' docs runtests: commands[0] | sphinx-build -E -b html docs dist/docs Running Sphinx v2.0.1 making output directory... done loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 3 source files that are out of date updating environment: 3 added, 0 changed, 0 removed reading sources... [ 33%] index reading sources... [ 66%] reference/cophi-toolbox reading sources... [100%] reference/index /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/cophi_toolbox/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in dist/docs. docs runtests: commands[1] | sphinx-build -b linkcheck docs dist/docs Running Sphinx v2.0.1 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [linkcheck]: targets for 3 source files that are out of date updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] reference/cophi-toolbox /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup". .. testsetup:: from cophi import * WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised: No module named 'cophi_toolbox' looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 33%] index writing output... [ 66%] reference/cophi-toolbox writing output... [100%] reference/index build succeeded, 4 warnings. Look for any errors in the above output or in dist/docs/output.txt ___________________________________ summary ____________________________________ SKIPPED: py34: InterpreterNotFound: python3.4 py35: commands succeeded py36: commands succeeded py37: commands succeeded docs: commands succeeded congratulations :) [TASKS] Scanning folder '/mnt/data/jenkins/workspace/cophi_toolbox' for files matching the pattern '*, src/**/*, tests/**/*, docs/**/*' - excludes: .*/**/* [TASKS] Found 90 files to scan for tasks [TASKS] Found 3 open tasks. <Git Blamer> Using GitBlamer to create author and commit information for all warnings. <Git Blamer> GIT_COMMIT=ece0e45cea5086e582f026a5508c28eeab92b9b4, workspace=/mnt/data/jenkins/workspace/cophi_toolbox > /usr/bin/git rev-parse ece0e45cea5086e582f026a5508c28eeab92b9b4^{commit} # timeout=10 [TASKS] Computing warning deltas based on reference build #118 [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@ccdd172[description=A repository containing general functions for processing and accessing text corpora,homepage=<null>,name=cophi-toolbox,license=<null>,fork=false,size=612,milestones={},language=Jupyter Notebook,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 29 May 2019 03:56:45 GMT], ETag=[W/"7e365c592a8b7770516856b77db7d217"], Last-Modified=[Thu, 25 Apr 2019 20:39:02 GMT], OkHttp-Received-Millis=[1559102205893], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1559102205661], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[8038:0D0E:1AA27C:363B8A:5CEE02FD], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4991], X-RateLimit-Reset=[1559105685], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/cophi-wue/cophi-toolbox,id=113045733]] (sha:ece0e45) with context:cophi_toolbox Setting commit status on GitHub for https://github.com/cophi-wue/cophi-toolbox/commit/ece0e45cea5086e582f026a5508c28eeab92b9b4 Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: SUCCESS