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Started by GitHub push by severinsimmler Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/DARIAH-Topics > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/DARIAH-DE/Topics # timeout=10 Fetching upstream changes from git://github.com/DARIAH-DE/Topics > /usr/bin/git --version # timeout=10 using GIT_ASKPASS to set credentials > /usr/bin/git fetch --tags --progress git://github.com/DARIAH-DE/Topics +refs/heads/*:refs/remotes/origin/* > /usr/bin/git rev-parse refs/remotes/origin/testing^{commit} # timeout=10 > /usr/bin/git rev-parse refs/remotes/origin/origin/testing^{commit} # timeout=10 Checking out Revision 2a59757e78a6f2cdde84398c35c40cd79f5917cc (refs/remotes/origin/testing) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 2a59757e78a6f2cdde84398c35c40cd79f5917cc Commit message: "Release v1.0.2" > /usr/bin/git rev-list --no-walk 9b8a627b639c8e530eabbb8243a35b3e4a94af58 # timeout=10 [DARIAH-Topics] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python3 Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [DARIAH-Topics] $ /bin/sh -xe /tmp/shiningpanda3349145027334074561.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (10.0.1) + pip install -U -r requirements-dev.txt Obtaining file:///mnt/data/jenkins/workspace/DARIAH-Topics (from -r requirements.txt (line 1)) Collecting pytest (from -r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/d3/75/e79b66c9fe6166a90004bb8fb02bab06213c3348e93f3be41d7eaf625554/pytest-3.6.1-py2.py3-none-any.whl Collecting pytest-cov (from -r requirements-dev.txt (line 5)) Using cached https://files.pythonhosted.org/packages/30/7d/7f6a78ae44a1248ee28cc777586c18b28a1df903470e5d34a6e25712b8aa/pytest_cov-2.5.1-py2.py3-none-any.whl Collecting nbsmoke (from -r requirements-dev.txt (line 6)) Using cached 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Collecting numpy>=1.3 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/43/17/cd9fa14492dbef2aaf22622db79dba087c10f125473e730cda2f2019c40b/numpy-1.14.5-cp35-cp35m-manylinux1_x86_64.whl Collecting lxml>=3.6.4 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/30/65/6dcc7a1a0ec3bbc10a1316b3610f9997ca132183a5f5345c5b88fc1eaf79/lxml-4.2.1-cp35-cp35m-manylinux1_x86_64.whl Collecting matplotlib>=1.5.3 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/81/31/4e261379e0cd4e9bbacfc96b124ebac0706b44374bd1d34ef899796f741b/matplotlib-2.2.2-cp35-cp35m-manylinux1_x86_64.whl Collecting bokeh>=0.12.6 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting metadata_toolbox (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting cophi_toolbox>=0.1.1.dev0 (from dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting attrs>=17.4.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/41/59/cedf87e91ed541be7957c501a92102f9cc6363c623a7666d69d51c78ac5b/attrs-18.1.0-py2.py3-none-any.whl Collecting pluggy<0.7,>=0.5 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/ba/65/ded3bc40bbf8d887f262f150fbe1ae6637765b5c9534bd55690ed2c0b0f7/pluggy-0.6.0-py3-none-any.whl Collecting more-itertools>=4.0.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/85/40/90c3b0393e12b9827381004224de8814686e3d7182f9d4182477f600826d/more_itertools-4.2.0-py3-none-any.whl Collecting atomicwrites>=1.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/0a/e8/cd6375e7a59664eeea9e1c77a766eeac0fc3083bb958c2b41ec46b95f29c/atomicwrites-1.1.5-py2.py3-none-any.whl Collecting six>=1.10.