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Started by GitHub push by thvitt Running as SYSTEM Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/pydelta-next The recommended git tool is: NONE using credential Github Cloning the remote Git repository Cloning repository https://github.com/cophi-wue/pydelta > /usr/bin/git init /mnt/data/jenkins/workspace/pydelta-next # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta > /usr/bin/git --version # timeout=10 > git --version # 'git version 2.11.0' using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress -- https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* # timeout=10 > /usr/bin/git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > /usr/bin/git rev-parse refs/remotes/origin/next^{commit} # timeout=10 Checking out Revision 4f21ac5a68495e172f8cdf7a6d95cb30facc653a (refs/remotes/origin/next) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 4f21ac5a68495e172f8cdf7a6d95cb30facc653a # timeout=10 Commit message: "added pytest-cov to dev dependencies" > /usr/bin/git rev-list --no-walk 31bf8a717e18d0106e7e4b0b6932fb3404594ac0 # timeout=10 [Checks API] No suitable checks publisher found. No emails were triggered. [pydelta-next] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python Installing setuptools, pip, wheel...done. [pydelta-next] $ /bin/sh -xe /tmp/shiningpanda288186213305979749.sh + pip install -U pip DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (20.2.3) + pip install -U numpy scipy Cython DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. Collecting numpy Using cached numpy-1.18.5-cp35-cp35m-manylinux1_x86_64.whl (19.9 MB) Collecting scipy Using cached scipy-1.4.1-cp35-cp35m-manylinux1_x86_64.whl (26.0 MB) Collecting Cython Using cached Cython-0.29.21-cp35-cp35m-manylinux1_x86_64.whl (1.9 MB) Installing collected packages: numpy, scipy, Cython Successfully installed Cython-0.29.21 numpy-1.18.5 scipy-1.4.1 + pip install -U -r requirements.txt DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Requirement already up-to-date: Cython in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 3)) (0.29.21) Collecting pytest Using cached pytest-6.1.1-py3-none-any.whl (272 kB) Collecting pytest-cov Downloading pytest_cov-2.10.1-py2.py3-none-any.whl (19 kB) Collecting Sphinx Using cached Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting ipykernel Using cached ipykernel-5.3.4-py3-none-any.whl (120 kB) Collecting nbsphinx Using cached nbsphinx-0.7.1-py3-none-any.whl (24 kB) Requirement already satisfied, skipping upgrade: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) (1.4.1) Collecting matplotlib>=1.3.1 Using cached matplotlib-3.0.3-cp35-cp35m-manylinux1_x86_64.whl (13.0 MB) Requirement already satisfied, skipping upgrade: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) (1.18.5) Collecting pandas>=0.13.1 Using cached pandas-0.25.3-cp35-cp35m-manylinux1_x86_64.whl (10.3 MB) Collecting scikit-learn>=0.16.0 Using cached scikit_learn-0.22.2.post1-cp35-cp35m-manylinux1_x86_64.whl (7.0 MB) Collecting regex Downloading regex-2020.10.11.tar.gz (690 kB) Collecting toml Using cached toml-0.10.1-py2.py3-none-any.whl (19 kB) Collecting importlib-metadata>=0.12; python_version < "3.8" Using cached importlib_metadata-2.0.0-py2.py3-none-any.whl (31 kB) Collecting pathlib2>=2.2.0; python_version < "3.6" Using cached pathlib2-2.3.5-py2.py3-none-any.whl (18 kB) Collecting attrs>=17.4.0 Using cached attrs-20.2.0-py2.py3-none-any.whl (48 kB) Collecting iniconfig Using cached iniconfig-1.0.1-py3-none-any.whl (4.2 kB) Collecting py>=1.8.2 Using cached py-1.9.0-py2.py3-none-any.whl (99 kB) Collecting packaging Using cached packaging-20.4-py2.py3-none-any.whl (37 kB) Collecting pluggy<1.0,>=0.12 Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting coverage>=4.4 Downloading coverage-5.3-cp35-cp35m-manylinux1_x86_64.whl (229 kB) Collecting sphinxcontrib-devhelp Using cached sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting Pygments>=2.0 Using cached Pygments-2.7.1-py3-none-any.whl (944 kB) Collecting Jinja2>=2.3 Using cached Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting sphinxcontrib-applehelp Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting alabaster<0.8,>=0.7 Using cached alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting snowballstemmer>=1.1 Using cached snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-jsmath Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied, skipping upgrade: setuptools in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) (50.3.0) Collecting docutils>=0.12 Using cached docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting requests>=2.5.0 Using cached requests-2.24.0-py2.py3-none-any.whl (61 kB) Collecting babel>=1.3 Using cached Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting sphinxcontrib-htmlhelp Using cached sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB) Collecting sphinxcontrib-serializinghtml Using cached sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Collecting sphinxcontrib-qthelp Using cached sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Collecting imagesize Using cached imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Processing /mnt/data/jenkins/.cache/pip/wheels/68/3c/1e/fd5ff3580fd107e6785d42a2d7e690396d1cefa44813561c29/tornado-6.0.4-cp35-cp35m-linux_x86_64.whl Collecting traitlets>=4.1.0 Using cached traitlets-4.3.3-py2.py3-none-any.whl (75 kB) Collecting ipython>=5.0.0 Using cached ipython-7.9.0-py3-none-any.whl (775 kB) Collecting jupyter-client Using cached jupyter_client-6.1.7-py3-none-any.whl (108 kB) Collecting nbconvert!