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Started by user Thorsten Vitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 0d2f5407be9d9538020a66c5062cc4bacc636310 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 0d2f5407be9d9538020a66c5062cc4bacc636310 > git rev-list 0d2f5407be9d9538020a66c5062cc4bacc636310 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda6099172919061803933.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U --pre jupyter Collecting jupyter Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting notebook (from jupyter) Using cached notebook-4.3.1-py2.py3-none-any.whl Collecting ipykernel (from jupyter) Using cached ipykernel-4.5.2-py2.py3-none-any.whl Collecting nbconvert (from jupyter) Using cached nbconvert-5.1.1-py2.py3-none-any.whl Collecting qtconsole (from jupyter) Using cached qtconsole-4.2.1-py2.py3-none-any.whl Collecting ipywidgets (from jupyter) Downloading ipywidgets-6.0.0b6-py2.py3-none-any.whl (44kB) Collecting jupyter-console (from jupyter) Using cached jupyter_console-5.0.0-py2.py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter) Collecting jinja2 (from notebook->jupyter) Using cached Jinja2-2.9.4-py2.py3-none-any.whl Collecting jupyter-core (from notebook->jupyter) Using cached jupyter_core-4.2.1-py2.py3-none-any.whl Collecting tornado>=4 (from notebook->jupyter) Collecting nbformat (from notebook->jupyter) Using cached nbformat-4.2.0-py2.py3-none-any.whl Collecting traitlets (from notebook->jupyter) Using cached traitlets-4.3.1-py2.py3-none-any.whl Collecting jupyter-client (from notebook->jupyter) Using cached jupyter_client-4.4.0-py2.py3-none-any.whl Collecting ipython-genutils (from notebook->jupyter) Using cached ipython_genutils-0.1.0-py2.py3-none-any.whl Collecting ipython>=4.0.0 (from ipykernel->jupyter) Using cached ipython-5.1.0-py3-none-any.whl Collecting mistune!=0.6 (from nbconvert->jupyter) Using cached mistune-0.7.3-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter) Collecting bleach (from nbconvert->jupyter) Using cached bleach-1.5.0-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter) Using cached entrypoints-0.2.2-py2.py3-none-any.whl Collecting pygments (from nbconvert->jupyter) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting testpath (from nbconvert->jupyter) Using cached testpath-0.3-py2.py3-none-any.whl Collecting widgetsnbextension~=2.0.0b8 (from ipywidgets->jupyter) Downloading widgetsnbextension-2.0.0b13-py2.py3-none-any.whl (1.1MB) Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter) Using cached prompt_toolkit-1.0.9-py3-none-any.whl Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter) Using cached ptyprocess-0.5.1-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from jinja2->notebook->jupyter) Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->notebook->jupyter) Using cached jsonschema-2.5.1-py2.py3-none-any.whl Requirement already up-to-date: six in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from traitlets->notebook->jupyter) Collecting decorator (from traitlets->notebook->jupyter) Using cached decorator-4.0.11-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->notebook->jupyter) Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting pickleshare (from ipython>=4.0.0->ipykernel->jupyter) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->jupyter) Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->jupyter) Using cached pexpect-4.2.1-py2.py3-none-any.whl Requirement already up-to-date: setuptools>=18.5 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->jupyter) Collecting html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 (from bleach->nbconvert->jupyter) Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools>=18.5->ipython>=4.0.0->ipykernel->jupyter) Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools>=18.5->ipython>=4.0.0->ipykernel->jupyter) Requirement already up-to-date: pyparsing in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from packaging>=16.8->setuptools>=18.5->ipython>=4.0.0->ipykernel->jupyter) Installing collected packages: tornado, ptyprocess, terminado, ipython-genutils, decorator, traitlets, jupyter-core, pyzmq, jupyter-client, pickleshare, simplegeneric, pexpect, pygments, wcwidth, prompt-toolkit, ipython, ipykernel, MarkupSafe, jinja2, mistune, pandocfilters, html5lib, bleach, entrypoints, jsonschema, nbformat, testpath, nbconvert, notebook, qtconsole, widgetsnbextension, ipywidgets, jupyter-console, jupyter Successfully installed MarkupSafe-0.23 bleach-1.5.0 decorator-4.0.11 entrypoints-0.2.2 html5lib-0.9999999 ipykernel-4.5.2 ipython-5.1.0 ipython-genutils-0.1.0 ipywidgets-6.0.0b6 jinja2-2.9.4 jsonschema-2.5.1 jupyter-1.0.0 jupyter-client-4.4.0 jupyter-console-5.0.0 jupyter-core-4.2.1 mistune-0.7.3 nbconvert-5.1.1 nbformat-4.2.0 notebook-4.3.1 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.9 ptyprocess-0.5.1 pygments-2.2.0 pyzmq-16.0.2 qtconsole-4.2.1 simplegeneric-0.8.1 terminado-0.6 testpath-0.3 tornado-4.4.2 traitlets-4.3.1 wcwidth-0.1.7 widgetsnbextension-2.0.0b13 + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Requirement already up-to-date: jupyter in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 4)) Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pandas-0.19.2-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting matplotlib==1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached matplotlib-1.5.3-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached numpy-1.12.0-cp35-cp35m-manylinux1_x86_64.whl Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached scipy-0.18.1-cp35-cp35m-manylinux1_x86_64.whl Collecting werkzeug>=0.11.15 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Werkzeug-0.11.15-py2.py3-none-any.whl Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Flask-0.12-py2.py3-none-any.whl Collecting pyLDAvis>=2.0.