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl Collecting py>=1.5.0 (from pytest->-r requirements-dev.txt (line 4)) Using cached https://files.pythonhosted.org/packages/67/a5/f77982214dd4c8fd104b066f249adea2c49e25e8703d284382eb5e9ab35a/py-1.5.3-py2.py3-none-any.whl Requirement not upgraded as not directly required: setuptools in /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages (from pytest->-r requirements-dev.txt (line 4)) (39.2.0) Collecting coverage>=3.7.1 (from pytest-cov->-r requirements-dev.txt (line 5)) Using cached https://files.pythonhosted.org/packages/2c/c0/8047b7cbbcdbd7d21f8d68126196b7915da892c5af3d1a99dba082d33ec0/coverage-4.5.1-cp35-cp35m-manylinux1_x86_64.whl Collecting beautifulsoup4 (from nbsmoke->-r requirements-dev.txt (line 6)) Using cached 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https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl Collecting packaging (from sphinx->-r requirements-dev.txt (line 10)) Using cached https://files.pythonhosted.org/packages/ad/c2/b500ea05d5f9f361a562f089fc91f77ed3b4783e13a08a3daf82069b1224/packaging-17.1-py2.py3-none-any.whl Collecting imagesize (from sphinx->-r requirements-dev.txt (line 10)) Using cached https://files.pythonhosted.org/packages/e9/79/31cc1c2e0daf575f8fd2b581e2975e6a6938bd439581f766b79c50479521/imagesize-1.0.0-py2.py3-none-any.whl Collecting alabaster<0.8,>=0.7 (from sphinx->-r requirements-dev.txt (line 10)) Using cached https://files.pythonhosted.org/packages/2e/c3/9b7dcd8548cf2c00531763ba154e524af575e8f36701bacfe5bcadc67440/alabaster-0.7.10-py2.py3-none-any.whl Collecting sphinxcontrib-websupport (from sphinx->-r requirements-dev.txt (line 10)) Using cached 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matplotlib>=1.5.3->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/6a/8a/718fd7d3458f9fab8e67186b00abdd345b639976bc7fb3ae722e1b026a50/pyparsing-2.2.0-py2.py3-none-any.whl Collecting tornado>=4.3 (from bokeh>=0.12.6->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting PyYAML>=3.10 (from bokeh>=0.12.6->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting parse>=1.8.2 (from metadata_toolbox->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Collecting ipython>=4.0.0 (from ipykernel->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/b1/7f/91d50f28af3e3a24342561983a7857e399ce24093876e6970b986a0b6677/ipython-6.4.0-py3-none-any.whl Collecting jupyter-core (from jupyter-client->nbsmoke->-r requirements-dev.txt (line 6)) Using cached 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cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl Collecting urllib3<1.24,>=1.21.1 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl Collecting idna<2.8,>=2.5 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/4b/2a/0276479a4b3caeb8a8c1af2f8e4355746a97fab05a372e4a2c6a6b876165/idna-2.7-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl Collecting testpath (from nbconvert->nbsmoke->-r requirements-dev.txt (line 6)) Using cached 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html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/a5/62/bbd2be0e7943ec8504b517e62bab011b4946e1258842bc159e5dfde15b96/html5lib-1.0.1-py2.py3-none-any.whl Collecting wcwidth (from prompt-toolkit<2.0.0,>=1.0.0->jupyter-console->jupyter->-r requirements-dev.txt (line 9)) Using cached https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl Collecting ptyprocess; os_name != "nt" (from terminado>=0.8.1->notebook->jupyter->-r requirements-dev.txt (line 9)) Using cached https://files.pythonhosted.org/packages/ff/4e/fa4a73ccfefe2b37d7b6898329e7dbcd1ac846ba3a3b26b294a78a3eb997/ptyprocess-0.5.2-py2.py3-none-any.whl Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/b7/31/05c8d001f7f87f0f07289a5fc0fc3832e9a57f2dbd4d3b0fee70e0d51365/jmespath-0.9.3-py2.py3-none-any.whl Collecting s3transfer<0.2.0,>=0.1.10 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/d7/14/2a0004d487464d120c9fb85313a75cd3d71a7506955be458eebfe19a6b1d/s3transfer-0.1.13-py2.py3-none-any.whl