=5.4 Using cached nbconvert-5.6.1-py2.py3-none-any.whl (455 kB) Collecting nbformat Using cached nbformat-5.0.7-py3-none-any.whl (170 kB) Collecting cycler>=0.10 Using cached cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Collecting python-dateutil>=2.1 Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB) Collecting kiwisolver>=1.0.1 Using cached kiwisolver-1.1.0-cp35-cp35m-manylinux1_x86_64.whl (90 kB) Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 Using cached pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting pytz>=2017.2 Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting joblib>=0.11 Using cached joblib-0.14.1-py2.py3-none-any.whl (294 kB) Collecting zipp>=0.5 Using cached zipp-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six Using cached six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting MarkupSafe>=0.23 Using cached MarkupSafe-1.1.1-cp35-cp35m-manylinux1_x86_64.whl (27 kB) Collecting chardet<4,>=3.0.2 Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Using cached idna-2.10-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Using cached certifi-2020.6.20-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Using cached urllib3-1.25.10-py2.py3-none-any.whl (127 kB) Collecting decorator Using cached decorator-4.4.2-py2.py3-none-any.whl (9.2 kB) Collecting ipython-genutils Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB) Collecting pickleshare Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting jedi>=0.10 Using cached jedi-0.17.2-py2.py3-none-any.whl (1.4 MB) Collecting pexpect; sys_platform != "win32" Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB) Collecting backcall Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting prompt-toolkit<2.1.0,>=2.0.0 Using cached prompt_toolkit-2.0.10-py3-none-any.whl (340 kB) Collecting pyzmq>=13 Using cached pyzmq-19.0.2-cp35-cp35m-manylinux1_x86_64.whl (1.0 MB) Collecting jupyter-core>=4.6.0 Using cached jupyter_core-4.6.3-py2.py3-none-any.whl (83 kB) Processing /mnt/data/jenkins/.cache/pip/wheels/39/01/56/f1b08a6275acc59e846fa4c1e1b65dbc1919f20157d9e66c20/pandocfilters-1.4.2-cp35-none-any.whl Collecting testpath Using cached testpath-0.4.4-py2.py3-none-any.whl (163 kB) Collecting mistune<2,>=0.8.1 Using cached mistune-0.8.4-py2.py3-none-any.whl (16 kB) Collecting entrypoints>=0.2.2 Using cached entrypoints-0.3-py2.py3-none-any.whl (11 kB) Collecting bleach Using cached bleach-3.2.1-py2.py3-none-any.whl (145 kB) Collecting defusedxml Using cached defusedxml-0.6.0-py2.py3-none-any.whl (23 kB) Collecting jsonschema!=2.5.0,>=2.4 Using cached jsonschema-3.2.0-py2.py3-none-any.whl (56 kB) Collecting parso<0.8.0,>=0.7.0 Using cached parso-0.7.1-py2.py3-none-any.whl (109 kB) Collecting ptyprocess>=0.5 Using cached ptyprocess-0.6.0-py2.py3-none-any.whl (39 kB) Collecting wcwidth Using cached wcwidth-0.2.5-py2.py3-none-any.whl (30 kB) Collecting webencodings Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Processing /mnt/data/jenkins/.cache/pip/wheels/6e/ce/d7/a149c2d007203e74294d9d641ea6a6504a3d71a0540790e452/pyrsistent-0.17.3-cp35-cp35m-linux_x86_64.whl Building wheels for collected packages: regex Building wheel for regex (setup.py): started Building wheel for regex (setup.py): finished with status 'done' Created wheel for regex: filename=regex-2020.10.11-cp35-cp35m-linux_x86_64.whl size=581654 sha256=5f822bba63ad842ca91bc5be75624d712b4ff906bef79dd9f3956a7f3bc069c4 Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/88/23/d7/8ae9436390fffeb67f5b623a6968c84ead7facd4b70f0e8f57 Successfully built regex Installing collected packages: toml, zipp, importlib-metadata, six, pathlib2, attrs, iniconfig, py, pyparsing, packaging, pluggy, pytest, coverage, pytest-cov, sphinxcontrib-devhelp, Pygments, MarkupSafe, Jinja2, sphinxcontrib-applehelp, alabaster, snowballstemmer, sphinxcontrib-jsmath, docutils, chardet, idna, certifi, urllib3, requests, pytz, babel, sphinxcontrib-htmlhelp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, imagesize, Sphinx, tornado, decorator, ipython-genutils, traitlets, pickleshare, parso, jedi, ptyprocess, pexpect, backcall, wcwidth, prompt-toolkit, ipython, pyzmq, python-dateutil, jupyter-core, jupyter-client, ipykernel, pandocfilters, testpath, pyrsistent, jsonschema, nbformat, mistune, entrypoints, webencodings, bleach, defusedxml, nbconvert, nbsphinx, cycler, kiwisolver, matplotlib, pandas, joblib, scikit-learn, regex, delta