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Started by GitHub push by sinabock Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 6048070ec3ae22f04ea65efd489702b36f003ef8 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 6048070ec3ae22f04ea65efd489702b36f003ef8 > git rev-list 9befa738ddf6e1c47f4e777d79812e41f11081c9 # timeout=10 [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda8932044590605178082.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Requirement already up-to-date: nose in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 2)) Requirement already up-to-date: nosexcover in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 3)) Requirement already up-to-date: jupyter in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from -r requirements-dev.txt (line 4)) Requirement already up-to-date: pandas>=0.19.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: regex>=2017.01.14 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: gensim>=0.13.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: matplotlib==1.5.3 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: numpy>=1.3 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: scipy>=0.7 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: werkzeug>=0.11.15 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: flask>=0.11.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pyLDAvis>=2.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: coverage>=3.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nosexcover->-r requirements-dev.txt (line 3)) Requirement already up-to-date: qtconsole in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipykernel in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jupyter-console in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipywidgets in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: nbconvert in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: notebook in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: python-dateutil>=2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pytz>=2011k in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: smart-open>=1.2.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: cycler in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: Jinja2>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: click>=2.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: itsdangerous>=0.21 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pytest in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: funcy in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: numexpr in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: future in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: joblib>=0.8.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pygments in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jupyter-client>=4.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: traitlets in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jupyter-core in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from qtconsole->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipython>=4.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: tornado>=4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: prompt-toolkit<2.0.0,>=1.0.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: widgetsnbextension>=1.2.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: nbformat in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: mistune!=0.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: bleach in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: entrypoints>=0.2.2 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pandocfilters>=1.4.1 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: testpath in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: terminado>=0.3.3; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from notebook->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: boto>=2.32 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: bz2file in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: requests in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: py>=1.4.29 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pyzmq>=13 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from jupyter-client>=4.1->qtconsole->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: decorator in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from traitlets->qtconsole->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pexpect; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: ptyprocess in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Installing collected packages: dariah-topics Found existing installation: dariah-topics 0.2.0.dev0 Uninstalling dariah-topics-0.2.0.dev0: Successfully uninstalled dariah-topics-0.2.0.dev0 Running setup.py develop for dariah-topics Successfully installed dariah-topics + ./setup.py sdist bdist_wheel running sdist running egg_info writing dariah_topics.egg-info/PKG-INFO writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing top-level names to dariah_topics.egg-info/top_level.txt writing requirements to dariah_topics.egg-info/requires.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:333: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0' normalized_version, warning: sdist: standard file not found: should have one of README, README.rst, README.txt running check warning: check: missing required meta-data: url creating dariah_topics-0.2.0.dev0 creating dariah_topics-0.2.0.dev0/dariah_topics creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying files to dariah_topics-0.2.0.dev0... copying setup.cfg -> dariah_topics-0.2.0.dev0 copying setup.py -> dariah_topics-0.2.0.dev0 copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/testing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info Writing dariah_topics-0.2.0.dev0/setup.cfg Creating tar archive removing 'dariah_topics-0.2.0.dev0' (and everything under it) running bdist_wheel running build running build_py copying dariah_topics/mallet.py -> build/lib/dariah_topics installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL + nosetests /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/funcy/decorators.py:56: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() instead spec = inspect.getargspec(func) .[NbConvertApp] Converting notebook IntegrationTest_v01.ipynb to html [NbConvertApp] Executing notebook with kernel: python3 Traceback (most recent call last): File "/usr/lib/python3.5/runpy.py", line 183, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/usr/lib/python3.5/runpy.py", line 142, in _get_module_details return _get_module_details(pkg_main_name, error) File "/usr/lib/python3.5/runpy.py", line 109, in _get_module_details __import__(pkg_name) File "/usr/lib/python3/dist-packages/ipykernel/__init__.py", line 2, in <module> from .connect import * File "/usr/lib/python3/dist-packages/ipykernel/connect.py", line 14, in <module> from IPython.paths import get_ipython_dir ImportError: No module named 'IPython.paths' Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/jupyter-nbconvert", line 11, in <module> sys.exit(main()) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_core/application.py", line 267, in launch_instance return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/traitlets/config/application.py", line 658, in launch_instance app.start() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 305, in start self.convert_notebooks() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 473, in convert_notebooks self.convert_single_notebook(notebook_filename) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 444, in convert_single_notebook output, resources = self.export_single_notebook(notebook_filename, resources, input_buffer=input_buffer) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/nbconvertapp.py", line 373, in export_single_notebook output, resources = self.exporter.from_filename(notebook_filename, resources=resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 171, in from_filename return self.from_file(f, resources=resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 189, in from_file return self.from_notebook_node(nbformat.read(file_stream, as_version=4), resources=resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/html.py", line 69, in from_notebook_node return super(HTMLExporter, self).from_notebook_node(nb, resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/templateexporter.py", line 236, in from_notebook_node nb_copy, resources = super(TemplateExporter, self).from_notebook_node(nb, resources, **kw) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 131, in from_notebook_node nb_copy, resources = self._preprocess(nb_copy, resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/exporters/exporter.py", line 308, in _preprocess nbc, resc = preprocessor(nbc, resc) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/base.py", line 47, in __call__ return self.preprocess(nb,resources) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 207, in preprocess cwd=path) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nbconvert/preprocessors/execute.py", line 192, in start_new_kernel kc.wait_for_ready(timeout=startup_timeout) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/jupyter_client/blocking/client.py", line 59, in wait_for_ready raise RuntimeError('Kernel died before replying to kernel_info') RuntimeError: Kernel died before replying to kernel_info EE.. ====================================================================== ERROR: Failure: ImportError (No module named 'preprocessing') ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/imp.py", line 234, in load_module return load_source(name, filename, file) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/imp.py", line 172, in load_source module = _load(spec) File "<frozen importlib._bootstrap>", line 693, in _load File "<frozen importlib._bootstrap>", line 673, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 673, in exec_module File "<frozen importlib._bootstrap>", line 222, in _call_with_frames_removed File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/testing.py", line 1, in <module> import preprocessing ImportError: No module named 'preprocessing' ====================================================================== ERROR: Tries to run the integration test notebook using jupyter. ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 11, in jupyter_integration_test "IntegrationTest_v01.ipynb"]) File "/usr/lib/python3.5/subprocess.py", line 271, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', 'IntegrationTest_v01.ipynb']' returned non-zero exit status 1 Name Stmts Miss Cover ----------------------------------------------------- dariah_topics.py 0 0 100% dariah_topics/mallet.py 77 59 23% dariah_topics/model_creation.py 60 43 28% dariah_topics/preprocessing.py 122 73 40% dariah_topics/visualization.py 113 89 21% ----------------------------------------------------- TOTAL 372 264 29% ---------------------------------------------------------------------- Ran 5 tests in 4.107s FAILED (errors=2) Build step 'Virtualenv Builder' marked build as failure Recording test results Skipping Cobertura coverage report as build was not UNSTABLE or better ... Sending e-mails to: cyberpillip@gmail.com sina.bock@stud-mail.uni-wuerzburg.de [Set GitHub commit status (universal)] PENDING on repos [GHRepository@354cb855[description=<null>,homepage=<null>,name=Topics,license=<null>,fork=true,size=20758,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:6048070) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/6048070ec3ae22f04ea65efd489702b36f003ef8 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE [BFA] Scanning build for known causes... [BFA] Found failure cause(s): [BFA] Jupyter Setup Problem [BFA] Done. 0s