Console Output

Started by GitHub push by thvitt
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen
[ssh-agent] Looking for ssh-agent implementation...
[ssh-agent]   Exec ssh-agent (binary ssh-agent on a remote machine)
$ ssh-agent
SSH_AUTH_SOCK=/tmp/ssh-J8hAbNf6UY57/agent.17971
SSH_AGENT_PID=17973
[ssh-agent] Started.
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key)
[ssh-agent] Using credentials git
$ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key
Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key)
[ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de)
 > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10
Fetching upstream changes from git://github.com/faustedition/faust-macrogen
 > /usr/bin/git --version # timeout=10
using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de
 > /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision b205d9840af1cc0dcafebd36447dc4577bdc49db (refs/remotes/origin/master)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f b205d9840af1cc0dcafebd36447dc4577bdc49db
Commit message: "Fixed logger names"
 > /usr/bin/git rev-list --no-walk 52b6694bd426429e0b9576bf05e9dc3cf3a51099 # timeout=10
 > /usr/bin/git remote # timeout=10
 > /usr/bin/git submodule init # timeout=10
 > /usr/bin/git submodule sync # timeout=10
 > /usr/bin/git config --get remote.origin.url # timeout=10
 > /usr/bin/git submodule init # timeout=10
 > /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > /usr/bin/git config --get submodule.data.url # timeout=10
 > /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10
 > /usr/bin/git submodule update --init --recursive --remote data
$ bash -c "[ -d \$HOME/.pyenv ]"
$ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true"
$ bash -c "mkdir \$HOME/.pyenv.lock"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "rm -rf \$HOME/.pyenv.lock"
[faust-macrogen] $ /bin/sh -xe /tmp/jenkins4743773234579915282.sh
+ pipenv install
Installing dependencies from Pipfile.lock (8f5326)…
To activate this project's virtualenv, run the following:
 $ pipenv shell
+ pipenv run ./main.py
/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88
  return f(*args, **kwds)
WARNING  datings  Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight'
INFO     datings  Reading data to build base graph ...
WARNING  uris     Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_)
WARNING  uris     Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_)
ERROR    datings  Absolute dating without a date:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
      <comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment>
      <source uri="faust://bibliography/bohnenkamp1994">S.322</source>
      <item uri="faust://inscription/wa/2_I_H.10/i_uebrige"/>
   </date>
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:115
ERROR    datings  Absolute dating without a date:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
      <comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment>
      <source uri="faust://bibliography/bohnenkamp1994">S.322</source>
      <item uri="faust://inscription/wa/2_I_H.10/i_v"/>
   </date>
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:121
ERROR    datings  Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict:
<date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" notBefore="1827-12-25" notAfter="1817-12-25">
      <comment>Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . </comment>
      <source uri="faust://bibliography/gsa-datenbank"/>
      <item uri="faust://document/wa/2_I_H.f"/>
   </date>
   
 at data/xml/macrogenesis/handschriftendatierung_i.xml:663
INFO     graph    Removing hertz and temp-syn
INFO     graph    Extracted 5 subgraphs with conflicts
INFO     graph    Calculating minimum feedback arc set for 5 subgraphs
DEBUG    graph    Calculating MFAS for a 2-node graph using ip, may take a while
DEBUG    graph    1 edges to remove
DEBUG    graph    Calculating MFAS for a 3-node graph using ip, may take a while
DEBUG    graph    2 edges to remove
DEBUG    graph    Calculating MFAS for a 4-node graph using ip, may take a while
DEBUG    graph    2 edges to remove
DEBUG    graph    Calculating MFAS for a 55-node graph using eades, may take a while
DEBUG    graph    11 edges to remove
DEBUG    graph    Calculating MFAS for a 693-node graph using eades, may take a while
DEBUG    graph    351 edges to remove
WARNING  graph    Found 19 self loops, will also remove those. Affected nodes: 2 III H.3a:1, 2 III H.3a:1, 2 III H.76, 2 III H.76, fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 , 2 III H.70, 2 III H.70, 2 III H.70, 2 II H.22, 2 II H.22, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.50c, 2 III H.50c
INFO     graph    Marking 386 conflicting edges for deletion
INFO     graph    Building DAG from remaining data
INFO     graph    Removed 386 of the original 3146 edges
INFO     graph    Augmenting refs with data from graphs
INFO     graph    Creating sort order from DAG
INFO     visualize Writing target/macrogenesis/help-pre.dot ...
Traceback (most recent call last):
  File "./main.py", line 27, in <module>
    _main()
  File "./main.py", line 15, in _main
    report_help()
  File "/mnt/data/jenkins/workspace/faust-macrogen/report.py", line 369, in report_help
    write_dot(graph, str(target / f'help-{name}.dot'))
  File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 129, in write_dot
    agraph.write(dotfilename)
  File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1219, in write
    fh = self._get_fh(path, 'w')
  File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1506, in _get_fh
    fh = open(path, mode=mode)
FileNotFoundError: [Errno 2] No such file or directory: 'target/macrogenesis/help-pre.dot'
Build step 'Execute shell' marked build as failure
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 17973 killed;
[ssh-agent] Stopped.
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: FAILURE