Collecting botocore<1.11.0,>=1.10.37 (from boto3->smart-open>=1.2.1->gensim>=0.13.2->dariah-topics==1.0.2.dev0->-r requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/0b/97/60eba2ca866d346459bfb6f95ff5b2b611d7b1b844d0733acb436d59c893/botocore-1.10.37-py2.py3-none-any.whl Collecting parso>=0.2.0 (from jedi>=0.10->ipython>=4.0.0->ipykernel->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/cd/3e/5908f9577dbd1e5df53e64349bfd11e46b726c1e4d8cd676bbe8aa4de316/parso-0.2.1-py2.py3-none-any.whl Collecting webencodings (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->nbsmoke->-r requirements-dev.txt (line 6)) Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl Building wheels for collected packages: nbsphinx Running setup.py bdist_wheel for nbsphinx: started Running setup.py bdist_wheel for nbsphinx: finished with status 'done' Stored in directory: /tmp/pip-ephem-wheel-cache-0ua_srb4/wheels/a3/7b/ff/b71160a2e088926eb13abcf8e0cde94c0aa8400c67d3df57f5 Successfully built nbsphinx Installing collected packages: attrs, pluggy, six, more-itertools, atomicwrites, py, pytest, coverage, pytest-cov, beautifulsoup4, tornado, decorator, parso, jedi, ipython-genutils, traitlets, wcwidth, prompt-toolkit, backcall, pickleshare, Pygments, ptyprocess, pexpect, simplegeneric, ipython, python-dateutil, jupyter-core, pyzmq, jupyter-client, ipykernel, pyflakes, jsonschema, nbformat, chardet, urllib3, idna, certifi, requests, testpath, pandocfilters, MarkupSafe, Jinja2, webencodings, html5lib, bleach, mistune, entrypoints, nbconvert, nbsmoke, qtconsole, jupyter-console, Send2Trash, terminado, notebook, widgetsnbextension, ipywidgets, jupyter, pyparsing, packaging, imagesize, alabaster, sphinxcontrib-websupport, snowballstemmer, docutils, pytz, babel, sphinx, nbsphinx, commonmark, recommonmark, numpy, pandas, regex, jmespath, botocore, s3transfer, boto3, boto, bz2file, smart-open, scipy, gensim, pbr, lda, lxml, cycler, kiwisolver, matplotlib, PyYAML, bokeh, parse, metadata-toolbox, cophi-toolbox, dariah-topics Running setup.py develop for dariah-topics Successfully installed Jinja2-2.10 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 Send2Trash-1.5.0 alabaster-0.7.10 atomicwrites-1.1.5 attrs-18.1.0 babel-2.6.0 backcall-0.1.0 beautifulsoup4-4.6.0 bleach-2.1.3 bokeh-0.12.16 boto-2.48.0 boto3-1.7.37 botocore-1.10.37 bz2file-0.98 certifi-2018.4.16 chardet-3.0.4 commonmark-0.5.4 cophi-toolbox-0.1.1.dev0 coverage-4.5.1 cycler-0.10.0 dariah-topics decorator-4.3.0 docutils-0.14 entrypoints-0.2.3 gensim-3.4.0 html5lib-1.0.1 idna-2.7 imagesize-1.0.0 ipykernel-4.8.2 ipython-6.4.0 ipython-genutils-0.2.0 ipywidgets-7.2.1 jedi-0.12.0 jmespath-0.9.3 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.3 jupyter-console-5.2.0 jupyter-core-4.4.0 kiwisolver-1.0.1 lda-1.0.5 lxml-4.2.1 matplotlib-2.2.2 metadata-toolbox-0.1.0.dev0 mistune-0.8.3 more-itertools-4.2.0 nbconvert-5.3.1 nbformat-4.4.0 nbsmoke-0.2.7 nbsphinx-0.3.3 notebook-5.5.0 numpy-1.14.5 packaging-17.1 pandas-0.23.1 pandocfilters-1.4.2 parse-1.8.4 parso-0.2.1 pbr-4.0.4 pexpect-4.6.0 pickleshare-0.7.4 pluggy-0.6.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 py-1.5.3 pyflakes-2.0.0 pyparsing-2.2.0 pytest-3.6.1 pytest-cov-2.5.1 python-dateutil-2.7.3 pytz-2018.4 pyzmq-17.0.0 qtconsole-4.3.1 recommonmark-0.4.0 regex-2018.6.9 requests-2.19.0 s3transfer-0.1.13 scipy-1.1.0 simplegeneric-0.8.1 six-1.11.0 smart-open-1.5.7 snowballstemmer-1.2.1 sphinx-1.7.5 sphinxcontrib-websupport-1.1.0 terminado-0.8.1 testpath-0.3.1 tornado-5.0.2 traitlets-4.3.2 urllib3-1.23 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.2.1 + ./setup.py sdist bdist_wheel running sdist running egg_info writing requirements