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Started by GitHub push by ThoraHagen
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics
Cloning the remote Git repository
Cloning repository git://github.com/DARIAH-DE/Topics
 > /usr/bin/git init /mnt/data/jenkins/workspace/DARIAH-Topics # timeout=10
Fetching upstream changes from git://github.com/DARIAH-DE/Topics
 > /usr/bin/git --version # timeout=10
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10
 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10
Fetching upstream changes from git://github.com/DARIAH-DE/Topics
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git rev-parse refs/remotes/origin/testing^{commit} # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10
Checking out Revision fa8b872c7b9d265332c411fa666db2371d256e62 (refs/remotes/origin/testing)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f fa8b872c7b9d265332c411fa666db2371d256e62
Commit message: "added DKProWrapper notebook"
 > /usr/bin/git rev-list --no-walk c642d76502236177ea01170dc42737ed78dceffd # timeout=10
[DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda6488513194368952292.sh
+ pip install -U pip
Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages (18.1)
+ pip install -U -r requirements-dev.txt
Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1))
Collecting pytest (from -r requirements-dev.txt (line 4))
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Collecting regex>=2017.01.14 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
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Collecting gensim>=0.13.2 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/27/a4/d10c0acc8528d838cda5eede0ee9c784caa598dbf40bd0911ff8d067a7eb/gensim-3.6.0-cp36-cp36m-manylinux1_x86_64.whl (23.6MB)
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  Downloading https://files.pythonhosted.org/packages/fd/27/d62628d914bff7f048e2b433c3adea9e7072fa20028f1d4194999051cd9d/lda-1.1.0-cp36-cp36m-manylinux1_x86_64.whl (348kB)
Collecting numpy>=1.3 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/16/21/2e88568c134cc3c8d22af290865e2abbd86efa58a1358ffcb19b6c74f9a3/numpy-1.15.3-cp36-cp36m-manylinux1_x86_64.whl (13.9MB)
Collecting lxml>=3.6.4 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/03/a4/9eea8035fc7c7670e5eab97f34ff2ef0ddd78a491bf96df5accedb0e63f5/lxml-4.2.5-cp36-cp36m-manylinux1_x86_64.whl (5.8MB)
Collecting matplotlib>=1.5.3 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/ed/89/dd823436a5f8d5ca9304b51b554863bfd366ca84708d5812f5ee87c923bc/matplotlib-3.0.0-cp36-cp36m-manylinux1_x86_64.whl (12.8MB)
Collecting bokeh>=0.12.6 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting metadata_toolbox (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting cophi_toolbox>=0.1.1.dev0 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting more-itertools>=4.0.0 (from pytest->-r requirements-dev.txt (line 4))
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Collecting atomicwrites>=1.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/3a/9a/9d878f8d885706e2530402de6417141129a943802c084238914fa6798d97/atomicwrites-1.2.1-py2.py3-none-any.whl
Collecting pluggy>=0.7 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/1c/e7/017c262070af41fe251401cb0d0e1b7c38f656da634cd0c15604f1f30864/pluggy-0.8.0-py2.py3-none-any.whl
Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/3e/c7/3da685ef117d42ac8d71af525208759742dd235f8094221fdaafcd3dba8f/py-1.7.0-py2.py3-none-any.whl (83kB)
Collecting attrs>=17.4.0 (from pytest->-r requirements-dev.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/3a/e1/5f9023cc983f1a628a8c2fd051ad19e76ff7b142a0faf329336f9a62a514/attrs-18.2.0-py2.py3-none-any.whl
Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages (from pytest->-r requirements-dev.txt (line 4)) (40.4.3)
Collecting coverage>=4.4 (from pytest-cov->-r requirements-dev.txt (line 5))
  Using cached https://files.pythonhosted.org/packages/3d/a0/b12090c40e0b8196b973962ec71c1c541a6c04af58ba5ad85683b3de251a/coverage-4.5.1-cp36-cp36m-manylinux1_x86_64.whl
Collecting jupyter-client (from nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/94/dd/fe6c4d683b09eb05342bd2816b7779663f71762b4fa9c2d5203d35d17354/jupyter_client-5.2.3-py2.py3-none-any.whl
Collecting requests (from nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/f1/ca/10332a30cb25b627192b4ea272c351bce3ca1091e541245cccbace6051d8/requests-2.20.0-py2.py3-none-any.whl (60kB)
Collecting ipykernel (from nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/d8/b0/f0be5c5ab335196f5cce96e5b889a4fcf5bfe462eb0acc05cd7e2caf65eb/ipykernel-5.1.0-py3-none-any.whl (113kB)
