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Started by GitHub push by severinsimmler Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from https://github.com/DARIAH-DE/Topics > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 5a6d0fe85977b51c57f741a6a736bd432e3fee17 (refs/remotes/origin/testing) > git config core.sparsecheckout # timeout=10 > git checkout -f 5a6d0fe85977b51c57f741a6a736bd432e3fee17 Commit message: "Update result.html" > git rev-list 2341326303e5def732ca6ea57bca7569941733b8 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda4714168503025461423.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting nose (from -r requirements-dev.txt (line 2)) Using cached nose-1.3.7-py3-none-any.whl Collecting nosexcover (from -r requirements-dev.txt (line 3)) Using cached nosexcover-1.0.11-py2.py3-none-any.whl Collecting jupyter (from -r requirements-dev.txt (line 4)) Using cached jupyter-1.0.0-py2.py3-none-any.whl Collecting sphinx (from -r requirements-dev.txt (line 5)) Using cached Sphinx-1.6.5-py2.py3-none-any.whl Collecting nbsphinx (from -r requirements-dev.txt (line 6)) Downloading nbsphinx-0.2.17-py2.py3-none-any.whl Collecting recommonmark (from -r requirements-dev.txt (line 7)) Using cached recommonmark-0.4.0-py2.py3-none-any.whl Collecting pandas>=0.19.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.21.0-cp35-cp35m-manylinux1_x86_64.whl Collecting regex>=2017.01.14 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting gensim>=0.13.2 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting lda>=1.0.5 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached lda-1.0.5-cp35-cp35m-manylinux1_x86_64.whl Collecting numpy>=1.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl Collecting lxml>=3.6.4 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached lxml-4.1.1-cp35-cp35m-manylinux1_x86_64.whl Collecting flask>=0.11.1 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Flask-0.12.2-py2.py3-none-any.whl Collecting matplotlib>=1.5.3 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-2.1.0-cp35-cp35m-manylinux1_x86_64.whl Collecting bokeh>=0.12.6 (from dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting coverage>=3.4 (from nosexcover->-r requirements-dev.txt (line 3)) Using cached coverage-4.4.2-cp35-cp35m-manylinux1_x86_64.whl Collecting ipykernel (from jupyter->-r requirements-dev.txt (line 4)) Using cached ipykernel-4.6.1-py3-none-any.whl Collecting notebook (from jupyter->-r requirements-dev.txt (line 4)) Using cached notebook-5.2.1-py2.py3-none-any.whl Collecting nbconvert (from jupyter->-r requirements-dev.txt (line 4)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Collecting jupyter-console (from jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_console-5.2.0-py2.py3-none-any.whl Collecting ipywidgets (from jupyter->-r requirements-dev.txt (line 4)) Downloading ipywidgets-7.0.4-py2.py3-none-any.whl (68kB) Collecting qtconsole (from jupyter->-r requirements-dev.txt (line 4)) Using cached qtconsole-4.3.1-py2.py3-none-any.whl Requirement already up-to-date: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from sphinx->-r requirements-dev.txt (line 5)) Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 5)) Using cached alabaster-0.7.10-py2.py3-none-any.whl Collecting requests>=2.0.0 (from sphinx->-r requirements-dev.txt (line 5)) Using cached requests-2.18.4-py2.py3-none-any.whl Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 5)) Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Babel-2.5.1-py2.py3-none-any.whl Collecting imagesize (from sphinx->-r requirements-dev.txt (line 5)) Using cached imagesize-0.7.1-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from sphinx->-r requirements-dev.txt (line 5)) Using cached snowballstemmer-1.2.1-py2.py3-none-any.whl Collecting Jinja2>=2.3 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Jinja2-2.10-py2.py3-none-any.whl Collecting six>=1.5 (from sphinx->-r requirements-dev.txt (line 5)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting Pygments>=2.0 (from sphinx->-r requirements-dev.txt (line 5)) Using cached Pygments-2.2.0-py2.py3-none-any.whl Collecting docutils>=0.11 (from sphinx->-r requirements-dev.txt (line 5)) Using cached docutils-0.14-py3-none-any.whl Collecting nbformat (from nbsphinx->-r requirements-dev.txt (line 6)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting traitlets (from nbsphinx->-r requirements-dev.txt (line 6)) Using cached traitlets-4.3.2-py2.py3-none-any.whl Collecting commonmark<=0.5.4 (from recommonmark->-r requirements-dev.txt (line 7)) Collecting pytz>=2011k (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.3-py2.py3-none-any.whl Collecting python-dateutil>=2 (from pandas>=0.19.