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Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/pydelta-next Cloning the remote Git repository Cloning repository https://github.com/cophi-wue/pydelta > git init /mnt/data/jenkins/workspace/pydelta-next # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/next^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/next^{commit} # timeout=10 Checking out Revision ab56758d3027eb4b893653be2156e9abac6b4834 (refs/remotes/origin/next) > git config core.sparsecheckout # timeout=10 > git checkout -f ab56758d3027eb4b893653be2156e9abac6b4834 > git rev-list c4b7b9dc1cf8fafc49235d0f7a2f8cc793502532 # timeout=10 No emails were triggered. [pydelta-next] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python Installing setuptools, pip, wheel...done. [pydelta-next] $ /bin/sh -xe /tmp/shiningpanda2022161559759518431.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages + pip install -U numpy scipy Cython Collecting numpy Using cached numpy-1.12.1-cp35-cp35m-manylinux1_x86_64.whl Collecting scipy Using cached scipy-0.19.0-cp35-cp35m-manylinux1_x86_64.whl Collecting Cython Downloading Cython-0.25.2-cp35-cp35m-manylinux1_x86_64.whl (7.0MB) Installing collected packages: numpy, scipy, Cython Successfully installed Cython-0.25.2 numpy-1.12.1 scipy-0.19.0 + pip install -U -r requirements.txt Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Collecting scikit_learn from git+https://github.com/Kornel/scikit-learn@tk-kmedoids#egg=scikit_learn (from -r requirements.txt (line 3)) Cloning https://github.com/Kornel/scikit-learn (to tk-kmedoids) to /tmp/pip-build-082a8e_8/scikit-learn Collecting nose (from -r requirements.txt (line 5)) Using cached nose-1.3.7-py3-none-any.whl Collecting nose-progressive (from -r requirements.txt (line 6)) Downloading nose-progressive-1.5.1.tar.gz Collecting nosexcover (from -r requirements.txt (line 7)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting Sphinx (from -r requirements.txt (line 8)) Downloading Sphinx-1.5.5-py2.py3-none-any.whl (1.6MB) Collecting ipykernel (from -r requirements.txt (line 9)) Using cached ipykernel-4.6.0-py3-none-any.whl Collecting nbsphinx (from -r requirements.txt (line 10)) Downloading nbsphinx-0.2.13-py2.py3-none-any.whl Requirement already up-to-date: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting matplotlib>=1.3.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Downloading matplotlib-2.0.0-1-cp35-cp35m-manylinux1_x86_64.whl (14.7MB) Requirement already up-to-date: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting pandas>=0.13.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.19.2-cp35-cp35m-manylinux1_x86_64.whl Collecting regex (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting blessings<2.0,>=1.3 (from nose-progressive->-r requirements.txt (line 6)) Downloading blessings-1.6.tar.gz Collecting coverage>=3.4 (from nosexcover->-r requirements.txt (line 7)) Using cached coverage-4.3.4-cp35-cp35m-manylinux1_x86_64.whl Collecting docutils>=0.11 (from Sphinx->-r requirements.txt (line 8)) Downloading docutils-0.13.1-py3-none-any.whl (536kB) Collecting Jinja2>=2.3 (from Sphinx->-r requirements.txt (line 8)) Using cached Jinja2-2.9.6-py2.py3-none-any.whl Collecting imagesize (from Sphinx->-r requirements.txt (line 8)) Downloading imagesize-0.7.1-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from Sphinx->-r requirements.txt (line 8)) Downloading Babel-2.4.0-py2.py3-none-any.whl (6.8MB) Requirement already up-to-date: six>=1.5 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 8)) Collecting Pygments>=2.0 (from Sphinx->-r requirements.txt (line 8)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from Sphinx->-r requirements.txt (line 8)) Downloading snowballstemmer-1.2.1-py2.py3-none-any.whl (64kB) Collecting alabaster<0.8,>=0.7 (from Sphinx->-r requirements.txt (line 8)) Downloading alabaster-0.7.10-py2.py3-none-any.whl Collecting requests>=2.0.0 (from Sphinx->-r requirements.txt (line 8)) Using cached requests-2.13.0-py2.py3-none-any.whl Collecting tornado>=4.0 (from ipykernel->-r requirements.txt (line 9)) Collecting jupyter-client (from ipykernel->-r requirements.txt (line 9)) Using cached jupyter_client-5.0.1-py2.py3-none-any.whl Collecting ipython>=4.0.0 (from ipykernel->-r requirements.txt (line 9)) Using cached ipython-5.3.0-py3-none-any.whl Collecting traitlets>=4.1.0 (from ipykernel->-r requirements.txt (line 9)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting nbconvert (from nbsphinx->-r requirements.txt (line 10)) Using