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Started by GitHub push by severinsimmler Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics Cloning the remote Git repository Cloning repository https://github.com/DARIAH-DE/Topics > git init /mnt/data/jenkins/workspace/DARIAH-Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision fba5b845191408f52a71e6ccc315d93065334f7d (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f fba5b845191408f52a71e6ccc315d93065334f7d > git rev-list 891d6cb292f4fbd95647e4c49f2abfc22f2dc82e # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda2415579931053688112.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Downloading nose-1.3.7-py3-none-any.whl (154kB) Collecting nosexcover (from -r requirements-dev.txt (line 3)) Downloading nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Downloading jupyter-1.0.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pandas-0.19.2-cp35-cp35m-manylinux1_x86_64.whl (18.5MB) Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading regex-2017.02.08.tar.gz (600kB) Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading gensim-1.0.1.tar.gz (13.9MB) Collecting matplotlib==1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading matplotlib-1.5.3-cp35-cp35m-manylinux1_x86_64.whl (13.7MB) Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading numpy-1.12.1-cp35-cp35m-manylinux1_x86_64.whl (16.8MB) Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading scipy-0.19.0-cp35-cp35m-manylinux1_x86_64.whl (47.9MB) Collecting werkzeug>=0.11.15 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading Werkzeug-0.12.1-py2.py3-none-any.whl (312kB) Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading Flask-0.12-py2.py3-none-any.whl (82kB) Collecting wikipedia>=1.4.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading wikipedia-1.4.0.tar.gz Collecting lxml>=3.6.4 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading lxml-3.7.3-cp35-cp35m-manylinux1_x86_64.whl (7.1MB) Collecting pyLDAvis>=2.0.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pyLDAvis-2.1.1.tar.gz (1.6MB) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Downloading coverage-4.3.4-cp35-cp35m-manylinux1_x86_64.whl (191kB) Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Downloading nbconvert-5.1.1-py2.py3-none-any.whl (372kB) Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Downloading ipykernel-4.5.2-py2.py3-none-any.whl (98kB) Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Downloading jupyter_console-5.1.0-py2.py3-none-any.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Downloading qtconsole-4.2.1-py2.py3-none-any.whl (104kB) Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Downloading notebook-4.4.1-py2.py3-none-any.whl (6.9MB) Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Downloading ipywidgets-6.0.0-py2.py3-none-any.whl (46kB) Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading python_dateutil-2.6.0-py2.py3-none-any.whl (194kB) Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pytz-2016.10-py2.py3-none-any.whl (483kB) Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting smart_open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading smart_open-1.5.1.tar.gz Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting cycler (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading cycler-0.10.0-py2.py3-none-any.whl Collecting Jinja2>=2.4 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading Jinja2-2.9.5-py2.py3-none-any.whl (340kB) Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading itsdangerous-0.24.tar.gz (46kB) Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading click-6.7-py2.py3-none-any.whl (71kB) Collecting beautifulsoup4 (from wikipedia>=1.4.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading beautifulsoup4-4.5.3-py3-none-any.whl (85kB) Collecting requests<3.0.0,>=2.0.0 (from wikipedia>=1.4.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading requests-2.13.0-py2.py3-none-any.whl (584kB) Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting joblib>=0.8.4 (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading joblib-0.11-py2.py3-none-any.whl (176kB) Collecting numexpr (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading numexpr-2.6.2-cp35-cp35m-manylinux1_x86_64.whl (377kB) Collecting pytest (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading pytest-3.0.7-py2.py3-none-any.whl (172kB) Collecting future (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading future-0.16.0.tar.gz (824kB) Collecting funcy (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading funcy-1.7.3.tar.gz Collecting nbformat (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading nbformat-4.3.0-py2.py3-none-any.whl (154kB) Collecting mistune!