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Collecting scipy>=0.18.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting smart-open>=1.2.1 (from gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting pbr>=0.6 (from lda>=1.0.5->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pbr-3.1.1-py2.py3-none-any.whl Collecting click>=2.0 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached click-6.7-py2.py3-none-any.whl Collecting itsdangerous>=0.21 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting Werkzeug>=0.7 (from flask>=0.11.1->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached Werkzeug-0.12.2-py2.py3-none-any.whl Collecting cycler>=0.10 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib>=1.5.3->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached pyparsing-2.2.0-py2.py3-none-any.whl Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting ipython>=4.0.0 (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython-6.2.1-py3-none-any.whl Collecting jupyter-client (from ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_client-5.1.0-py2.py3-none-any.whl Collecting terminado>=0.3.3; sys_platform != "win32" (from notebook->jupyter->-r requirements-dev.txt (line 4)) Collecting ipython-genutils (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting jupyter-core (from notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached jupyter_core-4.4.0-py2.py3-none-any.whl Collecting bleach (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached bleach-2.1.1-py2.py3-none-any.whl Collecting testpath (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached testpath-0.3.1-py2.py3-none-any.whl Collecting entrypoints>=0.2.2 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Collecting mistune>=0.7.4 (from nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached mistune-0.8.1-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.0 (from jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting widgetsnbextension~=3.0.0 (from ipywidgets->jupyter->-r requirements-dev.txt (line 4)) Downloading widgetsnbextension-3.0.7-py2.py3-none-any.whl (2.2MB) Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached certifi-2017.11.5-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached idna-2.6-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->sphinx->-r requirements-dev.txt (line 5)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx->-r requirements-dev.txt (line 5)) Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsphinx->-r requirements-dev.txt (line 6)) Using cached jsonschema-2.6.0-py2.py3-none-any.whl Collecting decorator (from traitlets->nbsphinx->-r requirements-dev.txt (line 6)) Using cached decorator-4.1.2-py2.py3-none-any.whl Collecting bz2file (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Collecting boto>=2.32 (from smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==0.4.0.dev1->-r requirements.txt (line 1)) Using cached boto-2.48.0-py2.py3-none-any.whl Collecting pickleshare (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pickleshare-0.7.4-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached jedi-0.11.0-py2.py3-none-any.whl Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Downloading pexpect-4.3.0-py2.py3-none-any.whl (55kB) Collecting simplegeneric>0.8 (from ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Collecting pyzmq>=13 (from jupyter-client->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached pyzmq-16.0.3-cp35-cp35m-manylinux1_x86_64.whl Collecting ptyprocess (from terminado>=0.3.3; sys_platform != "win32"->notebook->jupyter->-r