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Started by GitHub push by severinsimmler Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 4067394a06b5c87202e0530ca1f8fbf8e1fe37ce (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 4067394a06b5c87202e0530ca1f8fbf8e1fe37ce > git rev-list d2a6f7490c740e4291ab611c799354f6b17594bd # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda2827826656759540712.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pandas-0.19.2-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting matplotlib==1.5.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached matplotlib-1.5.3-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached numpy-1.12.0-cp35-cp35m-manylinux1_x86_64.whl Collecting scipy>=0.7 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached scipy-0.18.1-cp35-cp35m-manylinux1_x86_64.whl Collecting werkzeug>=0.11.15 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Werkzeug-0.11.15-py2.py3-none-any.whl Collecting flask>=0.11.1 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Flask-0.12-py2.py3-none-any.whl Collecting wikipedia>=1.4.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting lxml>=3.6.4 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached lxml-3.7.2-cp35-cp35m-manylinux1_x86_64.whl Collecting pyLDAvis>=2.0.0 (from dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.3.4-cp35-cp35m-manylinux1_x86_64.whl Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipykernel-4.5.2-py2.py3-none-any.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipywidgets-5.2.2-py2.py3-none-any.whl Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Using cached nbconvert-5.1.1-py2.py3-none-any.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Using cached qtconsole-4.2.1-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_console-5.1.0-py2.py3-none-any.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Using cached notebook-4.4.1-py2.py3-none-any.whl Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.0-py2.py3-none-any.whl Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pytz-2016.10-py2.py3-none-any.whl Requirement already up-to-date: six>=1.5.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting cycler (from matplotlib==1.5.3->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting Jinja2>=2.4 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached Jinja2-2.9.5-py2.py3-none-any.whl Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting beautifulsoup4 (from wikipedia>=1.4.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached beautifulsoup4-4.5.3-py3-none-any.whl Collecting requests<3.0.0,>=2.0.0 (from wikipedia>=1.4.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached requests-2.13.0-py2.py3-none-any.whl Requirement already up-to-date: wheel>=0.23.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting future (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting pytest (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached pytest-3.0.6-py2.py3-none-any.whl Collecting funcy (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting numexpr (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached numexpr-2.6.2-cp35-cp35m-manylinux1_x86_64.whl Collecting joblib>=0.8.4 (from pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached joblib-0.10.3-py2.py3-none-any.whl Collecting ipython>=4.0.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython-5.2.2-py3-none-any.whl Collecting tornado>=4.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Collecting jupyter-client (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_client-4.4.0-py2.py3-none-any.whl Collecting traitlets>=4.1.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached traitlets-4.3.1-py2.py3-none-any.whl Collecting widgetsnbextension>=1.2.6 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Using cached widgetsnbextension-1.2.6-py2.py3-none-any.whl Collecting jupyter-core (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_core-4.3.0-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting nbformat (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached nbformat-4.2.0-py2.py3-none-any.whl Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached testpath-0.3-py2.py3-none-any.whl Collecting pygments (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached bleach-1.5.0-py2.py3-none-any.whl Collecting mistune!=0.6 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached mistune-0.7.3-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached entrypoints-0.2.2-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached prompt_toolkit-1.0.13-py3-none-any.whl Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython_genutils-0.1.0-py2.py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached boto-2.45.0-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->flask>=0.11.1->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Collecting py>=1.4.29 (from pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Using cached py-1.4.32-py2.py3-none-any.whl Collecting decorator (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached decorator-4.0.11-py2.py3-none-any.whl Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pexpect-4.2.1-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Collecting pickleshare (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ptyprocess-0.5.1-py2.py3-none-any.whl Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from setuptools->pytest->pyLDAvis>=2.0.0->dariah-topics==0.2.0.dev0->-r requirements.txt (line 1)) Installing collected packages: nose, coverage, nosexcover, decorator, ipython-genutils, traitlets, ptyprocess, pexpect, simplegeneric, pygments, wcwidth, prompt-toolkit, pickleshare, ipython, tornado, jupyter-core, pyzmq, jupyter-client, ipykernel, pandocfilters, jsonschema, nbformat, testpath, html5lib, bleach, mistune, MarkupSafe, Jinja2, entrypoints, nbconvert, terminado, notebook, widgetsnbextension, ipywidgets, qtconsole, jupyter-console, jupyter, numpy, python-dateutil, pytz, pandas, regex, scipy, requests, bz2file, boto, smart-open, gensim, cycler, matplotlib, werkzeug, itsdangerous, click, flask, beautifulsoup4, wikipedia, lxml, future, py, pytest, funcy, numexpr, joblib, pyLDAvis, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.9.5 MarkupSafe-0.23 beautifulsoup4-4.5.3 bleach-1.5.0 boto-2.45.0 bz2file-0.98 click-6.7 coverage-4.3.4 cycler-0.10.0 dariah-topics decorator-4.0.11 entrypoints-0.2.2 flask-0.12 funcy-1.7.3 future-0.16.0 gensim-0.13.4.1 html5lib-0.9999999 ipykernel-4.5.2 ipython-5.2.2 ipython-genutils-0.1.0 ipywidgets-5.2.2 itsdangerous-0.24 joblib-0.10.