Running setup.py develop for delta Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.1 Sphinx-3.2.1 alabaster-0.7.12 attrs-20.2.0 babel-2.8.0 backcall-0.2.0 bleach-3.2.1 certifi-2020.6.20 chardet-3.0.4 coverage-5.3 cycler-0.10.0 decorator-4.4.2 defusedxml-0.6.0 delta docutils-0.16 entrypoints-0.3 idna-2.10 imagesize-1.2.0 importlib-metadata-2.0.0 iniconfig-1.0.1 ipykernel-5.3.4 ipython-7.9.0 ipython-genutils-0.2.0 jedi-0.17.2 joblib-0.14.1 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.6.3 kiwisolver-1.1.0 matplotlib-3.0.3 mistune-0.8.4 nbconvert-5.6.1 nbformat-5.0.7 nbsphinx-0.7.1 packaging-20.4 pandas-0.25.3 pandocfilters-1.4.2 parso-0.7.1 pathlib2-2.3.5 pexpect-4.8.0 pickleshare-0.7.5 pluggy-0.13.1 prompt-toolkit-2.0.10 ptyprocess-0.6.0 py-1.9.0 pyparsing-2.4.7 pyrsistent-0.17.3 pytest-6.1.1 pytest-cov-2.10.1 python-dateutil-2.8.1 pytz-2020.1 pyzmq-19.0.2 regex-2020.10.11 requests-2.24.0 scikit-learn-0.22.2.post1 six-1.15.0 snowballstemmer-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4 testpath-0.4.4 toml-0.10.1 tornado-6.0.4 traitlets-4.3.3 urllib3-1.25.10 wcwidth-0.2.5 webencodings-0.5.1 zipp-1.2.0 + ./setup.py sdist bdist running sdist running egg_info writing top-level names to delta.egg-info/top_level.txt writing delta.egg-info/PKG-INFO writing requirements to delta.egg-info/requires.txt writing dependency_links to delta.egg-info/dependency_links.txt reading manifest file 'delta.egg-info/SOURCES.txt' writing manifest file 'delta.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url warning: check: missing meta-data: if 'author' supplied, 'author_email' must be supplied too creating delta-2.0.0.dev1 creating delta-2.0.0.dev1/delta creating delta-2.0.0.dev1/delta.egg-info creating delta-2.0.0.dev1/test copying files to delta-2.0.0.dev1... copying README.rst -> delta-2.0.0.dev1 copying setup.cfg -> delta-2.0.0.dev1 copying setup.py -> delta-2.0.0.dev1 copying delta/__init__.py -> delta-2.0.0.dev1/delta copying delta/cluster.py -> delta-2.0.0.dev1/delta copying delta/corpus.py -> delta-2.0.0.dev1/delta copying delta/deltas.py -> delta-2.0.0.dev1/delta copying delta/experiments.py -> delta-2.0.0.dev1/delta copying delta/features.py -> delta-2.0.0.dev1/delta copying delta/graphics.py -> delta-2.0.0.dev1/delta copying delta/util.py -> delta-2.0.0.dev1/delta copying delta.egg-info/PKG-INFO -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/SOURCES.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/dependency_links.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/requires.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/top_level.txt -> delta-2.0.0.dev1/delta.egg-info copying test/test_issue6.py -> delta-2.0.0.dev1/test Writing delta-2.0.0.dev1/setup.cfg creating dist Creating tar archive removing 'delta-2.0.0.dev1' (and everything under it) running bdist running bdist_dumb running build running build_py creating build creating build/lib creating build/lib/delta copying delta/features.py -> build/lib/delta copying delta/graphics.py -> build/lib/delta copying delta/experiments.py -> build/lib/delta copying delta/corpus.py -> build/lib/delta copying delta/cluster.py -> build/lib/delta copying delta/util.py -> build/lib/delta copying delta/deltas.py -> build/lib/delta copying delta/__init__.py -> build/lib/delta installing to build/bdist.linux-x86_64/dumb running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/dumb creating build/bdist.linux-x86_64/dumb/mnt creating build/bdist.linux-x86_64/dumb/mnt/data creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/features.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/graphics.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/experiments.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/corpus.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/cluster.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/util.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/deltas.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/__init__.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/features.py to features.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/graphics.py to graphics.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/experiments.py to experiments.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/corpus.py to corpus.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/cluster.py to cluster.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/util.py to util.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/deltas.py to deltas.