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Started by user Thorsten Vitt Running as SYSTEM Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/pydelta-next The recommended git tool is: NONE using credential Github Cloning the remote Git repository Cloning repository https://github.com/cophi-wue/pydelta > /usr/bin/git init /mnt/data/jenkins/workspace/pydelta-next # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta > /usr/bin/git --version # timeout=10 > git --version # 'git version 2.20.1' using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --force --progress -- https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* # timeout=10 > /usr/bin/git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 > /usr/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > /usr/bin/git rev-parse refs/remotes/origin/next^{commit} # timeout=10 Checking out Revision 1a6856e11aac9aab473c39dbf363668f51a594ff (refs/remotes/origin/next) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 1a6856e11aac9aab473c39dbf363668f51a594ff # timeout=10 Commit message: "Allow parallel parsing of corpus files" > /usr/bin/git rev-list --no-walk 1a6856e11aac9aab473c39dbf363668f51a594ff # timeout=10 No emails were triggered. $ bash -c "[ -d \$HOME/.pyenv ]" Installing pyenv... $ bash -c "git clone https://github.com/yyuu/pyenv.git \$HOME/.pyenv && cd \$HOME/.pyenv && git checkout master" Cloning into '/mnt/data/jenkins/.pyenv'... Already on 'master' Your branch is up to date with 'origin/master'. Installed pyenv. $ bash -c "cd /mnt/data/jenkins/workspace/pydelta-next && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true" $ bash -c "mkdir \$HOME/.pyenv.lock" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv versions --bare" Updating pyenv... $ bash -c "cd \$HOME/.pyenv && git checkout master && git pull" Already on 'master' Your branch is up to date with 'origin/master'. Already up to date. Updated pyenv. Installing 3.9.5... $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv install 3.9.5" Downloading Python-3.9.5.tar.xz... -> https://www.python.org/ftp/python/3.9.5/Python-3.9.5.tar.xz Installing Python-3.9.5... WARNING: The Python sqlite3 extension was not compiled. Missing the SQLite3 lib? Installed Python-3.9.5 to /mnt/data/jenkins/.pyenv/versions/3.9.5 Installed 3.9.5. $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv exec pip list" Installing tox... $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv exec pip install tox" Collecting tox Downloading tox-3.23.1-py2.py3-none-any.whl (85 kB) Collecting py>=1.4.17 Downloading py-1.10.0-py2.py3-none-any.whl (97 kB) Collecting packaging>=14 Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting filelock>=3.0.0 Using cached filelock-3.0.12-py3-none-any.whl (7.6 kB) Collecting pluggy>=0.12.0 Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting toml>=0.9.4 Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB) Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0 Downloading virtualenv-20.4.7-py2.py3-none-any.whl (7.2 MB) Collecting six>=1.14.0 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting appdirs<2,>=1.4.3 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting distlib<1,>=0.3.1 Downloading distlib-0.3.2-py2.py3-none-any.whl (338 kB) Installing collected packages: six, pyparsing, filelock, distlib, appdirs, virtualenv, toml, py, pluggy, packaging, tox Successfully installed appdirs-1.4.4 distlib-0.3.2 filelock-3.0.12 packaging-20.9 pluggy-0.13.1 py-1.10.0 pyparsing-2.4.7 six-1.16.0 toml-0.10.2 tox-3.23.1 virtualenv-20.4.7 WARNING: You are using pip version 21.1.1; however, version 21.1.2 is available. You should consider upgrading via the '/mnt/data/jenkins/.pyenv/versions/3.9.5/bin/python3.9 -m pip install --upgrade pip' command. Installed tox. $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "rm -rf \$HOME/.pyenv.lock" [pydelta-next] $ /bin/sh -xe /tmp/jenkins2624422099811718086.sh + pip install -r requirements.txt Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Collecting Cython Downloading Cython-0.29.23-cp39-cp39-manylinux1_x86_64.whl (1.9 MB) Collecting pytest Downloading pytest-6.2.4-py3-none-any.whl (280 kB) Collecting pytest-cov Downloading pytest_cov-2.12.1-py2.py3-none-any.whl (20 kB) Collecting Sphinx Downloading Sphinx-4.0.2-py3-none-any.whl (2.9 MB) Collecting ipykernel Downloading ipykernel-5.5.5-py3-none-any.whl (120 kB) Collecting nbsphinx Downloading nbsphinx-0.8.6-py3-none-any.whl (24 kB) Collecting scipy>=0.14.0 Downloading scipy-1.6.3-cp39-cp39-manylinux1_x86_64.whl (27.3 MB) Collecting matplotlib>=1.3.1 Downloading matplotlib-3.4.2-cp39-cp39-manylinux1_x86_64.whl (10.3 MB) Collecting numpy>=1.8.1 Using cached numpy-1.20.3-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.4 MB) Collecting pandas>=0.13.1 Downloading pandas-1.2.4-cp39-cp39-manylinux1_x86_64.whl (9.7 MB) Collecting scikit-learn>=0.16.0 Downloading scikit_learn-0.24.2-cp39-cp39-manylinux2010_x86_64.whl (23.8 MB) Collecting joblib>=1.0.1 Downloading joblib-1.0.1-py3-none-any.whl (303 kB) Collecting regex Downloading regex-2021.4.4-cp39-cp39-manylinux2014_x86_64.whl (730 kB) Requirement already satisfied: pyparsing>=2.2.1 in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) (2.4.7) Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.3.1-cp39-cp39-manylinux1_x86_64.whl (1.2 MB) Collecting python-dateutil>=2.7 Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB) Collecting cycler>=0.10 Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Collecting pillow>=6.2.0 Downloading Pillow-8.2.0-cp39-cp39-manylinux1_x86_64.whl (3.0 MB) Requirement already satisfied: six in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from cycler>=0.10->matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) (1.16.0) Collecting pytz>=2017.3 Using cached pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-2.1.0-py3-none-any.whl (12 kB) Requirement already satisfied: toml in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (0.10.2) Collecting attrs>=19.2.0 Downloading attrs-21.2.0-py2.py3-none-any.whl (53 kB) Requirement already satisfied: pluggy<1.0.0a1,>=0.12 in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (0.13.1) Requirement already satisfied: packaging in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (20.9) Collecting iniconfig Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Requirement already satisfied: py>=1.8.2 in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (1.10.0) Collecting coverage>=5.2.1 Downloading coverage-5.5-cp39-cp39-manylinux2010_x86_64.whl (243 kB) Requirement already satisfied: setuptools in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from Sphinx->-r requirements.txt (line 10)) (56.0.0) Collecting babel>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting docutils<0.18,>=0.14 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting Pygments>=2.0 Downloading Pygments-2.9.0-py3-none-any.whl (1.0 MB) Collecting alabaster<0.8,>=0.7 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(178 kB) Collecting idna<3,>=2.5 Using cached idna-2.10-py2.py3-none-any.whl (58 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.5-py2.py3-none-any.whl (138 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB) Collecting ipython>=5.0.0 Downloading ipython-7.24.1-py3-none-any.whl (785 kB) Collecting traitlets>=4.1.0 Downloading traitlets-5.0.5-py3-none-any.whl (100 kB) Collecting tornado>=4.2 Downloading tornado-6.1-cp39-cp39-manylinux2010_x86_64.whl (427 kB) Collecting jupyter-client Downloading jupyter_client-6.1.12-py3-none-any.whl (112 kB) Collecting pexpect>4.3 Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB) Collecting decorator Downloading decorator-5.0.9-py3-none-any.whl (8.9 kB) Collecting matplotlib-inline Downloading matplotlib_inline-0.1.2-py3-none-any.whl (8.2 kB) Collecting jedi>=0.16 Downloading jedi-0.18.0-py2.py3-none-any.whl (1.4 MB) Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 Downloading prompt_toolkit-3.0.18-py3-none-any.whl (367 kB) Collecting backcall Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting pickleshare Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting parso<0.9.0,>=0.8.0 Downloading parso-0.8.2-py2.py3-none-any.whl (94 kB) Collecting ptyprocess>=0.5 Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting wcwidth Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB) Collecting ipython-genutils Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB) Collecting nbformat Downloading nbformat-5.1.3-py3-none-any.whl (178 kB) Collecting nbconvert!=5.4 Downloading nbconvert-6.0.7-py3-none-any.whl (552 kB) Collecting testpath Downloading testpath-0.5.0-py3-none-any.whl (84 kB) Collecting jupyter-core Downloading jupyter_core-4.7.1-py3-none-any.whl (82 kB) Collecting entrypoints>=0.2.2 Downloading entrypoints-0.3-py2.py3-none-any.whl (11 kB) Collecting nbclient<0.6.0,>=0.5.0 Downloading 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pandocfilters, since package 'wheel' is not installed. Using legacy 'setup.py install' for pyrsistent, since package 'wheel' is not installed. Installing collected packages: ipython-genutils, traitlets, pyrsistent, attrs, tornado, pyzmq, python-dateutil, jupyter-core, jsonschema, webencodings, wcwidth, urllib3, pytz, Pygments, ptyprocess, parso, numpy, nest-asyncio, nbformat, MarkupSafe, jupyter-client, idna, chardet, certifi, async-generator, threadpoolctl, testpath, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, scipy, requests, prompt-toolkit, pillow, pickleshare, pexpect, pandocfilters, nbclient, mistune, matplotlib-inline, kiwisolver, jupyterlab-pygments, joblib, Jinja2, jedi, iniconfig, imagesize, entrypoints, docutils, defusedxml, decorator, cycler, bleach, backcall, babel, alabaster, Sphinx, scikit-learn, regex, pytest, pandas, nbconvert, matplotlib, ipython, coverage, pytest-cov, nbsphinx, ipykernel, delta, Cython Running setup.py install for pyrsistent: started Running setup.py install for pyrsistent: finished with status 'done' Running setup.py install for pandocfilters: started Running setup.py install for pandocfilters: finished with status 'done' Running setup.py develop for delta Successfully installed Cython-0.29.23 Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.9.0 Sphinx-4.0.2 alabaster-0.7.12 async-generator-1.10 attrs-21.2.0 babel-2.9.1 backcall-0.2.0 bleach-3.3.0 certifi-2021.5.30 chardet-4.0.0 coverage-5.5 cycler-0.10.0 decorator-5.0.9 defusedxml-0.7.1 delta-2.0.0.dev1 docutils-0.17.1 entrypoints-0.3 idna-2.10 imagesize-1.2.0 iniconfig-1.1.1 ipykernel-5.5.5 ipython-7.24.1 ipython-genutils-0.2.0 jedi-0.18.0 joblib-1.0.1 jsonschema-3.2.0 jupyter-client-6.1.12 jupyter-core-4.7.1 jupyterlab-pygments-0.1.2 kiwisolver-1.3.1 matplotlib-3.4.2 matplotlib-inline-0.1.2 mistune-0.8.4 nbclient-0.5.3 nbconvert-6.0.7 nbformat-5.1.3 nbsphinx-0.8.6 nest-asyncio-1.5.1 numpy-1.20.3 pandas-1.2.4 pandocfilters-1.4.3 parso-0.8.2 pexpect-4.8.0 pickleshare-0.7.5 pillow-8.2.0 prompt-toolkit-3.0.18 ptyprocess-0.7.0 pyrsistent-0.17.3 pytest-6.2.4 pytest-cov-2.12.1 python-dateutil-2.8.1 pytz-2021.1 pyzmq-22.1.0 regex-2021.4.4 requests-2.25.1 scikit-learn-0.24.2 scipy-1.6.3 snowballstemmer-2.1.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 testpath-0.5.0 threadpoolctl-2.1.0 tornado-6.1 traitlets-5.0.5 urllib3-1.26.5 wcwidth-0.2.5 webencodings-0.5.1 WARNING: You are using pip version 21.1.1; however, version 21.1.2 is available. You should consider upgrading via the '/mnt/data/jenkins/.pyenv/versions/3.9.5/bin/python3.9 -m pip install --upgrade pip' command. + ./setup.py build_sphinx running build_sphinx Running Sphinx v4.0.2 making output directory... done WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from http://docs.python.org/objects.inv... loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv intersphinx inventory has moved: http://pandas.pydata.org/pandas-docs/stable/objects.inv -> https://pandas.pydata.org/pandas-docs/stable/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] CustomizingPipeline reading sources... [ 22%] GettingStarted reading sources... [ 33%] README reading sources... [ 44%] README-branch reading sources... [ 55%] concept reading sources... [ 66%] delta KMedoids clustering not available. You need a patched scikit-learn, see README.txt /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") reading sources... [ 77%] index reading sources... [ 88%] modules reading sources... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:48: WARNING: File not found: 'delta.html#delta.corpus.Corpus' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.relative_frequencies' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.get_mfw_table' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:379: WARNING: File not found: 'delta.html#deltas.DistanceMatrix' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#graph.Dendrogram' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#corpus.DocumentDescriber' /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: WARNING: Unknown interpreted text role "function". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.metadata:3: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:11: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:13: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module". WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7faa82962820>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7faa82951040>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.MetricDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7faa6375a700>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__ /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 11%] CustomizingPipeline writing output... [ 22%] GettingStarted writing output... [ 33%] README writing output... [ 44%] README-branch writing output... [ 55%] concept writing output... [ 66%] delta writing output... [ 77%] index writing output... [ 88%] modules writing output... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:616: WARNING: undefined label: /delta.rst#cluster.clustering /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:803: WARNING: undefined label: /delta.rst#cluster.flatclustering /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator:1: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:11: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:6: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:16: WARNING: 'any' reference target not found: f /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.PreprocessingDeltaFunction:7: WARNING: 'any' reference target not found: f /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry generating indices... genindex py-modindex done copying notebooks ... [ 50%] CustomizingPipeline.ipynb copying notebooks ... [100%] GettingStarted.ipynb highlighting module code... [ 20%] delta.cluster highlighting module code... [ 40%] delta.corpus highlighting module code... [ 60%] delta.deltas highlighting module code... [ 80%] delta.graphics highlighting module code... [100%] delta.util writing additional pages... search done copying images... [ 33%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_11_0.png copying images... [ 66%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_22_0.png copying images... [100%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 37 warnings. The HTML pages are in build/sphinx/html. + pytest --cov=delta --cov-report=xml:coverage.xml Traceback (most recent call last): File "/mnt/data/jenkins/.pyenv/versions/3.9.5/bin/pytest", line 8, in <module> sys.exit(console_main()) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py", line 185, in console_main code = main() File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py", line 143, in main config = _prepareconfig(args, plugins) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py", line 318, in _prepareconfig config = pluginmanager.hook.pytest_cmdline_parse( File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__ return self._hookexec(self, self.get_hookimpls(), kwargs) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec return self._inner_hookexec(hook, methods, kwargs) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda> self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall( File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/callers.py", line 203, in _multicall gen.send(outcome) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/helpconfig.py", line 100, in pytest_cmdline_parse config: Config = outcome.get_result() File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/callers.py", line 80, in get_result raise ex[1].with_traceback(ex[2]) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall res = hook_impl.function(*args) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py", line 1003, in pytest_cmdline_parse self.parse(args) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py", line 1283, in parse self._preparse(args, addopts=addopts) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py", line 1172, in _preparse self.pluginmanager.load_setuptools_entrypoints("pytest11") File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pluggy/manager.py", line 299, in load_setuptools_entrypoints plugin = ep.load() File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/importlib/metadata.py", line 77, in load module = import_module(match.group('module')) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "<frozen importlib._bootstrap>", line 1030, in _gcd_import File "<frozen importlib._bootstrap>", line 1007, in _find_and_load File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked File "<frozen importlib._bootstrap>", line 680, in _load_unlocked File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/assertion/rewrite.py", line 170, in exec_module exec(co, module.__dict__) File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/pytest_cov/plugin.py", line 6, in <module> import coverage File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/coverage/__init__.py", line 15, in <module> from coverage.control import Coverage, process_startup File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/coverage/control.py", line 21, in <module> from coverage.data import CoverageData, combine_parallel_data File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/coverage/data.py", line 17, in <module> from coverage.sqldata import CoverageData File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/coverage/sqldata.py", line 15, in <module> import sqlite3 File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/sqlite3/__init__.py", line 23, in <module> from sqlite3.dbapi2 import * File "/mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/sqlite3/dbapi2.py", line 27, in <module> from _sqlite3 import * ModuleNotFoundError: No module named '_sqlite3' Build step 'Execute shell' marked build as failure [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results ERROR: Step ‘Publish JUnit test result report’ failed: No test report files were found. Configuration error? [Cobertura] Publishing Cobertura coverage report... [Set GitHub commit status (universal)] ERROR on repos [GHRepository@4927840[nodeId=MDEwOlJlcG9zaXRvcnk4NDYzMzk3MQ==,description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,fork=true,archived=false,size=3005,milestones={},language=Jupyter Notebook,commits={},isTemplate=<null>,url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971,nodeId=<null>,createdAt=2017-03-11T08:03:36Z,updatedAt=2021-06-13T16:30:40Z]] (sha:1a6856e) with context:pydelta-next Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/1a6856e11aac9aab473c39dbf363668f51a594ff Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 1 second Notifying upstream projects of job completion Email was triggered for: Failure - Any Sending email for trigger: Failure - Any An attempt to send an e-mail to empty list of recipients, ignored. Finished: FAILURE