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-4.4.0 jupyter-console-5.1.0 jupyter-core-4.3.0 lxml-3.7.2 matplotlib-1.5.3 mistune-0.7.3 nbconvert-5.1.1 nbformat-4.2.0 nose-1.3.7 nosexcover-1.0.11 notebook-4.4.1 numexpr-2.6.2 numpy-1.12.0 pandas-0.19.2 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.13 ptyprocess-0.5.1 py-1.4.32 pyLDAvis-2.1.1 pygments-2.2.0 pytest-3.0.6 python-dateutil-2.6.0 pytz-2016.10 pyzmq-16.0.2 qtconsole-4.2.1 regex-2017.2.8 requests-2.13.0 scipy-0.18.1 simplegeneric-0.8.1 smart-open-1.4.0 terminado-0.6 testpath-0.3 tornado-4.4.2 traitlets-4.3.1 wcwidth-0.1.7 werkzeug-0.11.15 widgetsnbextension-1.2.6 wikipedia-1.4.0 + ./setup.py sdist bdist_wheel running sdist running egg_info writing requirements to dariah_topics.egg-info/requires.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing top-level names to dariah_topics.egg-info/top_level.txt writing dariah_topics.egg-info/PKG-INFO reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:333: UserWarning: Normalizing '0.2.0dev0' to '0.2.0.dev0' normalized_version, warning: sdist: standard file not found: should have one of README, README.rst, README.txt running check warning: check: missing required meta-data: url creating dariah_topics-0.2.0.dev0 creating dariah_topics-0.2.0.dev0/dariah_topics creating dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying files to dariah_topics-0.2.0.dev0... copying setup.cfg -> dariah_topics-0.2.0.dev0 copying setup.py -> dariah_topics-0.2.0.dev0 copying dariah_topics/__init__.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/model_creation.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.2.0.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.2.0.dev0/dariah_topics.egg-info Writing dariah_topics-0.2.0.dev0/setup.cfg Creating tar archive removing 'dariah_topics-0.2.0.dev0' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/testing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.2.0.dev0.dist-info/WHEEL + nosetests .EE.. ====================================================================== ERROR: Failure: RuntimeError (Working outside of request context. This typically means that you attempted to use functionality that needed an active HTTP request. Consult the documentation on testing for information about how to avoid this problem.) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/plugins/manager.py", line 154, in generate for r in result: File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/plugins/doctests.py", line 228, in loadTestsFromModule tests = self.finder.find(module) File "/usr/lib/python3.5/doctest.py", line 924, in find self._find(tests, obj, name, module, source_lines, globs, {}) File "/usr/lib/python3.5/doctest.py", line 983, in _find if ((inspect.isroutine(inspect.unwrap(val)) File "/usr/lib/python3.5/inspect.py", line 470, in unwrap while _is_wrapper(func): File "/usr/lib/python3.5/inspect.py", line 464, in _is_wrapper return hasattr(f, '__wrapped__') File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/local.py", line 343, in __getattr__ return getattr(self._get_current_object(), name) File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/werkzeug/local.py", line 302, in _get_current_object return self.__local() File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/flask/globals.py", line 37, in _lookup_req_object raise RuntimeError(_request_ctx_err_msg) RuntimeError: Working outside of request context. This typically means that you attempted to use functionality that needed an active HTTP request. Consult the documentation on testing for information about how to avoid this problem. ====================================================================== ERROR: Integration test notebook (via Jupyter) ---------------------------------------------------------------------- Traceback (most recent call last): File "/mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/mnt/data/jenkins/workspace/DARIAH-Topics/test/integration_test.py", line 20, in jupyter_integration_test stderr=STDOUT, universal_newlines=True) File "/usr/lib/python3.5/subprocess.py", line 316, in check_output **kwargs).stdout File "/usr/lib/python3.5/subprocess.py", line 398, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['jupyter-nbconvert', '--execute', '--log-level=ERROR', '--ExecutePreprocessor.iopub_timeout=30', '--ExecutePreprocessor.timeout=None', '/mnt/data/jenkins/workspace/DARIAH-Topics/IntegrationTest_v01.ipynb']' returned non-zero exit status 1 -------------------- >> begin captured logging << -------------------- root: ERROR: An error occurred while executing the following cell: ------------------ #num_docs = max(sparse_bow.index.get_level_values("doc_id")) #num_types = max(sparse_bow.index.get_level_values("token_id")) #sum_counts = sum(sparse_bow[0]) #header_string = str(num_docs) + " " + str(num_types) + " " + str(sum_counts) + "\n" #with open("gb_plain.mm", 'w', encoding = "utf-8") as f: # pass #with open("gb_plain.mm", 'a', encoding = "utf-8") as f: # f.write("%%MatrixMarket matrix coordinate real general\n") # f.write(header_string) # sparse_bow.to_csv( f, sep = ' ', header = None) pre.save_bow_mm(sparse_bow) ------------------ TypeError: save_bow_mm() missing 1 required positional argument: 'output_path' --------------------- >> end captured logging << --------------------- Name Stmts Miss Cover ----------------------------------------------------- dariah_topics.py 0 0 100% dariah_topics/evaluation.py 100 75 25% dariah_topics/mallet.py 133 105 21% dariah_topics/model_creation.py 60 43 28% dariah_topics/preprocessing.py 150 63 58% dariah_topics/visualization.py 146 119 18% ----------------------------------------------------- TOTAL 589 405 31% ---------------------------------------------------------------------- Ran 5 tests in 6.217s FAILED (errors=2) Build step 'Virtualenv Builder' marked build as failure Recording test results Skipping Cobertura coverage report as build was not UNSTABLE or better ... [Set GitHub commit status (universal)] ERROR on repos [GHRepository@5751077a[description=<null>,homepage=<null>,name=Topics,license=<null>,fork=true,size=31530,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:4067394) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/4067394a06b5c87202e0530ca1f8fbf8e1fe37ce [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE