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Started by user Thorsten Vitt Building remotely on build2 (digibib) in workspace /mnt/data/jenkins/workspace/pydelta-next > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url http://github.com/fotis007/pydelta # timeout=10 Fetching upstream changes from http://github.com/fotis007/pydelta > git --version # timeout=10 > git -c core.askpass=true fetch --tags --progress http://github.com/fotis007/pydelta +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/next^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/next^{commit} # timeout=10 Checking out Revision 9990d6dc8f2bdd87d7efba948e45f4ab557053fc (refs/remotes/origin/next) > git config core.sparsecheckout # timeout=10 > git checkout -f 9990d6dc8f2bdd87d7efba948e45f4ab557053fc > git rev-list d782a2b06a159f40095b3ac06bee4191b6dd44de # timeout=10 No emails were triggered. [pydelta-next] $ /bin/sh -xe /tmp/shiningpanda1593832477758803577.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages + pip install -U numpy scipy Cython Requirement already up-to-date: numpy in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages Collecting scipy Using cached scipy-0.18.0-cp34-cp34m-manylinux1_x86_64.whl Collecting Cython Downloading Cython-0.24.1-cp34-cp34m-manylinux1_x86_64.whl (6.7MB) Installing collected packages: scipy, Cython Successfully installed Cython-0.24.1 scipy-0.18.0 + pip install -U -r requirements.txt Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Collecting scikit_learn from git+https://github.com/terkkila/scikit-learn@kmedoids#egg=scikit_learn (from -r requirements.txt (line 3)) Cloning https://github.com/terkkila/scikit-learn (to kmedoids) to /tmp/pip-build-q3s8nn9g/scikit-learn Collecting nose (from -r requirements.txt (line 5)) Using cached nose-1.3.7-py3-none-any.whl Collecting nose-progressive (from -r requirements.txt (line 6)) Collecting nosexcover (from -r requirements.txt (line 7)) Collecting Sphinx (from -r requirements.txt (line 8)) Using cached Sphinx-1.4.6-py2.py3-none-any.whl Requirement already up-to-date: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting matplotlib>=1.3.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-1.5.2-cp34-cp34m-manylinux1_x86_64.whl Requirement already up-to-date: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting pandas>=0.13.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.18.1-cp34-cp34m-manylinux1_x86_64.whl Collecting regex (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Downloading regex-2016.08.27.tar.gz (598kB) Collecting blessings<2.0,>=1.3 (from nose-progressive->-r requirements.txt (line 6)) Collecting coverage>=3.4 (from nosexcover->-r requirements.txt (line 7)) Collecting alabaster<0.8,>=0.7 (from Sphinx->-r requirements.txt (line 8)) Using cached alabaster-0.7.9-py2.py3-none-any.whl Collecting Jinja2>=2.3 (from Sphinx->-r requirements.txt (line 8)) Using cached Jinja2-2.8-py2.py3-none-any.whl Collecting Pygments>=2.0 (from Sphinx->-r requirements.txt (line 8)) Using cached Pygments-2.1.3-py2.py3-none-any.whl Collecting six>=1.5 (from Sphinx->-r requirements.txt (line 8)) Using cached six-1.10.0-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from Sphinx->-r requirements.txt (line 8)) Using cached Babel-2.3.4-py2.py3-none-any.whl Collecting docutils>=0.11 (from Sphinx->-r requirements.txt (line 8)) Using cached docutils-0.12-py3-none-any.whl Collecting imagesize (from Sphinx->-r requirements.txt (line 8)) Using cached imagesize-0.7.1-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from Sphinx->-r requirements.txt (line 8)) Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl Collecting pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pyparsing-2.1.8-py2.py3-none-any.whl Collecting cycler (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting pytz (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2016.6.1-py2.py3-none-any.whl Collecting python-dateutil (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.5.3-py2.py3-none-any.whl Collecting MarkupSafe (from Jinja2>=2.3->Sphinx->-r requirements.txt (line 8)) Building wheels for collected packages: regex Running setup.py bdist_wheel for regex: started Running setup.py bdist_wheel for regex: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/95/3e/85/3d13f6e2c1309c51e9f11f33df500707ed5e13c4f5f953bc12 Successfully built regex Installing collected packages: scikit-learn, nose, blessings, nose-progressive, coverage, nosexcover, alabaster, MarkupSafe, Jinja2, Pygments, six, pytz, babel, docutils, imagesize, snowballstemmer, Sphinx, pyparsing, cycler, python-dateutil, matplotlib, pandas, regex, delta Running setup.py install for scikit-learn: started Running setup.py install for scikit-learn: still running... Running setup.py install for scikit-learn: still running... Running setup.py install for scikit-learn: finished with status 'done' Running setup.py develop for delta Successfully installed Jinja2-2.8 MarkupSafe-0.23 Pygments-2.1.3 Sphinx-1.4.6 alabaster-0.7.9 babel-2.3.4 blessings-1.6 coverage-4.2 cycler-0.10.0 delta docutils-0.12 imagesize-0.7.1 matplotlib-1.5.2 nose-1.3.7 nose-progressive-1.5.1 nosexcover-1.0.10 pandas-0.18.1 pyparsing-2.1.8 python-dateutil-2.5.3 pytz-2016.6.1 regex-2016.8.27 scikit-learn-0.18.dev0 six-1.10.0 snowballstemmer-1.2.1 + ./setup.py sdist bdist running sdist running egg_info writing top-level names to delta.egg-info/top_level.txt writing dependency_links to delta.egg-info/dependency_links.txt writing requirements to delta.egg-info/requires.txt writing delta.egg-info/PKG-INFO reading manifest file 'delta.egg-info/SOURCES.txt' writing manifest file 'delta.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url warning: check: missing meta-data: if 'author' supplied, 'author_email' must be supplied too creating delta-2.0.0.dev1 creating delta-2.0.0.dev1/delta creating delta-2.0.0.dev1/delta.egg-info making hard links in delta-2.0.0.dev1... hard linking README.rst -> delta-2.0.0.dev1 hard linking setup.cfg -> delta-2.0.0.dev1 hard linking setup.py -> delta-2.0.0.dev1 hard linking delta/__init__.py -> delta-2.0.0.dev1/delta hard linking delta/cluster.py -> delta-2.0.0.dev1/delta hard linking delta/corpus.py -> delta-2.0.0.dev1/delta hard linking delta/deltas.py -> delta-2.0.0.dev1/delta hard linking delta/experiments.py -> delta-2.0.0.dev1/delta hard linking delta/features.py -> delta-2.0.0.dev1/delta hard linking delta/graphics.py -> delta-2.0.0.dev1/delta hard linking delta/util.py -> delta-2.0.0.dev1/delta hard linking delta.egg-info/PKG-INFO -> delta-2.0.0.dev1/delta.egg-info hard linking delta.egg-info/SOURCES.txt -> delta-2.0.0.dev1/delta.egg-info hard linking delta.egg-info/dependency_links.txt -> delta-2.0.0.dev1/delta.egg-info hard linking delta.egg-info/requires.txt -> delta-2.0.0.dev1/delta.egg-info hard linking delta.egg-info/top_level.txt -> delta-2.0.0.dev1/delta.egg-info copying setup.cfg -> delta-2.0.0.dev1 Writing delta-2.0.0.dev1/setup.cfg creating dist Creating tar archive removing 'delta-2.0.0.dev1' (and everything under it) running bdist running bdist_dumb running build running build_py creating build creating build/lib creating build/lib/delta copying delta/util.py -> build/lib/delta copying delta/deltas.py -> build/lib/delta copying delta/corpus.py -> build/lib/delta copying delta/cluster.py -> build/lib/delta copying delta/experiments.py -> build/lib/delta copying delta/features.py -> build/lib/delta copying delta/graphics.py -> build/lib/delta copying delta/__init__.py -> build/lib/delta installing to build/bdist.linux-x86_64/dumb running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/dumb creating build/bdist.linux-x86_64/dumb/mnt creating build/bdist.linux-x86_64/dumb/mnt/data creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/util.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/deltas.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/corpus.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/cluster.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/experiments.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/features.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/graphics.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta copying build/lib/delta/__init__.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/util.py to util.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/deltas.py to deltas.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/corpus.py to corpus.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/cluster.py to cluster.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/experiments.py to experiments.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/features.py to features.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/graphics.py to graphics.cpython-34.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta/__init__.py to __init__.cpython-34.pyc running install_egg_info Copying delta.egg-info to build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/delta-2.0.0.dev1-py3.4.egg-info running install_scripts Creating tar archive removing 'build/bdist.linux-x86_64/dumb' (and everything under it) + ./setup.py build_sphinx running build_sphinx creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/doctrees creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html Running Sphinx v1.4.6 loading pickled environment... not yet created loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/2/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 7 source files that are out of date updating environment: 7 added, 0 changed, 0 removed reading sources... [ 14%] README reading sources... [ 28%] README-branch reading sources... [ 42%] concept reading sources... [ 57%] delta reading sources... [ 71%] index reading sources... [ 85%] modules reading sources... [100%] refactoring-notes /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.4/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: ERROR: Unknown interpreted text role "function". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: ERROR: Unknown interpreted text role "param". /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:8: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:12: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:62: WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7fdb2c3d3400>, <class 'delta.deltas.Normalization'>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <class 'delta.cluster.KMedoidsClustering'>, <function get_rfe_features at 0x7fdb3bd851e0>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__ /mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:13: ERROR: Unknown target name: "facet". /mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:18: ERROR: Unknown target name: "facet". /mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:23: ERROR: Unknown target name: "facet". /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: ERROR: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst:: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst:: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 14%] README writing output... [ 28%] README-branch writing output... [ 42%] concept writing output... [ 57%] delta writing output... [ 71%] index writing output... [ 85%] modules writing output... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:16: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:None: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:None: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:None: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:None: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:None: WARNING: 'any' reference target not found: f generating indices... genindex py-modindex highlighting module code... [ 25%] delta.cluster highlighting module code... [ 50%] delta.corpus highlighting module code... [ 75%] delta.util highlighting module code... [100%] delta.deltas writing additional pages... search copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/pydelta-next/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 28 warnings. + nosetests .................. Name Stmts Miss Cover ------------------------------------------ delta.py 10 0 100% delta/cluster.py 108 16 85% delta/corpus.py 186 67 64% delta/deltas.py 301 102 66% delta/experiments.py 2 0 100% delta/features.py 19 14 26% delta/graphics.py 52 39 25% delta/util.py 108 24 78% ------------------------------------------ TOTAL 786 262 67% ---------------------------------------------------------------------- Ran 18 tests in 14.660s OK [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. Setting commit status on GitHub for https://github.com/fotis007/pydelta/commit/9990d6dc8f2bdd87d7efba948e45f4ab557053fc Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion No emails were triggered. Finished: SUCCESS