Started by user Thorsten Vitt
Running as SYSTEM
Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/pydelta-next
The recommended git tool is: NONE
using credential Github
> /usr/bin/git rev-parse --resolve-git-dir /mnt/data/jenkins/workspace/pydelta-next/.git # timeout=10
Fetching changes from the remote Git repository
> /usr/bin/git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10
Fetching upstream changes from https://github.com/cophi-wue/pydelta
> /usr/bin/git --version # timeout=10
> git --version # 'git version 2.11.0'
using GIT_ASKPASS to set credentials
> /usr/bin/git fetch --tags --progress -- https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* # timeout=10
> /usr/bin/git rev-parse refs/remotes/origin/next^{commit} # timeout=10
Checking out Revision 35b061403021005713515a9040488e76886b3b48 (refs/remotes/origin/next)
> /usr/bin/git config core.sparsecheckout # timeout=10
> /usr/bin/git checkout -f 35b061403021005713515a9040488e76886b3b48 # timeout=10
Commit message: "fix(corpus): register corpus attributes."
> /usr/bin/git rev-list --no-walk 35b061403021005713515a9040488e76886b3b48 # timeout=10
No emails were triggered.
$ bash -c "[ -d \$HOME/.pyenv ]"
$ bash -c "cd /mnt/data/jenkins/workspace/pydelta-next && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=miniconda3-latest \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true"
$ bash -c "mkdir \$HOME/.pyenv.lock"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=miniconda3-latest \$HOME/.pyenv/bin/pyenv versions --bare"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=miniconda3-latest \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=miniconda3-latest \$HOME/.pyenv/bin/pyenv exec pip list"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=miniconda3-latest \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "rm -rf \$HOME/.pyenv.lock"
[pydelta-next] $ /bin/sh -xe /tmp/jenkins5263174890658104780.sh
+ poetry install
Installing dependencies from lock file
No dependencies to install or update
Installing the current project: delta (2.2.0.dev0)
+ poetry run pytest --doctest-modules --junit-xml pytest.xml --cov-report=html --cov-report=xml
============================= test session starts ==============================
platform linux -- Python 3.9.1, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
rootdir: /mnt/data/jenkins/workspace/pydelta-next, configfile: pyproject.toml
plugins: cov-2.12.1, notebook-0.6.1, anyio-3.2.1
collected 35 items
delta/graphics.py . [ 2%]
delta/util.py .... [ 14%]
test/corpus_test.py ................. [ 62%]
test/deltas_test.py ......... [ 88%]
test/test_issue6.py .... [100%]
--- generated xml file: /mnt/data/jenkins/workspace/pydelta-next/pytest.xml ----
============================= 35 passed in 43.33s ==============================
+ poetry run sh -c cd docs && make clean html
rm -rf _build/*
sphinx-build -b html -d _build/doctrees . _build/html
Running Sphinx v4.0.2
making output directory... done
WARNING: html_static_path entry '_static' does not exist
loading intersphinx inventory from http://docs.python.org/objects.inv...
loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv...
intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
intersphinx inventory has moved: http://pandas.pydata.org/pandas-docs/stable/objects.inv -> https://pandas.pydata.org/pandas-docs/stable/objects.inv
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
reading sources... [ 11%] CustomizingPipeline
reading sources... [ 22%] GettingStarted
reading sources... [ 33%] README
reading sources... [ 44%] README-branch
reading sources... [ 55%] concept
reading sources... [ 66%] delta
reading sources... [ 77%] index
reading sources... [ 88%] modules
reading sources... [100%] refactoring-notes
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:37: WARNING: File not found: 'delta.html#delta.corpus.Corpus'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:320: WARNING: File not found: 'delta.html#corpus.Corpus.relative_frequencies'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:320: WARNING: File not found: 'delta.html#corpus.Corpus.get_mfw_table'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:353: WARNING: File not found: 'delta.html#deltas.DistanceMatrix'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:645: WARNING: File not found: 'delta.html#graph.Dendrogram'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:645: WARNING: File not found: 'delta.html#corpus.DocumentDescriber'
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: WARNING: Unknown interpreted text role "function".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.metadata:3: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:11: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:13: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.FeatureGenerator.metadata:3: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:11: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:13: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module".
/mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:13: WARNING: Unknown target name: "facet".
/mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:18: WARNING: Unknown target name: "facet".
/mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:23: WARNING: Unknown target name: "facet".