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Collecting beautifulsoup4 (from nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/21/0a/47fdf541c97fd9b6a610cb5fd518175308a7cc60569962e776ac52420387/beautifulsoup4-4.6.3-py3-none-any.whl (90kB)
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  Downloading https://files.pythonhosted.org/packages/b5/bb/94c493051d60e5b9c0f7f9a368b324201818c1b1c4cae85d1e49a41846c7/nbconvert-5.4.0-py2.py3-none-any.whl (405kB)
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Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/30/9a/a008c7b1183fac9e52066d80a379b3c64eab535bd9d86cdc29a0b766fd82/ipywidgets-7.4.2-py2.py3-none-any.whl (111kB)
Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/cb/ee/6374ae8c21b7d0847f9c3722dcdfac986b8e54fa9ad9ea66e1eb6320d2b8/jupyter_console-6.0.0-py2.py3-none-any.whl
Collecting notebook (from jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/44/16/9f108b675828c4117cfe72d8d0f97094163c40584e40c46ec48a1e862693/notebook-5.7.0-py2.py3-none-any.whl (9.0MB)
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  Downloading https://files.pythonhosted.org/packages/37/22/0d8474f78a8c421d485ac2339de7c871d535160f09f170de90c8185b87c4/qtconsole-4.4.2-py2.py3-none-any.whl (112kB)
Collecting packaging (from sphinx->-r requirements-dev.txt (line 10))
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Collecting entrypoints>=0.2.2 (from nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/cc/8b/4eefa9b47f1910b3d2081da67726b066e379b04ca897acfe9f92bac56147/entrypoints-0.2.3-py2.py3-none-any.whl
Collecting bleach (from nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/d4/0d/4696373c3b714f6022d668fbab619690a42050dbeacede6d10ed97fbd3e2/bleach-3.0.2-py2.py3-none-any.whl (148kB)
Collecting defusedxml (from nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/87/1c/17f3e3935a913dfe2a5ca85fa5ccbef366bfd82eb318b1f75dadbf0affca/defusedxml-0.5.0-py2.py3-none-any.whl
Collecting mistune>=0.8.1 (from nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/09/ec/4b43dae793655b7d8a25f76119624350b4d65eb663459eb9603d7f1f0345/mistune-0.8.4-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl
Collecting ipython-genutils (from nbformat->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/fa/bc/9bd3b5c2b4774d5f33b2d544f1460be9df7df2fe42f352135381c347c69a/ipython_genutils-0.2.0-py2.py3-none-any.whl
Collecting widgetsnbextension~=3.4.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/8a/81/35789a3952afb48238289171728072d26d6e76649ddc8b3588657a2d78c1/widgetsnbextension-3.4.2-py2.py3-none-any.whl (2.2MB)
Collecting prompt-toolkit<2.1.0,>=2.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/06/6f/03f10d2206e34a81934b10fb43975a29028e0fe2ae330f9f000bbc0780b7/prompt_toolkit-2.0.6-py3-none-any.whl (336kB)
Collecting terminado>=0.8.1 (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/2e/20/a26211a24425923d46e1213b376a6ee60dc30bcdf1b0c345e2c3769deb1c/terminado-0.8.1-py2.py3-none-any.whl
Collecting prometheus-client (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/61/84/9aa657b215b04f21a72ca8e50ff159eef9795096683e4581a357baf4dde6/prometheus_client-0.4.2.tar.gz
Collecting Send2Trash (from notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/49/46/c3dc27481d1cc57b9385aff41c474ceb7714f7935b1247194adae45db714/Send2Trash-1.5.0-py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10))
Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 11))
  Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/23/10/c0b78c27298029e4454a472a1919bde20cb182dab1662cec7f2ca1dcc523/boto-2.49.0-py2.py3-none-any.whl
Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/9b/97/6de72ccee57194621f95738535ad2b61f72f981cd3c45a44a1f53cc21341/boto3-1.9.30-py2.py3-none-any.whl (128kB)
Collecting backcall (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Collecting jedi>=0.10 (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/7a/1a/9bd24a185873b998611c2d8d4fb15cd5e8a879ead36355df7ee53e9111bf/jedi-0.13.1-py2.py3-none-any.whl (177kB)
Collecting pexpect; sys_platform != "win32" (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/89/e6/b5a1de8b0cc4e07ca1b305a4fcc3f9806025c1b651ea302646341222f88b/pexpect-4.6.0-py2.py3-none-any.whl
Collecting pickleshare (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/9a/41/220f49aaea88bc6fa6cba8d05ecf24676326156c23b991e80b3f2fc24c77/pickleshare-0.7.5-py2.py3-none-any.whl
Collecting simplegeneric>0.8 (from ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