cached nbconvert-5.1.1-py2.py3-none-any.whl Collecting nbformat (from nbsphinx->-r requirements.txt (line 10)) Using cached nbformat-4.3.0-py2.py3-none-any.whl Collecting python-dateutil (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.0-py2.py3-none-any.whl Collecting pytz (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.2-py2.py3-none-any.whl Collecting cycler>=0.10 (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->Sphinx->-r requirements.txt (line 8)) Collecting pyzmq>=13 (from jupyter-client->ipykernel->-r requirements.txt (line 9)) Using cached pyzmq-16.0.2-cp35-cp35m-manylinux1_x86_64.whl Collecting jupyter-core (from jupyter-client->ipykernel->-r requirements.txt (line 9)) Using cached jupyter_core-4.3.0-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.4 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Using cached prompt_toolkit-1.0.14-py3-none-any.whl Requirement already up-to-date: setuptools>=18.5 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Using cached pexpect-4.2.1-py2.py3-none-any.whl Collecting pickleshare (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting decorator (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Using cached decorator-4.0.11-py2.py3-none-any.whl Collecting ipython-genutils (from traitlets>=4.1.0->ipykernel->-r requirements.txt (line 9)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->nbsphinx->-r requirements.txt (line 10)) Collecting mistune!=0.6 (from nbconvert->nbsphinx->-r requirements.txt (line 10)) Using cached mistune-0.7.4-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->nbsphinx->-r requirements.txt (line 10)) Using cached entrypoints-0.2.2-py2.py3-none-any.whl Collecting bleach (from nbconvert->nbsphinx->-r requirements.txt (line 10)) Using cached bleach-2.0.0-py2.py3-none-any.whl Collecting testpath (from nbconvert->nbsphinx->-r requirements.txt (line 10)) Using cached testpath-0.3-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsphinx->-r requirements.txt (line 10)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.4->ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Requirement already up-to-date: appdirs>=1.4.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from setuptools>=18.5->ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Requirement already up-to-date: packaging>=16.8 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from setuptools>=18.5->ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Collecting ptyprocess>=0.5 (from pexpect; sys_platform != "win32"->ipython>=4.0.0->ipykernel->-r requirements.txt (line 9)) Using cached ptyprocess-0.5.1-py2.py3-none-any.whl Collecting html5lib>=0.99999999 (from bleach->nbconvert->nbsphinx->-r requirements.txt (line 10)) Using cached html5lib-0.999999999-py2.py3-none-any.whl Collecting webencodings (from html5lib>=0.99999999->bleach->nbconvert->nbsphinx->-r requirements.txt (line 10)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Building wheels for collected packages: nose-progressive, blessings Running setup.py bdist_wheel for nose-progressive: started Running setup.py bdist_wheel for nose-progressive: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/c1/b8/ef/bdad52571ca18175f130c2b689e06b99e6b5ce217fd2982ecd Running setup.py bdist_wheel for blessings: started Running setup.py bdist_wheel for blessings: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/a5/7c/ba/e52b14bbd1b8cdeeb0771b03e1cca9b9d438c6e0054144a508 Successfully built nose-progressive blessings Installing collected packages: scikit-learn, nose, blessings, nose-progressive, coverage, nosexcover, docutils, MarkupSafe, Jinja2, imagesize, pytz, babel, Pygments, snowballstemmer, alabaster, requests, Sphinx, tornado, pyzmq, decorator, ipython-genutils, traitlets, jupyter-core, python-dateutil, jupyter-client, wcwidth, prompt-toolkit, simplegeneric, ptyprocess, pexpect, pickleshare, ipython, ipykernel, pandocfilters, mistune, entrypoints, webencodings, html5lib, bleach, jsonschema, nbformat, testpath, nbconvert, nbsphinx, cycler, matplotlib, pandas, regex, delta Running setup.py install for scikit-learn: started Running setup.py install for scikit-learn: still running... Running setup.py install for scikit-learn: finished with status 'done' Running setup.py develop for delta Successfully installed Jinja2-2.9.6 MarkupSafe-1.0 Pygments-2.2.0 Sphinx-1.5.5 alabaster-0.7.10 babel-2.4.0 bleach-2.0.0 blessings-1.6 coverage-4.3.4 cycler-0.10.0 decorator-4.0.11 delta docutils-0.13.1 entrypoints-0.2.2 html5lib-0.999999999 imagesize-0.7.1 ipykernel-4.6.0 ipython-5.3.0 ipython-genutils-0.2.0 jsonschema-2.6.0 jupyter-client-5.0.1 jupyter-core-4.3.0 matplotlib-2.0.0 mistune-0.7.4 nbconvert-5.1.1 nbformat-4.3.0 nbsphinx-0.2.13 nose-1.3.7 nose-progressive-1.5.1 nosexcover-1.0.11 pandas-0.19.2 pandocfilters-1.4.1 pexpect-4.2.1 pickleshare-0.7.4 prompt-toolkit-1.0.14 ptyprocess-0.5.1 python-dateutil-2.6.0 pytz-2017.2 pyzmq-16.0.2 regex-2017.4.5 requests-2.13.0 scikit-learn-0.19.dev0 simplegeneric-0.8.1 snowballstemmer-1.2.1 testpath-0.3 tornado-4.4.3 traitlets-4.3.2 wcwidth-0.1.7 webencodings-0.5.1 + ./setup.py sdist bdist running sdist running egg_info writing requirements to delta.egg-info/requires.txt writing top-level names to delta.egg-info/top_level.txt writing delta.egg-info/PKG-INFO writing dependency_links to delta.egg-info/dependency_links.txt reading manifest file 'delta.egg-info/SOURCES.txt' writing manifest file 'delta.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url warning: check: missing meta-data: if 'author' supplied, 'author_email' must be supplied too creating delta-2.0.0.dev1 creating delta-2.0.0.dev1/delta creating delta-2.0.0.dev1/delta.egg-info copying files to delta-2.0.0.dev1... copying README.rst -> delta-2.0.0.dev1 copying setup.cfg -> delta-2.0.0.dev1 copying setup.py -> delta-2.0.0.dev1 copying delta/__init__.py -> delta-2.0.0.dev1/delta copying delta/cluster.py -> delta-2.0.0.dev1/delta copying delta/corpus.py -> delta-2.0.0.dev1/delta copying delta/deltas.py -> delta-2.0.0.dev1/delta copying delta/experiments.py -> delta-2.0.0.dev1/delta copying delta/features.py -> delta-2.0.0.dev1/delta copying delta/graphics.py -> delta-2.0.0.dev1/delta copying delta/util.py -> delta-2.0.0.dev1/delta copying delta.egg-info/PKG-INFO -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/SOURCES.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/dependency_links.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/requires.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/top_level.txt -> delta-2.0.0.dev1/delta.egg-info Writing delta-2.0.0.dev1/setup.cfg creating dist Creating tar archive removing 'delta-2.0.0.dev1' (and everything under it) running bdist running bdist_dumb running build running build_py creating build creating build/lib creating build/lib/delta copying delta/corpus.py -> build/lib/delta copying delta/graphics.py -> build/lib/delta copying delta/deltas.py -> build/lib/delta copying delta/cluster.py -> build/lib/delta copying delta/__init__.py -> build/lib/delta copying delta/experiments.py -> build/lib/delta copying delta/features.py -> build/lib/delta copying delta/util.py -> build/lib/delta installing to build/bdist.linux-x86_64/dumb running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/dumb creating build/bdist.linux-x86_64/dumb/mnt creating build/bdist.linux-x86_64/dumb/mnt/data creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/corpus.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/graphics.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/deltas.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/cluster.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/__init__.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/experiments.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/features.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/util.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/corpus.py to corpus.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/graphics.py to graphics.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/deltas.py to deltas.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/cluster.py to cluster.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/__init__.py to __init__.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/experiments.py to experiments.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/features.py to features.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/util.py to util.cpython-35.pyc running install_egg_info Copying delta.egg-info to build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta-2.0.0.dev1-py3.5.egg-info running install_scripts Creating tar archive removing 'build/bdist.linux-x86_64/dumb' (and everything under it) + ./setup.py build_sphinx running build_sphinx creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/doctrees creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html Running Sphinx v1.5.5 loading pickled environment... not yet created loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/2/objects.inv loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 8 source files that are out of date updating environment: 8 added, 0 changed, 0 removed reading sources... [ 12%] GettingStarted /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.html#delta.corpus.Corpus' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.html#corpus.Corpus.relative_frequencies' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.html#corpus.Corpus.get_mfw_table' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.html#deltas.DistanceMatrix' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.rst#cluster.Clustering' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.html#graph.Dendrogram' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.html#corpus.DocumentDescriber' /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb: WARNING: file not found: 'delta.rst#cluster.FlatClustering' reading sources... [ 25%] README reading sources... [ 37%] README-branch reading sources... [ 50%] concept reading sources... [ 62%] delta reading sources... [ 75%] index reading sources... [ 87%] modules reading sources... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: ERROR: Unknown interpreted text role "function". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: ERROR: Unknown interpreted text role "param". /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:8: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:12: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: ERROR: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:70: WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7f8f2eb44be0>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7f8f2e483b70>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7f8f279f42f0>, <class 'delta.graphics.Dendrogram'>, <class 'delta.cluster.KMedoidsClustering'>] (in module delta) -- ignoring __all__ /mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:13: ERROR: Unknown target name: "facet". /mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:18: ERROR: Unknown target name: "facet". /mnt/data/jenkins/workspace/pydelta-next/delta/experiments.py:docstring of delta.experiments:23: ERROR: Unknown target name: "facet". /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: ERROR: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst:: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst:: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 12%] GettingStarted writing output... [ 25%] README writing output... [ 37%] README-branch writing output... [ 50%] concept writing output... [ 62%] delta writing output... [ 75%] index writing output... [ 87%] modules writing output... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:319: WARNING: 'any' reference target not found: the :math:`n /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:16: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:None: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:None: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:None: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:None: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:None: WARNING: 'any' reference target not found: f generating indices... genindex py-modindex highlighting module code... [ 20%] delta.util highlighting module code... [ 40%] delta.deltas highlighting module code... [ 60%] delta.corpus highlighting module code... [ 80%] delta.cluster highlighting module code... [100%] delta.graphics writing additional pages... search copying images... [100%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/pydelta-next/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 38 warnings. + nosetests .................. Name Stmts Miss Cover ------------------------------------------ delta.py 16 2 88% delta/cluster.py 108 16 85% delta/corpus.py 187 67 64% delta/deltas.py 315 108 66% delta/experiments.py 2 0 100% delta/features.py 19 14 26% delta/graphics.py 85 66 22% delta/util.py 108 24 78% ------------------------------------------ TOTAL 840 297 65% ---------------------------------------------------------------------- Ran 18 tests in 6.880s OK [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@7774a345[description=an experimental implementation of Burrow's delta in Python 3,homepage=<null>,name=pydelta,license=<null>,fork=true,size=2399,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971]] (sha:ab56758) with context:pydelta-next Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/ab56758d3027eb4b893653be2156e9abac6b4834 Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion No emails were triggered. Finished: SUCCESS