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Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 1bd46524b0c465e7e945a75fabb568bc1c376f49 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 1bd46524b0c465e7e945a75fabb568bc1c376f49 Commit message: "Merge branch 'pytest' into testing" > git rev-list 53c089135870513e32a57caa5a4c8787ff215026 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda547043776668242008.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting pytest (from -r requirements-dev.txt (line 4)) Using cached pytest-3.3.1-py2.py3-none-any.whl Collecting pytest-cov (from -r requirements-dev.txt (line 5)) Downloading pytest_cov-2.5.1-py2.py3-none-any.whl Collecting pytest-nbsmoke (from -r requirements-dev.txt (line 6)) Downloading pytest_nbsmoke-0.1.5-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 9)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting sphinx (from -r requirements-dev.txt (line 10)) Using cached Sphinx-1.6.5-py2.py3-none-any.whl Collecting nbsphinx from git+https://github.com/spatialaudio/nbsphinx#egg=nbsphinx (from -r requirements-dev.txt (line 11)) Cloning https://github.com/spatialaudio/nbsphinx to /tmp/pip-build-hmj0zmbg/nbsphinx Collecting recommonmark (from -r requirements-dev.txt (line 12)) Using cached recommonmark-0.4.0-py2.py3-none-any.whl Collecting pyinstaller (from -r requirements-dev.txt (line 15)) Downloading PyInstaller-3.3.1.tar.gz (3.5MB) Collecting pandas>=0.19.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.21.1-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached gensim-3.2.0-cp35-cp35m-manylinux1_x86_64.whl Collecting lda>=1.0.5 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl Collecting lxml>=3.6.4 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached lxml-4.1.1-cp35-cp35m-manylinux1_x86_64.whl Collecting flask>=0.11.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Flask-0.12.2-py2.py3-none-any.whl Collecting matplotlib>=1.5.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-2.1.1-cp35-cp35m-manylinux1_x86_64.whl Collecting bokeh>=0.12.6 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting wordcloud>=1.3.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting attrs>=17.2.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached attrs-17.3.0-py2.py3-none-any.whl Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached py-1.5.2-py2.py3-none-any.whl Collecting pluggy<0.7,>=0.5 (from pytest->-r requirements-dev.txt (line 4)) Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->-r requirements-dev.txt (line 4)) Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting coverage>=3.7.1 (from pytest-cov->-r requirements-dev.txt (line 5)) Using cached coverage-4.4.2-cp35-cp35m-manylinux1_x86_64.whl Collecting jupyter-client (from pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached jupyter_client-5.2.0-py2.py3-none-any.whl Collecting pyflakes (from pytest-nbsmoke->-r requirements-dev.txt (line 6)) Downloading pyflakes-1.6.0-py2.py3-none-any.whl (227kB) Collecting nbconvert (from pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Collecting ipykernel (from pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached ipykernel-4.7.0-py3-none-any.whl Collecting nbformat (from pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 9)) Using cached ipywidgets-7.0.5-py2.py3-none-any.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 9)) Using cached notebook-5.2.2-py2.py3-none-any.whl Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 9)) Using cached qtconsole-4.3.1-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 9)) Using cached jupyter_console-5.2.0-py2.py3-none-any.whl Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 10)) Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 10)) Using cached Babel-2.5.1-py2.py3-none-any.whl Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 10)) Using cached alabaster-0.7.10-py2.py3-none-any.whl Collecting imagesize (from sphinx->-r requirements-dev.txt (line 10)) Using cached imagesize-0.7.1-py2.py3-none-any.whl Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 10)) Using cached docutils-0.14-py3-none-any.whl Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 10)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 10)) Using cached requests-2.18.4-py2.py3-none-any.whl Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 10)) Using cached Jinja2-2.10-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 10)) Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 11)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 12)) Collecting pefile>=2017.8.1 (from pyinstaller->-r requirements-dev.txt (line 15)) Downloading pefile-2017.11.5.tar.gz (61kB) Collecting macholib>=1.8 (from pyinstaller->-r requirements-dev.txt (line 15)) Downloading macholib-1.9-py2.py3-none-any.whl (40kB) Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.3-py2.py3-none-any.whl Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pbr-3.1.1-py2.py3-none-any.whl Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Werkzeug-0.13-py2.py3-none-any.whl Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pyparsing-2.2.0-py2.py3-none-any.whl Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pillow (from wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Pillow-4.3.0-cp35-cp35m-manylinux1_x86_64.whl Collecting pyzmq>=13 (from jupyter-client->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached pyzmq-16.0.3-cp35-cp35m-manylinux1_x86_64.whl Collecting jupyter-core (from jupyter-client->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached jupyter_core-4.4.0-py2.py3-none-any.whl Collecting bleach (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached bleach-2.1.2-py2.py3-none-any.whl Collecting testpath (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached testpath-0.3.1-py2.py3-none-any.whl Collecting mistune>=0.7.4 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached mistune-0.8.3-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Collecting entrypoints>=0.2.2 (from nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting ipython>=4.0.0 (from ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached ipython-6.2.1-py3-none-any.whl Collecting ipython-genutils (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 9)) Using cached widgetsnbextension-3.0.8-py2.py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 9)) Using cached terminado-0.8.1-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 9)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10)) Using cached certifi-2017.11.5-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10)) Using cached idna-2.6-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 10)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 10)) Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 11)) Using cached decorator-4.1.2-py2.py3-none-any.whl Collecting future (from pefile>=2017.8.1->pyinstaller->-r requirements-dev.txt (line 15)) Collecting altgraph>=0.15 (from macholib>=1.8->pyinstaller->-r requirements-dev.txt (line 15)) Downloading altgraph-0.15-py2.py3-none-any.whl Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached boto-2.48.0-py2.py3-none-any.whl Collecting boto3 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Downloading boto3-1.5.3-py2.py3-none-any.whl (128kB) Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting olefile (from pillow->wordcloud>=1.3.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached html5lib-1.0.1-py2.py3-none-any.whl Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached pexpect-4.3.1-py2.py3-none-any.whl Collecting pickleshare (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached jedi-0.11.1-py2.py3-none-any.whl Collecting ptyprocess; os_name != "nt" (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 9)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting botocore<1.9.0,>=1.8.17 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Downloading botocore-1.8.17-py2.py3-none-any.whl (4.0MB) Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached s3transfer-0.1.12-py2.py3-none-any.whl Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached jmespath-0.9.3-py2.py3-none-any.whl Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Collecting parso==0.1.1 (from jedi>=0.10->ipython>=4.0.0->ipykernel->pytest-nbsmoke->-r requirements-dev.txt (line 6)) Using cached parso-0.1.1-py2.py3-none-any.whl Building wheels for collected packages: pyinstaller, pefile Running setup.py bdist_wheel for pyinstaller: started Running setup.py bdist_wheel for pyinstaller: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/2f/f8/8e/d8ee9b359f487a8488380f0b522d81fa5ee01956161d41b72e Running setup.py bdist_wheel for pefile: started Running setup.py bdist_wheel for pefile: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/30/34/1d/5f4e14feee63c615a1ae25c211b21237a6a74c1c4fb6639842 Successfully built pyinstaller pefile Installing collected packages: attrs, py, pluggy, six, pytest, coverage, pytest-cov, pyzmq, python-dateutil, ipython-genutils, decorator, traitlets, jupyter-core, jupyter-client, pyflakes, MarkupSafe, Jinja2, webencodings, html5lib, bleach, Pygments, testpath, mistune, jsonschema, nbformat, pandocfilters, entrypoints, nbconvert, tornado, simplegeneric, ptyprocess, pexpect, pickleshare, parso, jedi, wcwidth, prompt-toolkit, ipython, ipykernel, pytest-nbsmoke, terminado, notebook, widgetsnbextension, ipywidgets, qtconsole, jupyter-console, jupyter, sphinxcontrib-websupport, pytz, babel, alabaster, imagesize, docutils, certifi, idna, chardet, urllib3, requests, snowballstemmer, sphinx, nbsphinx, commonmark, recommonmark, future, pefile, altgraph, macholib, pyinstaller, numpy, pandas, regex, scipy, boto, jmespath, botocore, s3transfer, boto3, bz2file, smart-open, gensim, pbr, lda, lxml, Werkzeug, click, itsdangerous, flask, cycler, pyparsing, matplotlib, PyYAML, bokeh, olefile, pillow, wordcloud, dariah-topics Running setup.py install for nbsphinx: started Running setup.py install for