Collecting webencodings (from bleach->nbconvert->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.1.0,>=2.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl
Collecting ptyprocess; os_name != "nt" (from terminado>=0.8.1->notebook->jupyter->-r requirements-dev.txt (line 9))
  Using cached https://files.pythonhosted.org/packages/d1/29/605c2cc68a9992d18dada28206eeada56ea4bd07a239669da41674648b6f/ptyprocess-0.6.0-py2.py3-none-any.whl
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/b7/31/05c8d001f7f87f0f07289a5fc0fc3832e9a57f2dbd4d3b0fee70e0d51365/jmespath-0.9.3-py2.py3-none-any.whl
Collecting botocore<1.13.0,>=1.12.30 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/d8/8e/8d8f131be049fde5c925c9cf7524791f3601e761b66113892a5dd430a6d7/botocore-1.12.30-py2.py3-none-any.whl (4.7MB)
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/d7/14/2a0004d487464d120c9fb85313a75cd3d71a7506955be458eebfe19a6b1d/s3transfer-0.1.13-py2.py3-none-any.whl
Collecting parso>=0.3.0 (from jedi>=0.10->ipython>=5.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6))
  Using cached https://files.pythonhosted.org/packages/09/51/9c48a46334be50c13d25a3afe55fa05c445699304c5ad32619de953a2305/parso-0.3.1-py2.py3-none-any.whl
Building wheels for collected packages: nbsphinx, regex, smart-open, tornado, parse, prometheus-client
  Running setup.py bdist_wheel for nbsphinx: started
  Running setup.py bdist_wheel for nbsphinx: finished with status 'done'
  Stored in directory: /tmp/pip-ephem-wheel-cache-9ijul47t/wheels/a3/7b/ff/b71160a2e088926eb13abcf8e0cde94c0aa8400c67d3df57f5
  Running setup.py bdist_wheel for regex: started
  Running setup.py bdist_wheel for regex: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/a4/8e/5e/cb6fef2a27a1a25f66505ccd87497fbebdd87222ae1168d970
  Running setup.py bdist_wheel for smart-open: started
  Running setup.py bdist_wheel for smart-open: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/23/00/44/e5b939f7a80c04e32297dbd6d96fa3065af89ecf57e2b5f89f
  Running setup.py bdist_wheel for tornado: started
  Running setup.py bdist_wheel for tornado: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/6d/e1/ce/f4ee2fa420cc6b940123c64992b81047816d0a9fad6b879325
  Running setup.py bdist_wheel for parse: started
  Running setup.py bdist_wheel for parse: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/ef/db/c6/18568a2cc574848f3996ac4552241fbec046b7be29feb2077d
  Running setup.py bdist_wheel for prometheus-client: started
  Running setup.py bdist_wheel for prometheus-client: finished with status 'done'
  Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/b9/96/bc/e2acadc6bbfe57a1f631a34ca4ce6dd057af059b8d6878202b
Successfully built nbsphinx regex smart-open tornado parse prometheus-client
nbsphinx 0.3.5 has requirement nbconvert!=5.4, but you'll have nbconvert 5.4.0 which is incompatible.
Installing collected packages: six, more-itertools, atomicwrites, pluggy, py, attrs, pytest, coverage, pytest-cov, python-dateutil, tornado, ipython-genutils, decorator, traitlets, jupyter-core, pyzmq, jupyter-client, chardet, certifi, urllib3, idna, requests, backcall, parso, jedi, ptyprocess, pexpect, wcwidth, prompt-toolkit, pickleshare, Pygments, simplegeneric, ipython, ipykernel, pyflakes, beautifulsoup4, testpath, entrypoints, webencodings, bleach, defusedxml, jsonschema, nbformat, mistune, pandocfilters, MarkupSafe, Jinja2, nbconvert, nbsmoke, terminado, prometheus-client, Send2Trash, notebook, widgetsnbextension, ipywidgets, jupyter-console, qtconsole, jupyter, pyparsing, packaging, sphinxcontrib-websupport, imagesize, pytz, babel, alabaster, snowballstemmer, docutils, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, boto, bz2file, jmespath, botocore, s3transfer, boto3, smart-open, scipy, gensim, pbr, lda, lxml, kiwisolver, cycler, matplotlib, PyYAML, bokeh, parse, metadata-toolbox, cophi-toolbox, dariah-topics
  Running setup.py develop for dariah-topics
Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.13 Pygments-2.2.0 Send2Trash-1.5.0 alabaster-0.7.12 atomicwrites-1.2.1 attrs-18.2.0 babel-2.6.0 backcall-0.1.0 beautifulsoup4-4.6.3 bleach-3.0.2 bokeh-0.13.0 boto-2.49.0 boto3-1.9.30 botocore-1.12.30 bz2file-0.98 certifi-2018.10.15 chardet-3.0.4 commonmark-0.5.4 cophi-toolbox-0.1.1.dev0 coverage-4.5.1 cycler-0.10.0 dariah-topics decorator-4.3.0 defusedxml-0.5.0 docutils-0.14 entrypoints-0.2.3 gensim-3.6.0 idna-2.7 imagesize-1.1.0 ipykernel-5.1.0 ipython-7.0.1 ipython-genutils-0.2.0 ipywidgets-7.4.2 jedi-0.13.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.3 jupyter-console-6.0.0 jupyter-core-4.4.0 kiwisolver-1.0.1 lda-1.1.0 lxml-4.2.5 matplotlib-3.0.0 metadata-toolbox-0.1.0.dev0 mistune-0.8.4 more-itertools-4.3.0 nbconvert-5.4.0 nbformat-4.4.0 nbsmoke-0.2.7 nbsphinx-0.3.5 notebook-5.7.0 numpy-1.15.3 packaging-18.0 pandas-0.23.4 pandocfilters-1.4.2 parse-1.9.0 parso-0.3.1 pbr-3.1.1 pexpect-4.6.0 pickleshare-0.7.5 pluggy-0.8.0 prometheus-client-0.4.2 prompt-toolkit-2.0.6 ptyprocess-0.6.0 py-1.7.0 pyflakes-2.0.0 pyparsing-2.2.2 pytest-3.9.2 pytest-cov-2.6.0 python-dateutil-2.7.3 pytz-2018.6 pyzmq-17.1.2 qtconsole-4.4.2 recommonmark-0.4.0 regex-2018.8.29 requests-2.20.0 s3transfer-0.1.13 scipy-1.1.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.7.1 snowballstemmer-1.2.1 sphinx-1.8.1 sphinxcontrib-websupport-1.1.0 terminado-0.8.1 testpath-0.4.2 tornado-5.1.1 traitlets-4.3.2 urllib3-1.24 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.4.2
+ ./setup.py sdist bdist_wheel
running sdist
running egg_info
writing dariah_topics.egg-info/PKG-INFO
writing dependency_links to dariah_topics.egg-info/dependency_links.txt
writing requirements to dariah_topics.egg-info/requires.txt
writing top-level names to dariah_topics.egg-info/top_level.txt
reading manifest file 'dariah_topics.egg-info/SOURCES.txt'
writing manifest file 'dariah_topics.egg-info/SOURCES.txt'
running check
creating dariah_topics-1.0.2.dev0
creating dariah_topics-1.0.2.dev0/dariah_topics
creating dariah_topics-1.0.2.dev0/dariah_topics.egg-info
creating dariah_topics-1.0.2.dev0/test
copying files to dariah_topics-1.0.2.dev0...
copying README.md -> dariah_topics-1.0.2.dev0
copying setup.cfg -> dariah_topics-1.0.2.dev0
copying setup.py -> dariah_topics-1.0.2.dev0
copying dariah_topics/__init__.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/evaluation.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/modeling.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/postprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/preprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/utils.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics/visualization.py -> dariah_topics-1.0.2.dev0/dariah_topics
copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/requires.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying dariah_topics.egg-info/top_level.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info
copying test/test_fuzzy_segmenting.py -> dariah_topics-1.0.2.dev0/test
Writing dariah_topics-1.0.2.dev0/setup.cfg
creating dist
Creating tar archive
removing 'dariah_topics-1.0.2.dev0' (and everything under it)
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/dariah_topics
copying dariah_topics/postprocessing.py -> build/lib/dariah_topics
copying dariah_topics/preprocessing.py -> build/lib/dariah_topics
copying dariah_topics/visualization.py -> build/lib/dariah_topics
copying dariah_topics/utils.py -> build/lib/dariah_topics
copying dariah_topics/__init__.py -> build/lib/dariah_topics
copying dariah_topics/modeling.py -> build/lib/dariah_topics
copying dariah_topics/evaluation.py -> build/lib/dariah_topics
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/utils.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/modeling.py -> build/bdist.linux-x86_64/wheel/dariah_topics
copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics
running install_egg_info
Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0-py3.6.egg-info
running install_scripts
adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
creating build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0.dist-info/WHEEL
creating 'dist/dariah_topics-1.0.2.dev0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'dariah_topics/__init__.py'
adding 'dariah_topics/evaluation.py'
adding 'dariah_topics/modeling.py'
adding 'dariah_topics/postprocessing.py'
adding 'dariah_topics/preprocessing.py'
adding 'dariah_topics/utils.py'
adding 'dariah_topics/visualization.py'
adding 'dariah_topics-1.0.2.dev0.dist-info/LICENSE'
adding 'dariah_topics-1.0.2.dev0.dist-info/METADATA'
adding 'dariah_topics-1.0.2.dev0.dist-info/WHEEL'
adding 'dariah_topics-1.0.2.dev0.dist-info/top_level.txt'
adding 'dariah_topics-1.0.2.dev0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.2.dev' to '1.0.2.dev0'
  normalized_version,
+ pytest --nbsmoke-run
============================= test session starts ==============================
platform linux -- Python 3.6.6, pytest-3.9.2, py-1.7.0, pluggy-0.8.0
rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg
plugins: cov-2.6.0, nbsmoke-0.2.7
collected 58 items