requirements-dev.txt (line 4)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached html5lib-1.0b10-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 4)) Using cached wcwidth-0.1.7-py2.py3-none-any.whl Collecting parso==0.1.0 (from jedi>=0.10->ipython>=4.0.0->ipykernel->jupyter->-r requirements-dev.txt (line 4)) Using cached parso-0.1.0-py2.py3-none-any.whl Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->jupyter->-r requirements-dev.txt (line 4)) Using cached webencodings-0.5.1-py2.py3-none-any.whl Installing collected packages: nose, coverage, nosexcover, pickleshare, parso, jedi, ptyprocess, pexpect, six, wcwidth, prompt-toolkit, Pygments, ipython-genutils, decorator, traitlets, simplegeneric, ipython, jupyter-core, pyzmq, python-dateutil, jupyter-client, tornado, ipykernel, terminado, jsonschema, nbformat, webencodings, html5lib, bleach, testpath, entrypoints, pandocfilters, mistune, MarkupSafe, Jinja2, nbconvert, notebook, jupyter-console, widgetsnbextension, ipywidgets, qtconsole, jupyter, alabaster, chardet, certifi, idna, urllib3, requests, sphinxcontrib-websupport, pytz, babel, imagesize, snowballstemmer, docutils, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, scipy, bz2file, boto, smart-open, gensim, pbr, lda, lxml, click, itsdangerous, Werkzeug, flask, cycler, pyparsing, matplotlib, PyYAML, bokeh, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Werkzeug-0.12.2 alabaster-0.7.10 babel-2.5.1 bleach-2.1.1 bokeh-0.12.10 boto-2.48.0 bz2file-0.98 certifi-2017.11.5 chardet-3.0.4 click-6.7 commonmark-0.5.4 coverage-4.4.2 cycler-0.10.0 dariah-topics decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 flask-0.12.2 gensim-3.1.0 html5lib-1.0b10 idna-2.6 imagesize-0.7.1 ipykernel-4.6.1 ipython-6.2.1 ipython-genutils-0.2.0 ipywidgets-7.0.4 itsdangerous-0.24 jedi-0.11.0 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.1.0 jupyter-console-5.2.0 jupyter-core-4.4.0 lda-1.0.5 lxml-4.1.1 matplotlib-2.1.0 mistune-0.8.1 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.17 nose-1.3.7 nosexcover-1.0.11 notebook-5.2.1 numpy-1.13.3 pandas-0.21.0 pandocfilters-1.4.2 parso-0.1.0 pbr-3.1.1 pexpect-4.3.0 pickleshare-0.7.4 prompt-toolkit-1.0.15 ptyprocess-0.5.2 pyparsing-2.2.0 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.3 qtconsole-4.3.1 recommonmark-0.4.0 regex-2017.11.9 requests-2.18.4 scipy-1.0.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.3 snowballstemmer-1.2.1 sphinx-1.6.5 sphinxcontrib-websupport-1.0.1 terminado-0.6 testpath-0.3.1 tornado-4.5.2 traitlets-4.3.2 urllib3-1.22 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.0.7 + ./setup.py sdist bdist_wheel running sdist running egg_info writing dariah_topics.egg-info/PKG-INFO writing top-level names to dariah_topics.egg-info/top_level.txt writing requirements to dariah_topics.egg-info/requires.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url creating dariah_topics-0.4.0.dev1 creating dariah_topics-0.4.0.dev1/dariah_topics creating dariah_topics-0.4.0.dev1/dariah_topics.egg-info creating dariah_topics-0.4.0.dev1/test copying files to dariah_topics-0.4.0.dev1... copying README.md -> dariah_topics-0.4.0.dev1 copying setup.cfg -> dariah_topics-0.4.0.dev1 copying setup.py -> dariah_topics-0.4.0.dev1 copying dariah_topics/__init__.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/doclist.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/mallet.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/meta.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/postprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-0.4.0.dev1/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-0.4.0.dev1/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-0.4.0.dev1/test Writing dariah_topics-0.4.0.dev1/setup.cfg Creating tar archive removing 'dariah_topics-0.4.0.dev1' (and everything under it) running bdist_wheel running build running build_py installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/model_creation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/meta.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/mallet.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/doclist.