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.3.4-cp35-cp35m-manylinux1_x86_64.whl Requirement already up-to-date: nbconvert in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jupyter-console in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipykernel in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: notebook in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: qtconsole in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipywidgets in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pytz-2016.10-py2.py3-none-any.whl Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.0-py2.py3-none-any.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting cycler (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Requirement already up-to-date: Jinja2>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting funcy (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting joblib>=0.8.4 (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached joblib-0.10.3-py2.py3-none-any.whl Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting pytest (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pytest-3.0.6-py2.py3-none-any.whl Collecting future (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting numexpr (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached numexpr-2.6.1-cp35-cp35m-manylinux1_x86_64.whl Requirement already up-to-date: nbformat in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jupyter-core in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: entrypoints>=0.2.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: mistune!=0.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: testpath in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: traitlets>=4.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pandocfilters>=1.4.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: bleach in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pygments in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: prompt-toolkit<2.0.0,>=1.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jupyter-client in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipython in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: tornado>=4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: terminado>=0.3.3; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: widgetsnbextension~=2.0.0b8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached boto-2.45.0-py2.py3-none-any.whl Collecting requests (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached requests-2.13.0-py2.py3-none-any.whl Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting py>=1.4.29 (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached py-1.4.32-py2.py3-none-any.whl Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: decorator in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from traitlets>=4.2->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pyzmq>=13 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-client->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pexpect; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ptyprocess in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Installing collected packages: nose, coverage, nosexcover, pytz, numpy, python-dateutil, pandas, regex, scipy, bz2file, boto, requests, smart-open, gensim, cycler, matplotlib, werkzeug, click, itsdangerous, flask, funcy, joblib, py, pytest, future, numexpr, pyLDAvis, dariah-topics Running setup.py develop for dariah-topics Successfully installed boto-2.45.0 bz2file-0.98 click-6.7 coverage-4.3.4 cycler-0.10.0 dariah-topics flask-0.12 funcy-1.7.2 future-0.16.0 gensim-0.13.4.1 itsdangerous-0.24 joblib-0.10.3 matplotlib-1.5.3 nose-1.3.7 nosexcover-1.0.11 numexpr-2.6.1 numpy-1.12.0 pandas-0.19.2 py-1.4.32 pyLDAvis-2.1.0 pytest-3.0.6 python-dateutil-2.6.0 pytz-2016.10 regex-2017.1.17 requests-2.13.0 scipy-0.18.1 smart-open-1.3.5 werkzeug-0.11.15 + ./setup.py sdist bdist_wheel running sdist running egg_info writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing dariah_topics.egg-info/PKG-INFO writing top-level names to dariah_topics.egg-info/top_level.txt writing requirements to dariah_topics.egg-info/requires.