nbsphinx: finished with status 'done' Running setup.py develop for dariah-topics Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.13 alabaster-0.7.10 altgraph-0.15 attrs-17.3.0 babel-2.5.1 bleach-2.1.2 bokeh-0.12.13 boto-2.48.0 boto3-1.5.3 botocore-1.8.17 bz2file-0.98 certifi-2017.11.5 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.2 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 future-0.16.0 gensim-3.2.0 html5lib-1.0.1 idna-2.6 imagesize-0.7.1 ipykernel-4.7.0 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.5 itsdangerous-0.24 jedi-0.11.1 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.0 jupyter-console-5.2.0 jupyter-core-4.4.0 lda-1.0.5 lxml-4.1.1 macholib-1.9 matplotlib-2.1.1 mistune-0.8.3 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.18 notebook-5.2.2 numpy-1.13.3 olefile-0.44 pandas-0.21.1 pandocfilters-1.4.2 parso-0.1.1 pbr-3.1.1 pefile-2017.11.5 pexpect-4.3.1 pickleshare-0.7.4 pillow-4.3.0 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.2 pyflakes-1.6.0 pyinstaller-3.3.1 pyparsing-2.2.0 pytest-3.3.1 pytest-cov-2.5.1 pytest-nbsmoke-0.1.5 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.3 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.12.12 requests-2.18.4 s3transfer-0.1.12 scipy-1.0.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.5 snowballstemmer-1.2.1 sphinx-1.6.5 sphinxcontrib-websupport-1.0.1 terminado-0.8.1 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.8 wordcloud-1.3.1 + ./setup.py sdist bdist_wheel running sdist running egg_info writing top-level names to dariah_topics.egg-info/top_level.txt writing dariah_topics.egg-info/PKG-INFO writing requirements to dariah_topics.egg-info/requires.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url creating dariah_topics-0.4.0.dev1 creating dariah_topics-0.4.0.dev1/dariah_topics creating dariah_topics-0.4.0.dev1/dariah_topics.egg-info creating dariah_topics-0.4.0.dev1/test copying files to dariah_topics-0.4.0.dev1... copying README.md -> dariah_topics-0.4.0.dev1 copying setup.cfg -> dariah_topics-0.4.0.dev1 copying setup.py -> dariah_topics-0.4.0.dev1 copying dariah_topics/__init__.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/doc_meta_list.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/meta.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/postprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.4.0.dev1/test Writing dariah_topics-0.4.0.dev1/setup.cfg Creating tar archive removing 'dariah_topics-0.4.0.dev1' (and everything under it) running bdist_wheel running build running build_py copying dariah_topics/postprocessing.py -> build/lib/dariah_topics copying dariah_topics/visualization.py -> build/lib/dariah_topics copying dariah_topics/mallet.py -> build/lib/dariah_topics installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doc_meta_list.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.4.0.dev1-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/doc_meta_list.py' adding 'dariah_topics/doclist.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/mallet.py' adding 'dariah_topics/meta.py' adding 'dariah_topics/postprocessing.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-0.4.0.dev1.dist-info/DESCRIPTION.rst' adding 'dariah_topics-0.4.0.dev1.dist-info/metadata.json' adding 'dariah_topics-0.4.0.dev1.dist-info/top_level.txt' adding 'dariah_topics-0.4.0.dev1.dist-info/WHEEL' adding 'dariah_topics-0.4.0.dev1.dist-info/METADATA' adding 'dariah_topics-0.4.0.dev1.dist-info/RECORD' + pytest --nbsmoke-run ============================= test session starts ============================== platform linux -- Python 3.5.3, pytest-3.3.1, py-1.5.2, pluggy-0.6.0 rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg plugins: nbsmoke-0.1.5, cov-2.5.1 collected 61 items IntroducingGensim.ipynb . [ 1%] IntroducingLda.ipynb . [ 3%] IntroducingMallet.ipynb . [ 4%] Visualizations.ipynb . [ 6%] dariah_topics/mallet.py .FF... [ 16%] dariah_topics/postprocessing.py ........... [ 34%] dariah_topics/preprocessing.py ........................... [ 78%] dariah_topics/visualization.py .. [ 81%] test/demonstrator_test.py .. [ 85%] test/test_fuzzy_segmenting.py ......... [100%] --- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ---- ----------- coverage: platform linux, python 3.5.3-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml =================================== FAILURES =================================== ________ [doctest] dariah_topics.mallet.Mallet.import_tokenized_corpus _________ 275 False. 276 277 Returns: 278 The absolute path to the created MALLET corpus file. 279 280 Example: 281 >>> tokenized_corpus = [['this', 'is', 'a', 'tokenized', 'document']] 282 >>> document_labels = ['document_label'] 283 >>> Mallet = Mallet(corpus_output='.') 