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-0.4.0.dev1.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-0.4.0.dev1-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/doclist.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/mallet.py' adding 'dariah_topics/meta.py' adding 'dariah_topics/model_creation.py' adding 'dariah_topics/postprocessing.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-0.4.0.dev1.dist-info/DESCRIPTION.rst' adding 'dariah_topics-0.4.0.dev1.dist-info/metadata.json' adding 'dariah_topics-0.4.0.dev1.dist-info/top_level.txt' adding 'dariah_topics-0.4.0.dev1.dist-info/WHEEL' adding 'dariah_topics-0.4.0.dev1.dist-info/METADATA' adding 'dariah_topics-0.4.0.dev1.dist-info/RECORD' + nosetests --cover-html ....../mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:739: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) ....../mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/bokeh/util/deprecation.py:34: BokehDeprecationWarning: responsive parameter was deprecated in Bokeh 0.12.10 and will be removed, use sizing_mode='fixed' for responsive=False or sizing_mode='scale_width' for responsive=True instead. warn(message) ...................... Name Stmts Miss Cover ----------------------------------------------------- dariah_topics/__init__.py 7 0 100% dariah_topics/doclist.py 93 8 91% dariah_topics/meta.py 57 31 46% dariah_topics/postprocessing.py 154 36 77% dariah_topics/preprocessing.py 229 16 93% dariah_topics/visualization.py 189 86 54% ----------------------------------------------------- TOTAL 729 177 76% ---------------------------------------------------------------------- Ran 34 tests in 58.464s OK + ./setup.py build_sphinx -a running build_sphinx Running Sphinx v1.6.5 loading pickled environment... not yet created [autosummary] generating autosummary for: CONTRIBUTING.md, IntroducingGensim.ipynb, IntroducingLda.ipynb, IntroducingMallet.ipynb, README.md, demonstrator/README.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst 'pattern' package not found; tag filters are not available for English WARNING: WordCloud functions not available, they require the wordcloud module loading intersphinx inventory from https://matplotlib.org/objects.inv... loading intersphinx inventory from https://radimrehurek.com/gensim/objects.inv... loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from http://docs.python.org/3/objects.inv... intersphinx inventory has moved: http://docs.python.org/3/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: all of 0 po files building [html]: all source files updating environment: 15 added, 0 changed, 0 removed reading sources... [ 6%] CONTRIBUTING reading sources... [ 13%] IntroducingGensim Notebook error: TypeError in IntroducingGensim.ipynb: Undefined is not JSON serializable + echo WARNING: Building the documentation failed WARNING: Building the documentation failed [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@5b23b84c[description=A Python library for Text Mining and Topic Modeling.,homepage=,name=Topics,license=<null>,fork=true,size=187688,milestones={},language=Jupyter Notebook,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 15 Nov 2017 15:11:12 GMT], ETag=[W/"bc3d7df93c9bb535b81cd5911c2f2ad4"], Last-Modified=[Tue, 31 Oct 2017 22:57:58 GMT], OkHttp-Received-Millis=[1510758672910], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1510758672730], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[AB70:29C7:58FAEE:AF3BB2:5A0C5910], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4988], X-RateLimit-Reset=[1510761660], X-Runtime-rack=[0.072059], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:5a6d0fe) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/5a6d0fe85977b51c57f741a6a736bd432e3fee17 ERROR: Build step failed with exception com.fasterxml.jackson.core.JsonParseException: Numeric value (4318019633) out of range of int at [Source: {"url":"https://api.github.com/repos/DARIAH-DE/Topics/statuses/5a6d0fe85977b51c57f741a6a736bd432e3fee17","id":4318019633,"state":"success","description":"Build #440 succeeded in 1 min 35 