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/__init__.py to __init__.cpython-35.pyc running install_egg_info Copying delta.egg-info to build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta-2.0.0.dev1-py3.5.egg-info running install_scripts Creating tar archive removing 'build/bdist.linux-x86_64/dumb' (and everything under it) + ./setup.py build_sphinx running build_sphinx Running Sphinx v3.2.1 making output directory... done WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from http://docs.python.org/objects.inv... loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv intersphinx inventory has moved: http://pandas.pydata.org/pandas-docs/stable/objects.inv -> https://pandas.pydata.org/pandas-docs/stable/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] CustomizingPipeline reading sources... [ 22%] GettingStarted reading sources... [ 33%] README reading sources... [ 44%] README-branch reading sources... [ 55%] concept reading sources... [ 66%] delta KMedoids clustering not available. You need a patched scikit-learn, see README.txt reading sources... [ 77%] index reading sources... [ 88%] modules reading sources... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:48: WARNING: File not found: 'delta.html#delta.corpus.Corpus' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.relative_frequencies' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.get_mfw_table' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:379: WARNING: File not found: 'delta.html#deltas.DistanceMatrix' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#graph.Dendrogram' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#corpus.DocumentDescriber' /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: WARNING: Unknown interpreted text role "function". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.metadata:3: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:11: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:13: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module". WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7f371e82a588>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7f371e94d730>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.MetricDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7f3713aa7488>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__ /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 11%] CustomizingPipeline writing output... [ 22%] GettingStarted writing output... [ 33%] README writing output... [ 44%] README-branch writing output... [ 55%] concept writing output... [ 66%] delta writing output... [ 77%] index writing output... [ 88%] modules writing output... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: 'any' reference target not found: the :math:`n /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:616: WARNING: undefined label: /delta.rst#cluster.clustering (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:803: WARNING: undefined label: /delta.rst#cluster.flatclustering (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator:1: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:11: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:6: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:16: WARNING: 'any' reference target not found: f /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.PreprocessingDeltaFunction:7: WARNING: 'any' reference target not found: f /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry generating indices... genindex py-modindexdone copying notebooks ... [ 50%] GettingStarted.ipynb copying notebooks ... [100%] CustomizingPipeline.ipynb highlighting module code... [ 20%] delta.cluster highlighting module code... [ 40%] delta.corpus highlighting module code... [ 60%] delta.deltas highlighting module code... [ 80%] delta.graphics highlighting module code... [100%] delta.util writing additional pages... searchdone copying images... [ 33%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png copying images... [ 66%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_11_0.png copying images... [100%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_22_0.png copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 38 warnings. The HTML pages are in build/sphinx/html. + pytest --cov=delta --cov-report=xml:coverage.xml ============================= test session starts ============================== platform linux -- Python 3.5.3, pytest-6.1.1, py-1.9.0, pluggy-0.13.1 rootdir: /mnt/data/jenkins/workspace/pydelta-next, configfile: setup.cfg plugins: cov-2.10.1 collected 22 items delta/util.py ... [ 13%] test/corpus_test.py .....EEEEE [ 59%] test/deltas_test.py EEEEEE [ 86%] test/test_issue6.py EEE [100%] ==================================== ERRORS ==================================== ________________________ ERROR at setup of test_call_fg ________________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _____________________ ERROR at setup of test_corpus_parse ______________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError ______________________ ERROR at setup of test_corpus_mfw _______________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError __________________ ERROR at setup of