=0.6 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading mistune-0.7.4-py2.py3-none-any.whl Collecting pygments (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading Pygments-2.2.0-py2.py3-none-any.whl (841kB) Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading testpath-0.3-py2.py3-none-any.whl (82kB) Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading pandocfilters-1.4.1.tar.gz Collecting jupyter-core (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading jupyter_core-4.3.0-py2.py3-none-any.whl (76kB) Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading bleach-2.0.0-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading entrypoints-0.2.2-py2.py3-none-any.whl Collecting traitlets>=4.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading traitlets-4.3.2-py2.py3-none-any.whl (74kB) Collecting jupyter-client (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading jupyter_client-5.0.0-py2.py3-none-any.whl (83kB) Collecting ipython>=4.0.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading ipython-5.3.0-py3-none-any.whl (750kB) Collecting tornado>=4.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading tornado-4.4.2.tar.gz (460kB) Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Downloading prompt_toolkit-1.0.14-py3-none-any.whl (248kB) Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading terminado-0.6.tar.gz Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting widgetsnbextension~=2.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Downloading widgetsnbextension-2.0.0-py2.py3-none-any.whl (1.1MB) Collecting boto>=2.32 (from smart_open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading boto-2.46.1-py2.py3-none-any.whl (1.4MB) Collecting bz2file (from smart_open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading bz2file-0.98.tar.gz Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading MarkupSafe-1.0.tar.gz Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting py>=1.4.29 (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Downloading py-1.4.33-py2.py3-none-any.whl (83kB) Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading jsonschema-2.6.0-py2.py3-none-any.whl Collecting html5lib>=0.99999999 (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading html5lib-0.999999999-py2.py3-none-any.whl (112kB) Collecting decorator (from traitlets>=4.2->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading decorator-4.0.11-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl (3.0MB) Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading pexpect-4.2.1-py2.py3-none-any.whl (55kB) Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading simplegeneric-0.8.1.zip Collecting pickleshare (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading pickleshare-0.7.4-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Downloading wcwidth-0.1.7-py2.py3-none-any.whl Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Downloading ptyprocess-0.5.1-py2.py3-none-any.whl Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting webencodings (from html5lib>=0.99999999->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Downloading webencodings-0.5.tar.gz Building wheels for collected packages: regex, gensim, wikipedia, pyLDAvis, smart-open, itsdangerous, future, funcy, pandocfilters, tornado, terminado, bz2file, MarkupSafe, simplegeneric, webencodings Running setup.py bdist_wheel for regex: started Running setup.py bdist_wheel for regex: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/3c/2f/53/c414a050ef8abf0f54aea9faad26bd818f677a174e98b17b28 Running setup.py bdist_wheel for gensim: started Running setup.py bdist_wheel for gensim: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/56/24/f8/ee757cf68624c87f593a40fbe91d6f47e038027f3baf36ebfa Running setup.py bdist_wheel for wikipedia: started Running setup.py bdist_wheel for wikipedia: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/bf/87/25/df698dd7b66a42c1c5f3bd36f8155d4518d210f5e2c128b440 Running setup.py bdist_wheel for pyLDAvis: started Running setup.py bdist_wheel for pyLDAvis: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/de/41/af/cba16e4c15ff942728f3345c8f165831b03ad7f4d87cff8b6e Running setup.py bdist_wheel for smart-open: started Running setup.py bdist_wheel for smart-open: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/1a/cc/81/165d5179582fd526bf6f27a40d9c5aa30377c4385d8dc4b9a7 Running setup.py bdist_wheel for itsdangerous: started Running setup.py bdist_wheel for itsdangerous: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/fc/a8/66/24d655233c757e178d45dea2de22a04c6d92766abfb741129a Running setup.py bdist_wheel for future: started Running setup.py bdist_wheel for future: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/c2/50/7c/0d83b4baac4f63ff7a765bd16390d2ab43c93587fac9d6017a Running setup.py bdist_wheel for funcy: started Running setup.py bdist_wheel for