sec","target_url":"http://dev.digital-humanities.de/ci/job/DARIAH-Topics/440/display/redirect","context":"DARIAH-Topics","created_at":"2017-11-15T15:11:13Z","updated_at":"2017-11-15T15:11:13Z","creator":{"login":"thvitt","id":1906208,"avatar_url":"https://avatars2.githubusercontent.com/u/1906208?v=4","gravatar_id":"","url":"https://api.github.com/users/thvitt","html_url":"https://github.com/thvitt","followers_url":"https://api.github.com/users/thvitt/followers","following_url":"https://api.github.com/users/thvitt/following{/other_user}","gists_url":"https://api.github.com/users/thvitt/gists{/gist_id}","starred_url":"https://api.github.com/users/thvitt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thvitt/subscriptions","organizations_url":"https://api.github.com/users/thvitt/orgs","repos_url":"https://api.github.com/users/thvitt/repos","events_url":"https://api.github.com/users/thvitt/events{/privacy}","received_events_url":"https://api.github.com/users/thvitt/received_events","type":"User","site_admin":false}}; line: 1, column: 121] at com.fasterxml.jackson.core.JsonParser._constructError(JsonParser.java:1702) at com.fasterxml.jackson.core.base.ParserMinimalBase._reportError(ParserMinimalBase.java:558) at com.fasterxml.jackson.core.base.ParserBase.convertNumberToInt(ParserBase.java:928) at com.fasterxml.jackson.core.base.ParserBase._parseIntValue(ParserBase.java:866) at com.fasterxml.jackson.core.base.ParserBase.getIntValue(ParserBase.java:694) at com.fasterxml.jackson.databind.deser.std.NumberDeserializers$IntegerDeserializer.deserialize(NumberDeserializers.java:306) at com.fasterxml.jackson.databind.deser.std.NumberDeserializers$IntegerDeserializer.deserialize(NumberDeserializers.java:286) at com.fasterxml.jackson.databind.deser.SettableBeanProperty.deserialize(SettableBeanProperty.java:504) at com.fasterxml.jackson.databind.deser.impl.FieldProperty.deserializeAndSet(FieldProperty.java:108) at com.fasterxml.jackson.databind.deser.BeanDeserializer.vanillaDeserialize(BeanDeserializer.java:276) Caused: com.fasterxml.jackson.databind.JsonMappingException: Numeric value (4318019633) out of range of int at [Source: {"url":"https://api.github.com/repos/DARIAH-DE/Topics/statuses/5a6d0fe85977b51c57f741a6a736bd432e3fee17","id":4318019633,"state":"success","description":"Build #440 succeeded in 1 min 35 sec","target_url":"http://dev.digital-humanities.de/ci/job/DARIAH-Topics/440/display/redirect","context":"DARIAH-Topics","created_at":"2017-11-15T15:11:13Z","updated_at":"2017-11-15T15:11:13Z","creator":{"login":"thvitt","id":1906208,"avatar_url":"https://avatars2.githubusercontent.com/u/1906208?v=4","gravatar_id":"","url":"https://api.github.com/users/thvitt","html_url":"https://github.com/thvitt","followers_url":"https://api.github.com/users/thvitt/followers","following_url":"https://api.github.com/users/thvitt/following{/other_user}","gists_url":"https://api.github.com/users/thvitt/gists{/gist_id}","starred_url":"https://api.github.com/users/thvitt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thvitt/subscriptions","organizations_url":"https://api.github.com/users/thvitt/orgs","repos_url":"https://api.github.com/users/thvitt/repos","events_url":"https://api.github.com/users/thvitt/events{/privacy}","received_events_url":"https://api.github.com/users/thvitt/received_events","type":"User","site_admin":false}}; line: 1, column: 121] at [Source: {"url":"https://api.github.com/repos/DARIAH-DE/Topics/statuses/5a6d0fe85977b51c57f741a6a736bd432e3fee17","id":4318019633,"state":"success","description":"Build #440 succeeded in 1 min 35 sec","target_url":"http://dev.digital-humanities.de/ci/job/DARIAH-Topics/440/display/redirect","context":"DARIAH-Topics","created_at":"2017-11-15T15:11:13Z","updated_at":"2017-11-15T15:11:13Z","creator":{"login":"thvitt","id":1906208,"avatar_url":"https://avatars2.githubusercontent.com/u/1906208?v=4","gravatar_id":"","url":"https://api.github.com/users/thvitt","html_url":"https://github.com/thvitt","followers_url":"https://api.github.com/users/thvitt/followers","following_url":"https://api.github.com/users/thvitt/following{/other_user}","gists_url":"https://api.github.com/users/thvitt/gists{/gist_id}","starred_url":"https://api.github.com/users/thvitt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thvitt/subscriptions","organizations_url":"https://api.github.com/users/thvitt/orgs","repos_url":"https://api.github.com/users/thvitt/repos","events_url":"https://api.github.com/users/thvitt/events{/privacy}","received_events_url":"https://api.github.com/users/thvitt/received_events","type":"User","site_admin":false}}; line: 