dariah_topics/postprocessing.py ...........                              [ 18%]
dariah_topics/preprocessing.py ...........................               [ 65%]
dariah_topics/utils.py ......                                            [ 75%]
notebooks/IntroducingGensim.ipynb .                                      [ 77%]
notebooks/IntroducingLda.ipynb .                                         [ 79%]
notebooks/IntroducingLda_DKProWrapper.ipynb F                            [ 81%]
notebooks/IntroducingMallet.ipynb .                                      [ 82%]
notebooks/Visualizations.ipynb .                                         [ 84%]
test/test_fuzzy_segmenting.py .........                                  [100%]

=================================== FAILURES ===================================
_______________________________________  _______________________________________

self = <CallInfo when='call' exception: An error occurred while executing the following cell:
------------------
meta = pd.co...0m:

ValueError: No objects to concatenate
ValueError: No objects to concatenate
>
func = <function call_runtest_hook.<locals>.<lambda> at 0x7f5465d18048>
when = 'call', treat_keyboard_interrupt_as_exception = False

    def __init__(self, func, when, treat_keyboard_interrupt_as_exception=False):
        #: context of invocation: one of "setup", "call",
        #: "teardown", "memocollect"
        self.when = when
        self.start = time()
        try:
>           self.result = func()

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/_pytest/runner.py:206: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

>       lambda: ihook(item=item, **kwds),
        when=when,
        treat_keyboard_interrupt_as_exception=item.config.getvalue("usepdb"),
    )

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/_pytest/runner.py:188: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <_HookCaller 'pytest_runtest_call'>, args = ()
kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
notincall = set()

    def __call__(self, *args, **kwargs):
        if args:
            raise TypeError("hook calling supports only keyword arguments")
        assert not self.is_historic()
        if self.spec and self.spec.argnames:
            notincall = (
                set(self.spec.argnames) - set(["__multicall__"]) - set(kwargs.keys())
            )
            if notincall:
                warnings.warn(
                    "Argument(s) {} which are declared in the hookspec "
                    "can not be found in this hook call".format(tuple(notincall)),
                    stacklevel=2,
                )
>       return self._hookexec(self, self.get_hookimpls(), kwargs)

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pluggy/hooks.py:284: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <_pytest.config.PytestPluginManager object at 0x7f54a898ec88>
hook = <_HookCaller 'pytest_runtest_call'>
methods = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...54a3d73b00>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f54a3d11160>>]
kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}

    def _hookexec(self, hook, methods, kwargs):
        # called from all hookcaller instances.
        # enable_tracing will set its own wrapping function at self._inner_hookexec
>       return self._inner_hookexec(hook, methods, kwargs)

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pluggy/manager.py:67: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

hook = <_HookCaller 'pytest_runtest_call'>
methods = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...54a3d73b00>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f54a3d11160>>]
kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}

    self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
        methods,
        kwargs,
>       firstresult=hook.spec.opts.get("firstresult") if hook.spec else False,
    )

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pluggy/manager.py:61: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

hook_impls = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...54a3d73b00>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f54a3d11160>>]
caller_kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
firstresult = False

    def _multicall(hook_impls, caller_kwargs, firstresult=False):
        """Execute a call into multiple python functions/methods and return the
        result(s).
    
        ``caller_kwargs`` comes from _HookCaller.__call__().
        """
        __tracebackhide__ = True
        results = []
        excinfo = None
        try:  # run impl and wrapper setup functions in a loop
            teardowns = []
            try:
                for hook_impl in reversed(hook_impls):
                    try:
                        args = [caller_kwargs[argname] for argname in hook_impl.argnames]
                    except KeyError:
                        for argname in hook_impl.argnames:
                            if argname not in caller_kwargs:
                                raise HookCallError(
                                    "hook call must provide argument %r" % (argname,)
                                )
    
                    if hook_impl.hookwrapper:
                        try:
                            gen = hook_impl.function(*args)
                            next(gen)  # first yield
                            teardowns.append(gen)
                        except StopIteration:
                            _raise_wrapfail(gen, "did not yield")
                    else:
                        res = hook_impl.function(*args)
                        if res is not None:
                            results.append(res)
                            if firstresult:  # halt further impl calls
                                break
            except BaseException:
                excinfo = sys.exc_info()
        finally:
            if firstresult:  # first result hooks return a single value
                outcome = _Result(results[0] if results else None, excinfo)
            else:
                outcome = _Result(results, excinfo)
    
            # run all wrapper post-yield blocks
            for gen in reversed(teardowns):
                try:
                    gen.send(outcome)
                    _raise_wrapfail(gen, "has second yield")
                except StopIteration:
                    pass
    
>           return outcome.get_result()

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pluggy/callers.py:208: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <pluggy.callers._Result object at 0x7f546621edd8>

    def get_result(self):
        """Get the result(s) for this hook call.
    
        If the hook was marked as a ``firstresult`` only a single value
        will be returned otherwise a list of results.
        """
        __tracebackhide__ = True
        if self._excinfo is None:
            return self._result
        else:
            ex = self._excinfo
            if _py3:
>               raise ex[1].with_traceback(ex[2])

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pluggy/callers.py:80: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

hook_impls = [<HookImpl plugin_name='runner', plugin=<module '_pytest.runner' from '/mnt/data/jenkins/shiningpanda/jobs/62c67c92/vi...54a3d73b00>>, <HookImpl plugin_name='logging-plugin', plugin=<_pytest.logging.LoggingPlugin object at 0x7f54a3d11160>>]
caller_kwargs = {'item': <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>}
firstresult = False

    def _multicall(hook_impls, caller_kwargs, firstresult=False):
        """Execute a call into multiple python functions/methods and return the
        result(s).
    
        ``caller_kwargs`` comes from _HookCaller.__call__().
        """
        __tracebackhide__ = True
        results = []
        excinfo = None
        try:  # run impl and wrapper setup functions in a loop
            teardowns = []
            try:
                for hook_impl in reversed(hook_impls):
                    try:
                        args = [caller_kwargs[argname] for argname in hook_impl.argnames]
                    except KeyError:
                        for argname in hook_impl.argnames:
                            if argname not in caller_kwargs:
                                raise HookCallError(
                                    "hook call must provide argument %r" % (argname,)
                                )
    
                    if hook_impl.hookwrapper:
                        try:
                            gen = hook_impl.function(*args)
                            next(gen)  # first yield
                            teardowns.append(gen)
                        except StopIteration:
                            _raise_wrapfail(gen, "did not yield")
                    else:
>                       res = hook_impl.function(*args)

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pluggy/callers.py:187: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

item = <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>

    def pytest_runtest_call(item):
        _update_current_test_var(item, "call")
        sys.last_type, sys.last_value, sys.last_traceback = (None, None, None)
        try:
>           item.runtest()

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/_pytest/runner.py:116: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <RunNb '/mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda_DKProWrapper.ipynb'>

    def runtest(self):
        self._skip()
        with io.open(self.name,encoding='utf8') as nb:
            notebook = nbformat.read(nb, as_version=4)
    
            # TODO: which kernel? run in pytest's or use new one (make it option)
            _timeout = self.parent.parent.config.getini('nbsmoke_cell_timeout')
            kwargs = dict(timeout=int(_timeout) if _timeout!='' else 300,
                          allow_errors=False,
                          # or sys.version_info[1] ?
                          kernel_name='python')
    
            ep = ExecutePreprocessor(**kwargs)
            with cwd(os.path.dirname(self.name)): # jupyter notebook always does this, right?
>               ep.preprocess(notebook,{})

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/nbsmoke/__init__.py:274: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f5466273ba8>
nb = {'cells': [{'cell_type': 'markdown', 'metadata': {}, 'source': "# Topics – Easy Topic Modeling in Python\n\nThe text m...'nbconvert_exporter': 'python', 'pygments_lexer': 'ipython3', 'version': '3.5.1'}}, 'nbformat': 4, 'nbformat_minor': 1}
resources = {}, km = None

    def preprocess(self, nb, resources, km=None):
        """
        Preprocess notebook executing each code cell.
    
        The input argument `nb` is modified in-place.
    
        Parameters
        ----------
        nb : NotebookNode
            Notebook being executed.
        resources : dictionary
            Additional resources used in the conversion process. For example,
            passing ``{'metadata': {'path': run_path}}`` sets the
            execution path to ``run_path``.
        km: KernelManager (optional)
            Optional kernel manager. If none is provided, a kernel manager will
            be created.
    
        Returns
        -------
        nb : NotebookNode
            The executed notebook.
        resources : dictionary
            Additional resources used in the conversion process.
        """
    
        with self.setup_preprocessor(nb, resources, km=km):
            self.log.info("Executing notebook with kernel: %s" % self.kernel_name)
>           nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources)

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/nbconvert/preprocessors/execute.py:361: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f5466273ba8>
nb = {'cells': [{'cell_type': 'markdown', 'metadata': {}, 'source': "# Topics – Easy Topic Modeling in Python\n\nThe text m...'nbconvert_exporter': 'python', 'pygments_lexer': 'ipython3', 'version': '3.5.1'}}, 'nbformat': 4, 'nbformat_minor': 1}
resources = {}

    def preprocess(self, nb, resources):
        """
        Preprocessing to apply on each notebook.
    
        Must return modified nb, resources.
    
        If you wish to apply your preprocessing to each cell, you might want
        to override preprocess_cell method instead.
    
        Parameters
        ----------
        nb : NotebookNode
            Notebook being converted
        resources : dictionary
            Additional resources used in the conversion process.  Allows
            preprocessors to pass variables into the Jinja engine.
        """
        for index, cell in enumerate(nb.cells):
>           nb.cells[index], resources = self.preprocess_cell(cell, resources, index)

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/nbconvert/preprocessors/base.py:69: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f5466273ba8>
cell = {'cell_type': 'code', 'execution_count': 7, 'metadata': {'collapsed': False, 'scrolled': True}, 'outputs': [{'output_t...ath_to_corpus.glob('*.csv')])\nmeta[:5] # by adding '[:5]' to the variable, only the first 5 elements will be printed"}
resources = {}, cell_index = 19

    def preprocess_cell(self, cell, resources, cell_index):
        """
        Executes a single code cell. See base.py for details.
    
        To execute all cells see :meth:`preprocess`.
        """
        if cell.cell_type != 'code' or not cell.source.strip():
            return cell, resources
    
        reply, outputs = self.run_cell(cell, cell_index)
        cell.outputs = outputs
    
        cell_allows_errors = (self.allow_errors or "raises-exception"
                              in cell.metadata.get("tags", []))
    