284 >>> mallet_corpus = Mallet.import_tokenized_corpus(tokenized_corpus, document_labels) UNEXPECTED EXCEPTION: OSError('MALLET did not produce any output files. Maybe check your args?',) Traceback (most recent call last): File "/usr/lib/python3.5/doctest.py", line 1321, in __run compileflags, 1), test.globs) File "<doctest dariah_topics.mallet.Mallet.import_tokenized_corpus[3]>", line 1, in <module> File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 296, in import_tokenized_corpus _check_mallet_output(os.path.join(self.corpus_output, 'corpus.mallet')) File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 157, in _check_mallet_output raise OSError("MALLET did not produce any output files. Maybe check your args?") OSError: MALLET did not produce any output files. Maybe check your args? /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:284: UnexpectedException ----------------------------- Captured stderr call ----------------------------- INFO dariah_topics.postprocessing: Saving tokenized corpus to . ... DEBUG dariah_topics.postprocessing: Current file: document_label INFO dariah_topics.mallet: Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ... ------------------------------ Captured log call ------------------------------- postprocessing.py 212 INFO Saving tokenized corpus to . ... postprocessing.py 218 DEBUG Current file: document_label mallet.py 94 INFO Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ... ______________ [doctest] dariah_topics.mallet.Mallet.train_topics ______________ 373 beta (float): Smoothing parameter for each topic-word. Defaults to 0.01. 374 375 Returns: 376 None. 377 378 Example: 379 >>> tokenized_corpus = [['this', 'is', 'a', 'tokenized', 'document']] 380 >>> document_labels = ['document_label'] 381 >>> Mallet = Mallet(corpus_output='.') 382 >>> mallet_corpus = Mallet.import_tokenized_corpus(tokenized_corpus, document_labels) UNEXPECTED EXCEPTION: OSError('MALLET did not produce any output files. Maybe check your args?',) Traceback (most recent call last): File "/usr/lib/python3.5/doctest.py", line 1321, in __run compileflags, 1), test.globs) File "<doctest dariah_topics.mallet.Mallet.train_topics[3]>", line 1, in <module> File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 296, in import_tokenized_corpus _check_mallet_output(os.path.join(self.corpus_output, 'corpus.mallet')) File "/mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py", line 157, in _check_mallet_output raise OSError("MALLET did not produce any output files. Maybe check your args?") OSError: MALLET did not produce any output files. Maybe check your args? /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/mallet.py:382: UnexpectedException ----------------------------- Captured stderr call ----------------------------- INFO dariah_topics.postprocessing: Saving tokenized corpus to . ... DEBUG dariah_topics.postprocessing: Current file: document_label INFO dariah_topics.mallet: Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ... ------------------------------ Captured log call ------------------------------- postprocessing.py 212 INFO Saving tokenized corpus to . ... postprocessing.py 218 DEBUG Current file: document_label mallet.py 94 INFO Calling the command-line: /usr/local/bin/mallet import-dir --input . --output ./corpus.mallet --keep-sequence ... =============================== warnings summary =============================== dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._create_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._hapax_legomena_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._remove_features_from_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._stopwords_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.create_document_term_matrix /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_hapax_legomena /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_stopwords /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.remove_features /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) -- Docs: http://doc.pytest.org/en/latest/warnings.html ============== 2 failed, 59 passed, 10 warnings in 126.54 seconds ============== Build step 'Virtualenv Builder' marked build as failure Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] ERROR on repos [GHRepository@134a1b05[description=A Python library for Topic Modeling.,homepage=,name=Topics,license=<null>,fork=true,size=37992,milestones={},language=Jupyter Notebook,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 20 Dec 2017 19:10:09 GMT], ETag=[W/"64f570c4381b168d45843cb46b914e7a"], Last-Modified=[Mon, 18 Dec 2017 12:03:31 GMT], OkHttp-Received-Millis=[1513797009148], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1513797008826], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[8262:4A53:5181BB:CA0ADF:5A3AB590], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4913], X-RateLimit-Reset=[1513798202], X-Runtime-rack=[0.067212], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:1bd4652) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/1bd46524b0c465e7e945a75fabb568bc1c376f49 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] scored: -10.0 [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: FAILURE