test_integration_cluster __________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError ____________________ ERROR at setup of test_table_describer ____________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _________ ERROR at setup of test_distance[burrows-0.7538867972199293] __________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _______ ERROR at setup of test_distance[Linear Delta-1149.434663563308] ________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _________ ERROR at setup of test_distance[quadratic-1102.845003724634] _________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError ___________ ERROR at setup of test_distance[eder-0.3703309813454142] ___________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _______ ERROR at setup of test_distance[cosine_delta-0.6156353166442046] _______ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError ___________________ ERROR at setup of test_composite_metric ____________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError ________________________ ERROR at setup of test_issue_6 ________________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _______________________ ERROR at setup of test_dm_zscore _______________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError _____________________ ERROR at setup of test_dm_operation ______________________ @pytest.fixture(scope='session') def testdir() -> str: """ Test directory with 9 texts from 3 authors """ > return os.fspath(Path(__file__).parent / 'corpus3') E AttributeError: module 'os' has no attribute 'fspath' test/conftest.py:21: AttributeError =============================== warnings summary =============================== ../../shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/distutils/__init__.py:4 /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/distutils/__init__.py:4: PendingDeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp delta/__init__.py:35 /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") ../../shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/_pytest/config/__init__.py:1230 /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/_pytest/config/__init__.py:1230: PytestConfigWarning: Unknown config option: nb_diff_ignore self._warn_or_fail_if_strict("Unknown config option: {}\n".format(key)) -- Docs: https://docs.pytest.org/en/stable/warnings.html --- generated xml file: /mnt/data/jenkins/workspace/pydelta-next/pytest.xml ---- ----------- coverage: platform linux, python 3.5.3-final-0 ----------- Coverage XML written to file coverage.xml =========================== short test summary info ============================ ERROR test/corpus_test.py::test_call_fg - AttributeError: module 'os' has no ... ERROR test/corpus_test.py::test_corpus_parse - AttributeError: module 'os' ha... ERROR test/corpus_test.py::test_corpus_mfw - AttributeError: module 'os' has ... ERROR test/corpus_test.py::test_integration_cluster - AttributeError: module ... ERROR test/corpus_test.py::test_table_describer - AttributeError: module 'os'... ERROR test/deltas_test.py::test_distance[burrows-0.7538867972199293] - Attrib... ERROR test/deltas_test.py::test_distance[Linear Delta-1149.434663563308] - At... ERROR test/deltas_test.py::test_distance[quadratic-1102.845003724634] - Attri... ERROR test/deltas_test.py::test_distance[eder-0.3703309813454142] - Attribute... ERROR test/deltas_test.py::test_distance[cosine_delta-0.6156353166442046] - A... ERROR test/deltas_test.py::test_composite_metric - AttributeError: module 'os... ERROR test/test_issue6.py::test_issue_6 - AttributeError: module 'os' has no ... ERROR test/test_issue6.py::test_dm_zscore - AttributeError: module 'os' has n... ERROR test/test_issue6.py::test_dm_operation - AttributeError: module 'os' ha... =================== 8 passed, 3 warnings, 14 errors in 0.34s =================== Build step 'Virtualenv Builder' marked build as failure [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] ERROR on repos [GHRepository@7daf46b1[nodeId=MDEwOlJlcG9zaXRvcnk4NDYzMzk3MQ==,description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,fork=true,archived=false,size=2994,milestones={},language=Jupyter Notebook,commits={},isTemplate=<null>,url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971,nodeId=<null>,createdAt=2017-03-11T08:03:36Z,updatedAt=2020-10-12T14:34:53Z]] (sha:4f21ac5) with context:pydelta-next Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/4f21ac5a68495e172f8cdf7a6d95cb30facc653a Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds [Checks API] No suitable checks publisher found. Notifying upstream projects of job completion Email was triggered for: Failure - Any Sending email for trigger: Failure - Any Sending email to: thorsten.vitt@uni-wuerzburg.de Connection error sending email, retrying once more in 10 seconds... Connection error sending email, retrying once more in 10 seconds... Failed after second try sending email Finished: FAILURE