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:333: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0' normalized_version, warning: sdist: standard file not found: should have one of README, README.rst, README.txt running check warning: check: missing required meta-data: url creating dariah_topics-0.2.0.dev0 creating dariah_topics-0.2.0.dev0/dariah_topics creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying files to dariah_topics-0.2.0.dev0... copying setup.cfg -> dariah_topics-0.2.0.dev0 copying setup.py -> dariah_topics-0.2.0.dev0 copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info Writing dariah_topics-0.2.0.dev0/setup.cfg Creating tar archive removing 'dariah_topics-0.2.0.dev0' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL + nosetests /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) .E.. ====================================================================== ERROR: Tries to run the integration test notebook using jupyter. ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 16, in jupyter_integration_test stderr=STDOUT, universal_newlines=True) File "/usr/lib/python3.5/subprocess.py", line 316, in check_output **kwargs).stdout File "/usr/lib/python3.5/subprocess.py", line 398, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1 -------------------- >> begin captured logging << -------------------- root: ERROR: [NbConvertApp] Converting notebook /mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb to html [NbConvertApp] Executing notebook with kernel: python3 Traceback (most recent call last): File "/usr/lib/python3.5/runpy.py", line 183, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/usr/lib/python3.5/runpy.py", line 142, in _get_module_details return _get_module_details(pkg_main_name, error) File "/usr/lib/python3.5/runpy.py", line 109, in _get_module_details __import__(pkg_name) File "/usr/lib/python3/dist-packages/ipykernel/__init__.py", line 2, in <module> from .connect import * File "/usr/lib/python3/dist-packages/ipykernel/connect.py", line 14, in <module> from IPython.paths import get_ipython_dir ImportError: No module named 'IPython.paths' Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/jupyter-nbconvert", line 11, in <module> sys.exit(main()) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_core/application.py", line 267, in launch_instance return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/traitlets/config/application.py", line 658, in launch_instance app.start() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 305, in start self.convert_notebooks() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 473, in convert_notebooks self.convert_single_notebook(notebook_filename) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 444, in convert_single_notebook output, resources = self.export_single_notebook(notebook_filename, resources, input_buffer=input_buffer) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 373, in export_single_notebook output, resources = self.exporter.from_filename(notebook_filename, resources=resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 171, in from_filename return self.from_file(f, resources=resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 189, in from_file return self.from_notebook_node(nbformat.read(file_stream, as_version=4), resources=resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/html.py", line 69, in from_notebook_node return super(HTMLExporter, self).from_notebook_node(nb, resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/templateexporter.py", line 236, in from_notebook_node nb_copy, resources = super(TemplateExporter, self).from_notebook_node(nb, resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 131, in from_notebook_node nb_copy, resources = self._preprocess(nb_copy, resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 308, in _preprocess nbc, resc = preprocessor(nbc, resc) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 47, in __call__ return self.preprocess(nb,resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 207, in preprocess cwd=path) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 192, in start_new_kernel kc.wait_for_ready(timeout=startup_timeout) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_client/blocking/client.py", line 59, in wait_for_ready raise RuntimeError('Kernel died before replying to kernel_info') RuntimeError: Kernel died before replying to kernel_info --------------------- >> end captured logging << --------------------- Name Stmts Miss Cover ----------------------------------------------------- dariah_topics.py 0 0 100% dariah_topics/mallet.py 77 59 23% dariah_topics/model_creation.py 60 43 28% dariah_topics/preprocessing.py 127 35 72% dariah_topics/visualization.py 113 89 21% ----------------------------------------------------- TOTAL 377 226 40% ---------------------------------------------------------------------- Ran 4 tests in 4.084s FAILED (errors=1) Build step 'Virtualenv Builder' marked build as failure Recording test results Skipping Cobertura coverage report as build was not UNSTABLE or better ... Sending e-mails to: noreply@github.com thorsten.vitt@uni-wuerzburg.de cyberpillip@gmail.com sina.bock@stud-mail.uni-wuerzburg.de [Set GitHub commit status (universal)] PENDING on repos [GHRepository@402ae5d8[description=<null>,homepage=<null>,name=Topics,license=<null>,fork=true,size=21659,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:0d2f540) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/0d2f5407be9d9538020a66c5062cc4bacc636310 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE [BFA] Scanning build for known causes... [BFA] Found failure cause(s): [BFA] Jupyter Setup Problem [BFA] Done. 0s