        if self.force_raise_errors or not cell_allows_errors:
            for out in outputs:
                if out.output_type == 'error':
>                   raise CellExecutionError.from_cell_and_msg(cell, out)
E                   nbconvert.preprocessors.execute.CellExecutionError: An error occurred while executing the following cell:
E                   ------------------
E                   meta = pd.concat([metadata.fname2metadata(str(path), pattern=pattern) for path in path_to_corpus.glob('*.csv')])
E                   meta[:5] # by adding '[:5]' to the variable, only the first 5 elements will be printed
E                   ------------------
E                   
E                   ---------------------------------------------------------------------------
E                   ValueError                                Traceback (most recent call last)
E                   <ipython-input-7-30c5c181683a> in <module>
E                   ----> 1 meta = pd.concat([metadata.fname2metadata(str(path), pattern=pattern) for path in path_to_corpus.glob('*.csv')])
E                         2 meta[:5] # by adding '[:5]' to the variable, only the first 5 elements will be printed
E                   
E                   ~/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pandas/core/reshape/concat.py in concat(objs, axis, join, join_axes, ignore_index, keys, levels, names, verify_integrity, sort, copy)
E                       223                        keys=keys, levels=levels, names=names,
E                       224                        verify_integrity=verify_integrity,
E                   --> 225                        copy=copy, sort=sort)
E                       226     return op.get_result()
E                       227 
E                   
E                   ~/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/pandas/core/reshape/concat.py in __init__(self, objs, axis, join, join_axes, keys, levels, names, ignore_index, verify_integrity, copy, sort)
E                       257 
E                       258         if len(objs) == 0:
E                   --> 259             raise ValueError('No objects to concatenate')
E                       260 
E                       261         if keys is None:
E                   
E                   ValueError: No objects to concatenate
E                   ValueError: No objects to concatenate

../../shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/nbconvert/preprocessors/execute.py:385: CellExecutionError
--- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ----

----------- coverage: platform linux, python 3.6.6-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml

=============================== warnings summary ===============================
/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/utils.py:290: DeprecationWarning: invalid escape sequence \p
  """

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/scipy/sparse/sparsetools.py:21: DeprecationWarning: `scipy.sparse.sparsetools` is deprecated!
scipy.sparse.sparsetools is a private module for scipy.sparse, and should not be used.
  _deprecated()

/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:657: DeprecationWarning: invalid escape sequence \p
  """

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
  score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
  score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
  score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)
/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/gensim/models/ldamodel.py:1077: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.from_iter(generator)) or the python sum builtin instead.
  score += np.sum(cnt * logsumexp(Elogthetad + Elogbeta[:, int(id)]) for id, cnt in doc)

/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
  """

/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead.
  """

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
  document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead
  document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id]))

/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.6/site-packages/jupyter_client/manager.py:72: DeprecationWarning: KernelManager._kernel_name_changed is deprecated in traitlets 4.1: use @observe and @unobserve instead.
  def _kernel_name_changed(self, name, old, new):

source:409: DeprecationWarning: invalid escape sequence \.

-- Docs: https://docs.pytest.org/en/latest/warnings.html
============== 1 failed, 57 passed, 13 warnings in 86.01 seconds ===============
Build step 'Virtualenv Builder' marked build as failure
Recording test results
[Cobertura] Publishing Cobertura coverage report...

[Cobertura] Publishing Cobertura coverage results...

[Cobertura] Cobertura coverage report found.

[Set GitHub commit status (universal)] ERROR on repos [GHRepository@77f168e0[description=A Python library for topic modeling.,homepage=https://dariah-de.github.io/Topics,name=Topics,fork=true,size=42286,milestones={},language=Python,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 24 Oct 2018 13:46:18 GMT], ETag=[W/"4a884231fceb92fe7f52265bd3eb6e4f"], Last-Modified=[Thu, 04 Oct 2018 17:51:13 GMT], OkHttp-Received-Millis=[1540388778930], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1540388778721], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[ECE0:4347:3C0C1EF:866462B:5BD077AA], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4983], X-RateLimit-Reset=[1540391454], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:fa8b872) with context:DARIAH-Topics
Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/fa8b872c7b9d265332c411fa666db2371d256e62
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
[ci-game] evaluating rule: Build result
[ci-game] scored: -10.0
[ci-game] evaluating rule: Increased number of passed tests
[ci-game] evaluating rule: Decreased number of passed tests
[ci-game] evaluating rule: Increased number of failed tests
[ci-game] evaluating rule: Decreased number of failed tests
[ci-game] evaluating rule: Increased number of skipped tests
[ci-game] evaluating rule: Decreased number of skipped tests
[ci-game] evaluating rule: Open HIGH priority tasks
[ci-game] evaluating rule: Open NORMAL priority tasks
[ci-game] evaluating rule: Open LOW priority tasks
[ci-game] evaluating rule: Changed number of compiler warnings
Finished: FAILURE