funcy: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/db/74/4c/906561563122414c88b1b232bcc3bce7959db80c1d747149c7 Running setup.py bdist_wheel for pandocfilters: started Running setup.py bdist_wheel for pandocfilters: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/d4/01/68/49055c80b9f01ccb49241e73c8019628605064730941d70b56 Running setup.py bdist_wheel for tornado: started Running setup.py bdist_wheel for tornado: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/b3/db/47/46e05d1ee3ecfba252fcab42f0a156dab0df0cddf99fa0827c Running setup.py bdist_wheel for terminado: started Running setup.py bdist_wheel for terminado: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/3b/c2/ea/af635ffb63857a8c2ddd22da6a4b52f5b7ea3065db94ef5d7c Running setup.py bdist_wheel for bz2file: started Running setup.py bdist_wheel for bz2file: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/31/9c/20/996d65ca104cbca940b1b053299b68459391c01c774d073126 Running setup.py bdist_wheel for MarkupSafe: started Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/88/a7/30/e39a54a87bcbe25308fa3ca64e8ddc75d9b3e5afa21ee32d57 Running setup.py bdist_wheel for simplegeneric: started Running setup.py bdist_wheel for simplegeneric: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/7b/31/08/c85e74c84188cbec6a6827beec4d640f2bd78ae003dc1ec09d Running setup.py bdist_wheel for webencodings: started Running setup.py bdist_wheel for webencodings: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/0a/73/c2/1dcc99951b6aeac495e7695505d1837616ca194938f07d1d7b Successfully built regex gensim wikipedia pyLDAvis smart-open itsdangerous future funcy pandocfilters tornado terminado bz2file MarkupSafe simplegeneric webencodings Installing collected packages: nose, coverage, nosexcover, ipython-genutils, decorator, traitlets, jupyter-core, jsonschema, nbformat, mistune, pygments, testpath, pandocfilters, webencodings, html5lib, bleach, entrypoints, MarkupSafe, Jinja2, nbconvert, pyzmq, python-dateutil, jupyter-client, ptyprocess, pexpect, simplegeneric, wcwidth, prompt-toolkit, pickleshare, ipython, tornado, ipykernel, jupyter-console, qtconsole, terminado, notebook, widgetsnbextension, ipywidgets, jupyter, numpy, pytz, pandas, regex, scipy, boto, bz2file, requests, smart-open, gensim, cycler, matplotlib, werkzeug, itsdangerous, click, flask, beautifulsoup4, wikipedia, lxml, joblib, numexpr, py, pytest, future, funcy, pyLDAvis, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.9.5 MarkupSafe-1.0 beautifulsoup4-4.5.3 bleach-2.0.0 boto-2.46.1 bz2file-0.98 click-6.7 coverage-4.3.4 cycler-0.10.0 dariah-topics decorator-4.0.11 entrypoints-0.2.2 flask-0.12 funcy-1.7.3 future-0.16.0 gensim-1.0.1 html5lib-0.999999999 ipykernel-4.5.2 ipython-5.3.0 ipython-genutils-0.2.0 ipywidgets-6.0.0 itsdangerous-0.24 joblib-0.11 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.0.0 jupyter-console-5.1.0 jupyter-core-4.3.0 lxml-3.7.3 matplotlib-1.5.3 mistune-0.7.4 nbconvert-5.1.1 nbformat-4.3.0 nose-1.3.7 nosexcover-1.0.11 notebook-4.4.1 numexpr-2.6.2 numpy-1.12.1 pandas-0.19.2 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.14 ptyprocess-0.5.1 py-1.4.33 pyLDAvis-2.1.1 pygments-2.2.0 pytest-3.0.7 python-dateutil-2.6.0 pytz-2016.10 pyzmq-16.0.2 qtconsole-4.2.1 regex-2017.2.8 requests-2.13.0 scipy-0.19.0 simplegeneric-0.8.1 smart-open-1.5.1 terminado-0.6 testpath-0.3 tornado-4.4.2 traitlets-4.3.2 wcwidth-0.1.7 webencodings-0.5 werkzeug-0.12.1 widgetsnbextension-2.0.0 wikipedia-1.4.0 + ./setup.py sdist bdist_wheel running sdist running egg_info writing requirements to dariah_topics.egg-info/requires.txt writing dariah_topics.egg-info/PKG-INFO writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing top-level names to dariah_topics.egg-info/top_level.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:334: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0' normalized_version, warning: sdist: standard file not found: should have one of README, README.rst, README.txt running check warning: check: missing required meta-data: url creating dariah_topics-0.2.0.dev0 creating dariah_topics-0.2.0.dev0/dariah_topics creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info creating dariah_topics-0.2.0.dev0/test copying files to dariah_topics-0.2.0.dev0... copying setup.cfg -> dariah_topics-0.2.0.dev0 copying setup.py -> dariah_topics-0.2.0.dev0 copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.2.0.dev0/test Writing dariah_topics-0.2.0.dev0/setup.cfg creating dist Creating tar archive removing 'dariah_topics-0.2.0.dev0' (and everything under it) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/dariah_topics copying dariah_topics/preprocessing.py -> build/lib/dariah_topics copying dariah_topics/model_creation.py -> build/lib/dariah_topics copying dariah_topics/mallet.py -> build/lib/dariah_topics copying dariah_topics/evaluation.py -> build/lib/dariah_topics copying dariah_topics/__init__.py -> build/lib/dariah_topics copying dariah_topics/doclist.py -> build/lib/dariah_topics copying dariah_topics/visualization.py -> build/lib/dariah_topics installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL + nosetests /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') FF./mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/util.py:453: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead inspect.getargspec(func) ..........E........... ====================================================================== ERROR: Integration test notebook (via Jupyter) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 20, in jupyter_integration_test stderr=STDOUT, universal_newlines=True) File "/usr/lib/python3.5/subprocess.py", line 316, in check_output **kwargs).stdout File "/usr/lib/python3.5/subprocess.py", line 398, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1 -------------------- >> begin captured logging << -------------------- root: ERROR: An error occurred while executing the following cell: ------------------ from dariah_topics import preprocessing as pre from dariah_topics import visualization as visual from dariah_topics import mallet as mal from dariah_topics import evaluation ------------------ ImportError: No module named 'gensim' --------------------- >> end captured logging << --------------------- ====================================================================== FAIL: Doctest: dariah_topics.mallet.create_mallet_binary ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.5/doctest.py", line 2190, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for dariah_topics.mallet.create_mallet_binary File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 39, in create_mallet_binary ---------------------------------------------------------------------- File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 64, in dariah_topics.mallet.create_mallet_binary Failed example: create_mallet_binary(path_to_file='testfile.txt') Expected: "binary.mallet" Got: 'mallet_output/binary.mallet' -------------------- >> begin captured logging << -------------------- gensim.models.doc2vec: DEBUG: Fast version of gensim.models.doc2vec is being used summa.preprocessing.cleaner: INFO: 'pattern' package not found; tag filters are not available for English root: INFO: Generating grammar tables from /usr/lib/python3.5/lib2to3/Grammar.txt root: INFO: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt mallet: INFO: Creating output folder ... mallet: INFO: Accessing MALLET with ['mallet', 'import-file', '--input', 'testfile.txt', '--remove-stopwords', '--output', 'mallet_output/binary.mallet', '--keep-sequence'] ... mallet: DEBUG: --------------------- >> end captured logging << --------------------- ====================================================================== FAIL: Doctest: dariah_topics.mallet.create_mallet_model ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.5/doctest.py", line 2190, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for dariah_topics.mallet.create_mallet_model File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 121, in create_mallet_model ---------------------------------------------------------------------- File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 167, in dariah_topics.mallet.create_mallet_model Failed example: create_mallet_model(path_to_binary=binary.mallet) Exception raised: Traceback (most recent call last): File "/usr/lib/python3.5/doctest.py", line 1321, in __run compileflags, 1), test.globs) File "<doctest dariah_topics.mallet.create_mallet_model[0]>", line 1, in <module> create_mallet_model(path_to_binary=binary.mallet) NameError: name 'binary' is not defined Name Stmts Miss Cover ----------------------------------------------------- dariah_topics.py 0 0 100% dariah_topics/doclist.py 89 14 84% dariah_topics/evaluation.py 100 80 20% dariah_topics/mallet.py 216 170 21% dariah_topics/model_creation.py 60 43 28% dariah_topics/preprocessing.py 232 124 47% dariah_topics/visualization.py 166 136 18% ----------------------------------------------------- TOTAL 863 567 34% ---------------------------------------------------------------------- Ran 25 tests in 9.691s FAILED (errors=1, failures=2) Build step 'Virtualenv Builder' marked build as failure Recording test results Skipping Cobertura coverage report as build was not UNSTABLE or better ... [Set GitHub commit status (universal)] ERROR on repos [GHRepository@24e84866[description=A python library for topic modeling.,homepage=,name=Topics,license=<null>,fork=true,size=95850,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:fba5b84) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/fba5b845191408f52a71e6ccc315d93065334f7d [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE