Console Output
Started by GitHub push by severinsimmler
Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/cophi_toolbox
> /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> /usr/bin/git config remote.origin.url git://github.com/cophi-wue/cophi-toolbox # timeout=10
Fetching upstream changes from git://github.com/cophi-wue/cophi-toolbox
> /usr/bin/git --version # timeout=10
using GIT_ASKPASS to set credentials
> /usr/bin/git fetch --tags --progress git://github.com/cophi-wue/cophi-toolbox +refs/heads/*:refs/remotes/origin/*
Seen branch in repository origin/ddw
Seen branch in repository origin/gh-pages
Seen branch in repository origin/master
Seen branch in repository origin/oop
Seen branch in repository origin/testing
Seen 5 remote branches
> /usr/bin/git show-ref --tags -d # timeout=10
Checking out Revision 4dcb6184bc45d85a372df16470996aaaddf1037d (origin/testing)
> /usr/bin/git config core.sparsecheckout # timeout=10
> /usr/bin/git checkout -f 4dcb6184bc45d85a372df16470996aaaddf1037d
Commit message: "fix: class name"
> /usr/bin/git rev-list --no-walk 7bdccb660133c01d20176d52465c1b152f8474dd # timeout=10
[cophi_toolbox] $ /bin/sh -xe /tmp/jenkins5634335575945677208.sh
+ tox
GLOB sdist-make: /mnt/data/jenkins/workspace/cophi_toolbox/setup.py
py34 create: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/py34
SKIPPED: InterpreterNotFound: python3.4
py35 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.0.zip
py35 installed: atomicwrites==1.3.0,attrs==19.1.0,cophi==1.3.0,coverage==4.5.3,lxml==4.3.2,more-itertools==6.0.0,numpy==1.16.2,pandas==0.24.2,pathlib2==2.3.3,pluggy==0.9.0,py==1.8.0,pytest==4.3.1,pytest-cov==2.6.1,python-dateutil==2.8.0,pytz==2018.9,regex==2019.3.12,six==1.12.0
py35 run-test-pre: PYTHONHASHSEED='4233402089'
py35 runtests: commands[0] | pytest
============================= test session starts ==============================
platform linux -- Python 3.5.6, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
cachedir: .tox/py35/.pytest_cache
rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg
plugins: cov-2.6.1
collected 91 items
tests/test_api.py .FE [ 3%]
tests/test_complexity.py ...................... [ 27%]
tests/test_model.py .................................................... [ 84%]
......... [ 94%]
tests/test_utils.py ..... [100%]
==================================== ERRORS ====================================
________________________ ERROR at setup of test_export _________________________
@pytest.fixture
def document():
> return cophi.model.Document(DOCUMENT, "document", r"\w")
E AttributeError: module 'cophi' has no attribute 'model'
tests/test_api.py:15: AttributeError
=================================== FAILURES ===================================
_________________________________ test_corpus __________________________________
tmpdir = local('/tmp/pytest-of-jenkins/pytest-24/test_corpus0')
def test_corpus(tmpdir):
p = make_file(tmpdir, "document.txt", DOCUMENT)
directory = pathlib.Path(str(p)).parent
corpus, metadata = cophi.corpus(directory, metadata=True)
> assert metadata["parent"].iloc[0] == str(directory)
E AssertionError: assert PosixPath('/tmp/pytest-of-jenkins/pytest-24/test_corpus0/sub') == '/tmp/pytest-of-jenkins/pytest-24/test_corpus0/sub'
E + where '/tmp/pytest-of-jenkins/pytest-24/test_corpus0/sub' = str(PosixPath('/tmp/pytest-of-jenkins/pytest-24/test_corpus0/sub'))
tests/test_api.py:30: AssertionError
--- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ----
----------- coverage: platform linux, python 3.5.6-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml
================= 1 failed, 89 passed, 1 error in 0.93 seconds =================
ERROR: InvocationError for command '/mnt/data/jenkins/workspace/cophi_toolbox/.tox/py35/bin/pytest' (exited with code 1)
py36 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.0.zip
py36 installed: atomicwrites==1.3.0,attrs==19.1.0,cophi==1.3.0,coverage==4.5.3,lxml==4.3.2,more-itertools==6.0.0,numpy==1.16.2,pandas==0.24.2,pluggy==0.9.0,py==1.8.0,pytest==4.3.1,pytest-cov==2.6.1,python-dateutil==2.8.0,pytz==2018.9,regex==2019.3.12,six==1.12.0
py36 run-test-pre: PYTHONHASHSEED='4233402089'
py36 runtests: commands[0] | pytest
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
cachedir: .tox/py36/.pytest_cache
rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg
plugins: cov-2.6.1
collected 91 items
tests/test_api.py .FE [ 3%]
tests/test_complexity.py ...................... [ 27%]
tests/test_model.py .................................................... [ 84%]
......... [ 94%]
tests/test_utils.py ..... [100%]
==================================== ERRORS ====================================
________________________ ERROR at setup of test_export _________________________
@pytest.fixture
def document():
> return cophi.model.Document(DOCUMENT, "document", r"\w")
E AttributeError: module 'cophi' has no attribute 'model'
tests/test_api.py:15: AttributeError
=================================== FAILURES ===================================
_________________________________ test_corpus __________________________________
tmpdir = local('/tmp/pytest-of-jenkins/pytest-25/test_corpus0')
def test_corpus(tmpdir):
p = make_file(tmpdir, "document.txt", DOCUMENT)
directory = pathlib.Path(str(p)).parent
corpus, metadata = cophi.corpus(directory, metadata=True)
> assert metadata["parent"].iloc[0] == str(directory)
E AssertionError: assert PosixPath('/tmp/pytest-of-jenkins/pytest-25/test_corpus0/sub') == '/tmp/pytest-of-jenkins/pytest-25/test_corpus0/sub'
E + where '/tmp/pytest-of-jenkins/pytest-25/test_corpus0/sub' = str(PosixPath('/tmp/pytest-of-jenkins/pytest-25/test_corpus0/sub'))
tests/test_api.py:30: AssertionError
=============================== warnings summary ===============================
src/cophi/text/model.py:489
/mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/model.py:489: DeprecationWarning: invalid escape sequence \m
"""
-- Docs: https://docs.pytest.org/en/latest/warnings.html
--- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ----
----------- coverage: platform linux, python 3.6.8-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml
=========== 1 failed, 89 passed, 1 warnings, 1 error in 0.89 seconds ===========
ERROR: InvocationError for command '/mnt/data/jenkins/workspace/cophi_toolbox/.tox/py36/bin/pytest' (exited with code 1)
py37 inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.0.zip
py37 installed: atomicwrites==1.3.0,attrs==19.1.0,cophi==1.3.0,coverage==4.5.3,lxml==4.3.2,more-itertools==6.0.0,numpy==1.16.2,pandas==0.24.2,pluggy==0.9.0,py==1.8.0,pytest==4.3.1,pytest-cov==2.6.1,python-dateutil==2.8.0,pytz==2018.9,regex==2019.3.12,six==1.12.0
py37 run-test-pre: PYTHONHASHSEED='4233402089'
py37 runtests: commands[0] | pytest
============================= test session starts ==============================
platform linux -- Python 3.7.2+, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
cachedir: .tox/py37/.pytest_cache
rootdir: /mnt/data/jenkins/workspace/cophi_toolbox, inifile: setup.cfg
plugins: cov-2.6.1
collected 91 items
tests/test_api.py .FE [ 3%]
tests/test_complexity.py ...................... [ 27%]
tests/test_model.py .................................................... [ 84%]
......... [ 94%]
tests/test_utils.py ..... [100%]
==================================== ERRORS ====================================
________________________ ERROR at setup of test_export _________________________
@pytest.fixture
def document():
> return cophi.model.Document(DOCUMENT, "document", r"\w")
E AttributeError: module 'cophi' has no attribute 'model'
tests/test_api.py:15: AttributeError
=================================== FAILURES ===================================
_________________________________ test_corpus __________________________________
tmpdir = local('/tmp/pytest-of-jenkins/pytest-26/test_corpus0')
def test_corpus(tmpdir):
p = make_file(tmpdir, "document.txt", DOCUMENT)
directory = pathlib.Path(str(p)).parent
corpus, metadata = cophi.corpus(directory, metadata=True)
> assert metadata["parent"].iloc[0] == str(directory)
E AssertionError: assert PosixPath('/tmp/pytest-of-jenkins/pytest-26/test_corpus0/sub') == '/tmp/pytest-of-jenkins/pytest-26/test_corpus0/sub'
E + where '/tmp/pytest-of-jenkins/pytest-26/test_corpus0/sub' = str(PosixPath('/tmp/pytest-of-jenkins/pytest-26/test_corpus0/sub'))
tests/test_api.py:30: AssertionError
=============================== warnings summary ===============================
src/cophi/text/model.py:489
/mnt/data/jenkins/workspace/cophi_toolbox/src/cophi/text/model.py:489: DeprecationWarning: invalid escape sequence \m
"""
-- Docs: https://docs.pytest.org/en/latest/warnings.html
--- generated xml file: /mnt/data/jenkins/workspace/cophi_toolbox/tests.xml ----
----------- coverage: platform linux, python 3.7.2-final-0 -----------
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml
=========== 1 failed, 89 passed, 1 warnings, 1 error in 0.84 seconds ===========
ERROR: InvocationError for command '/mnt/data/jenkins/workspace/cophi_toolbox/.tox/py37/bin/pytest' (exited with code 1)
docs inst-nodeps: /mnt/data/jenkins/workspace/cophi_toolbox/.tox/.tmp/package/1/cophi-1.3.0.zip
docs installed: alabaster==0.7.12,Babel==2.6.0,certifi==2019.3.9,chardet==3.0.4,cophi==1.3.0,docutils==0.14,idna==2.8,imagesize==1.1.0,Jinja2==2.10,lxml==4.3.2,MarkupSafe==1.1.1,numpy==1.16.2,packaging==19.0,pandas==0.24.2,Pygments==2.3.1,pyparsing==2.3.1,python-dateutil==2.8.0,pytz==2018.9,regex==2019.3.12,requests==2.21.0,six==1.12.0,snowballstemmer==1.2.1,Sphinx==1.8.5,sphinxcontrib-websupport==1.1.0,urllib3==1.24.1
docs run-test-pre: PYTHONHASHSEED='4233402089'
docs runtests: commands[0] | sphinx-build -E -b html docs dist/docs
Running Sphinx v1.8.5
loading intersphinx inventory from https://docs.python.org/objects.inv...
intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 3 source files that are out of date
updating environment: 3 added, 0 changed, 0 removed
reading sources... [ 33%] index
reading sources... [ 66%] reference/cophi-toolbox
reading sources... [100%] reference/index
/mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup".
.. testsetup::
from cophi import *
WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised:
No module named 'cophi_toolbox'
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 33%] index
writing output... [ 66%] reference/cophi-toolbox
writing output... [100%] reference/index
generating indices... genindex
writing additional pages... search
copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/cophi_toolbox/docs/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 5 warnings.
The HTML pages are in dist/docs.
docs runtests: commands[1] | sphinx-build -b linkcheck docs dist/docs
Running Sphinx v1.8.5
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [linkcheck]: targets for 3 source files that are out of date
updating environment: [] 0 added, 1 changed, 0 removed
reading sources... [100%] reference/cophi-toolbox
/mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst:3: WARNING: Unknown directive type "testsetup".
.. testsetup::
from cophi import *
WARNING: autodoc: failed to import module 'preprocessing' from module 'cophi_toolbox'; the following exception was raised:
No module named 'cophi_toolbox'
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/cophi-toolbox.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/cophi_toolbox/docs/reference/index.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 33%] index
writing output... [ 66%] reference/cophi-toolbox
writing output... [100%] reference/index
build succeeded, 4 warnings.
Look for any errors in the above output or in dist/docs/output.txt
___________________________________ summary ____________________________________
SKIPPED: py34: InterpreterNotFound: python3.4
ERROR: py35: commands failed
ERROR: py36: commands failed
ERROR: py37: commands failed
docs: commands succeeded
Build step 'Execute shell' marked build as failure
[TASKS] Skipping publisher since build result is FAILURE
Recording test results
[Cobertura] Publishing Cobertura coverage report...
[Cobertura] Publishing Cobertura coverage results...
[Cobertura] Cobertura coverage report found.
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@61eca08f[description=A repository containing general functions for processing and accessing text corpora,homepage=<null>,name=cophi-toolbox,license=<null>,fork=false,size=511,milestones={},language=Jupyter Notebook,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 25 Apr 2019 18:03:49 GMT], ETag=[W/"1420525cac64fd874d89800f7503c602"], Last-Modified=[Sun, 14 Apr 2019 03:45:43 GMT], OkHttp-Received-Millis=[1556215429235], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1556215429015], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[819A:544C:40A8BC:A32E6A:5CC1F684], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4978], X-RateLimit-Reset=[1556216433], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/cophi-wue/cophi-toolbox,id=113045733]] (sha:4dcb618) with context:cophi_toolbox
Setting commit status on GitHub for https://github.com/cophi-wue/cophi-toolbox/commit/4dcb6184bc45d85a372df16470996aaaddf1037d
[BFA] Scanning build for known causes...
[BFA] No failure causes found
[BFA] Done. 0s
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
Finished: FAILURE
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