1, column: 111] (through reference chain: org.kohsuke.github.GHCommitStatus["id"]) at com.fasterxml.jackson.databind.JsonMappingException.wrapWithPath(JsonMappingException.java:388) at com.fasterxml.jackson.databind.JsonMappingException.wrapWithPath(JsonMappingException.java:348) at com.fasterxml.jackson.databind.deser.BeanDeserializerBase.wrapAndThrow(BeanDeserializerBase.java:1607) at com.fasterxml.jackson.databind.deser.BeanDeserializer.vanillaDeserialize(BeanDeserializer.java:278) at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserialize(BeanDeserializer.java:140) at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:3798) at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:2842) at org.kohsuke.github.Requester.parse(Requester.java:616) Caused: java.io.IOException: Failed to deserialize {"url":"https://api.github.com/repos/DARIAH-DE/Topics/statuses/5a6d0fe85977b51c57f741a6a736bd432e3fee17","id":4318019633,"state":"success","description":"Build #440 succeeded in 1 min 35 sec","target_url":"http://dev.digital-humanities.de/ci/job/DARIAH-Topics/440/display/redirect","context":"DARIAH-Topics","created_at":"2017-11-15T15:11:13Z","updated_at":"2017-11-15T15:11:13Z","creator":{"login":"thvitt","id":1906208,"avatar_url":"https://avatars2.githubusercontent.com/u/1906208?v=4","gravatar_id":"","url":"https://api.github.com/users/thvitt","html_url":"https://github.com/thvitt","followers_url":"https://api.github.com/users/thvitt/followers","following_url":"https://api.github.com/users/thvitt/following{/other_user}","gists_url":"https://api.github.com/users/thvitt/gists{/gist_id}","starred_url":"https://api.github.com/users/thvitt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thvitt/subscriptions","organizations_url":"https://api.github.com/users/thvitt/orgs","repos_url":"https://api.github.com/users/thvitt/repos","events_url":"https://api.github.com/users/thvitt/events{/privacy}","received_events_url":"https://api.github.com/users/thvitt/received_events","type":"User","site_admin":false}} at org.kohsuke.github.Requester.parse(Requester.java:618) Caused: org.kohsuke.github.HttpException: Server returned HTTP response code: 201, message: 'Created' for URL: https://api.github.com/repos/DARIAH-DE/Topics/statuses/5a6d0fe85977b51c57f741a6a736bd432e3fee17 at org.kohsuke.github.Requester.parse(Requester.java:633) at org.kohsuke.github.Requester.parse(Requester.java:594) at org.kohsuke.github.Requester._to(Requester.java:272) at org.kohsuke.github.Requester.to(Requester.java:234) at org.kohsuke.github.GHRepository.createCommitStatus(GHRepository.java:1071) at org.jenkinsci.plugins.github.status.GitHubCommitStatusSetter.perform(GitHubCommitStatusSetter.java:160) Caused: org.jenkinsci.plugins.github.common.CombineErrorHandler$ErrorHandlingException at org.jenkinsci.plugins.github.common.CombineErrorHandler.handle(CombineErrorHandler.java:74) at org.jenkinsci.plugins.github.status.GitHubCommitStatusSetter.perform(GitHubCommitStatusSetter.java:164) at hudson.tasks.BuildStepCompatibilityLayer.perform(BuildStepCompatibilityLayer.java:81) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:736) at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:682) at hudson.model.Build$BuildExecution.post2(Build.java:186) at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:627) at hudson.model.Run.execute(Run.java:1762) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43) at hudson.model.ResourceController.execute(ResourceController.java:97) at hudson.model.Executor.run(Executor.java:421) Build step 'Set GitHub commit status (universal)' marked build as failure [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] scored: -10.0 [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: FAILURE