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 11%] CustomizingPipeline
writing output... [ 22%] GettingStarted
writing output... [ 33%] README
writing output... [ 44%] README-branch
writing output... [ 55%] concept
writing output... [ 66%] delta
writing output... [ 77%] index
writing output... [ 88%] modules
writing output... [100%] refactoring-notes
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:624: WARNING: undefined label: /delta.rst#cluster.clustering
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:794: WARNING: undefined label: /delta.rst#cluster.flatclustering
/mnt/data/jenkins/workspace/pydelta-next/docs/README.rst:54: WARNING: 'any' reference target not found: pytest
/mnt/data/jenkins/workspace/pydelta-next/docs/README.rst:54: WARNING: 'any' reference target not found: cd docs && make html
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: more than one target found for 'any' cross-reference 'sort': could be :py:attr:`delta.corpus.FeatureGenerator.sort` or :py:attr:`delta.FeatureGenerator.sort`
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:34: WARNING: more than one target found for 'any' cross-reference 'top_n': could be :py:meth:`delta.corpus.Corpus.top_n` or :py:meth:`delta.Corpus.top_n`
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:35: WARNING: more than one target found for 'any' cross-reference 'cull': could be :py:meth:`delta.corpus.Corpus.cull` or :py:meth:`delta.Corpus.cull`
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:50: WARNING: more than one target found for 'any' cross-reference 'normalization': could be :py:func:`delta.deltas.normalization` or :py:func:`delta.normalization`
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator:1: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.SimpleFeatureGenerator.postprocess_tokens:4: WARNING: more than one target found for 'any' cross-reference 'lower_case': could be :py:attr:`delta.corpus.FeatureGenerator.lower_case` or :py:attr:`delta.FeatureGenerator.lower_case`
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.SimpleFeatureGenerator.postprocess_tokens:4: WARNING: more than one target found for 'any' cross-reference 'ngrams': could be :py:attr:`delta.corpus.FeatureGenerator.ngrams` or :py:func:`delta.util.ngrams` or :py:attr:`delta.FeatureGenerator.ngrams`
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.SimpleFeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:29: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:29: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:11: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:6: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:16: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:: WARNING: more than one target found for cross-reference 'Corpus': delta.corpus.Corpus, delta.Corpus
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.create_result:: WARNING: more than one target found for cross-reference 'Corpus': delta.corpus.Corpus, delta.Corpus
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.PreprocessingDeltaFunction:7: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DistanceMatrix.compare_with:5: WARNING: more than one target found for 'any' cross-reference 'compare_pairwise': could be :py:func:`delta.util.compare_pairwise` or :py:func:`delta.compare_pairwise`
/mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:: WARNING: more than one target found for cross-reference 'Clustering': delta.cluster.Clustering, delta.Clustering
/mnt/data/jenkins/workspace/pydelta-next/delta/util.py:docstring of delta.util.compare_pairwise:3: WARNING: 'any' reference target not found: :func:ssd.squareform
/mnt/data/jenkins/workspace/pydelta-next/delta/util.py:docstring of delta.util.compare_pairwise:19: WARNING: 'any' reference target not found: :class:np.ufunc
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:29: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:29: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:11: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:6: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator:1: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:16: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry
/mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:docstring of delta.util.compare_pairwise:3: WARNING: 'any' reference target not found: :func:ssd.squareform
/mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:docstring of delta.util.compare_pairwise:19: WARNING: 'any' reference target not found: :class:np.ufunc
generating indices... genindex py-modindex done
copying notebooks ... [ 50%] CustomizingPipeline.ipynb
copying notebooks ... [100%] GettingStarted.ipynb
highlighting module code... [ 16%] delta.cluster
highlighting module code... [ 33%] delta.corpus
highlighting module code... [ 50%] delta.deltas
highlighting module code... [ 66%] delta.features
highlighting module code... [ 83%] delta.graphics
highlighting module code... [100%] delta.util
writing additional pages... search done
copying images... [ 33%] _build/doctrees/nbsphinx/CustomizingPipeline_11_1.png
copying images... [ 66%] _build/doctrees/nbsphinx/CustomizingPipeline_22_1.png
copying images... [100%] _build/doctrees/nbsphinx/GettingStarted_23_1.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 69 warnings.
The HTML pages are in _build/html.
Build finished. The HTML pages are in _build/html.
[htmlpublisher] Archiving HTML reports...
[htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/docs/_build/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation
Recording test results
[Checks API] No suitable checks publisher found.
[Cobertura] Publishing Cobertura coverage report...
[Cobertura] No coverage results were found using the pattern 'coverage.xml' relative to '/mnt/data/jenkins/workspace/pydelta-next'. Did you enter a pattern relative to the correct directory? Did you generate the XML report(s) for Cobertura?
[Cobertura] Skipped cobertura reports.
[Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@32db444c[nodeId=MDEwOlJlcG9zaXRvcnk4NDYzMzk3MQ==,description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,fork=true,archived=false,visibility=public,size=3540,milestones={},language=Python,commits={},isTemplate=<null>,compareUsePaginatedCommits=false,url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971,nodeId=<null>,createdAt=2017-03-11T08:03:36Z,updatedAt=2021-10-01T14:43:33Z]] (sha:35b0614) with context:pydelta-next
Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/35b061403021005713515a9040488e76886b3b48
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
No emails were triggered.
Finished: SUCCESS
![[Jenkins]](/ci/static/5d841056/images/svgs/logo.svg){kind=logo}