to dariah_topics.egg-info/requires.txt writing top-level names to dariah_topics.egg-info/top_level.txt writing dependency_links to dariah_topics.egg-info/dependency_links.txt writing dariah_topics.egg-info/PKG-INFO reading manifest file 'dariah_topics.egg-info/SOURCES.txt' writing manifest file 'dariah_topics.egg-info/SOURCES.txt' running check creating dariah_topics-1.0.2.dev0 creating dariah_topics-1.0.2.dev0/dariah_topics creating dariah_topics-1.0.2.dev0/dariah_topics.egg-info creating dariah_topics-1.0.2.dev0/test copying files to dariah_topics-1.0.2.dev0... copying README.md -> dariah_topics-1.0.2.dev0 copying setup.cfg -> dariah_topics-1.0.2.dev0 copying setup.py -> dariah_topics-1.0.2.dev0 copying dariah_topics/__init__.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/evaluation.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/modeling.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/postprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/preprocessing.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/utils.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics/visualization.py -> dariah_topics-1.0.2.dev0/dariah_topics copying dariah_topics.egg-info/PKG-INFO -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/SOURCES.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/dependency_links.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/requires.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying dariah_topics.egg-info/top_level.txt -> dariah_topics-1.0.2.dev0/dariah_topics.egg-info copying test/test_fuzzy_segmenting.py -> dariah_topics-1.0.2.dev0/test Writing dariah_topics-1.0.2.dev0/setup.cfg Creating tar archive removing 'dariah_topics-1.0.2.dev0' (and everything under it) running bdist_wheel running build running build_py copying dariah_topics/postprocessing.py -> build/lib/dariah_topics installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/modeling.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/preprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/utils.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/postprocessing.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/evaluation.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/__init__.py -> build/bdist.linux-x86_64/wheel/dariah_topics copying build/lib/dariah_topics/visualization.py -> build/bdist.linux-x86_64/wheel/dariah_topics running install_egg_info Copying dariah_topics.egg-info to build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0-py3.5.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dariah_topics-1.0.2.dev0.dist-info/WHEEL creating '/mnt/data/jenkins/workspace/DARIAH-Topics/dist/dariah_topics-1.0.2.dev0-py3-none-any.whl' and adding '.' to it adding 'dariah_topics/__init__.py' adding 'dariah_topics/evaluation.py' adding 'dariah_topics/modeling.py' adding 'dariah_topics/postprocessing.py' adding 'dariah_topics/preprocessing.py' adding 'dariah_topics/utils.py' adding 'dariah_topics/visualization.py' adding 'dariah_topics-1.0.2.dev0.dist-info/top_level.txt' adding 'dariah_topics-1.0.2.dev0.dist-info/WHEEL' adding 'dariah_topics-1.0.2.dev0.dist-info/METADATA' adding 'dariah_topics-1.0.2.dev0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.2.dev' to '1.0.2.dev0' normalized_version, + pytest --nbsmoke-run ============================= test session starts ============================== platform linux -- Python 3.5.3, pytest-3.6.1, py-1.5.3, pluggy-0.6.0 rootdir: /mnt/data/jenkins/workspace/DARIAH-Topics, inifile: setup.cfg plugins: cov-2.5.1, nbsmoke-0.2.7 collected 57 items dariah_topics/postprocessing.py ........... [ 19%] dariah_topics/preprocessing.py ........................... [ 66%] dariah_topics/utils.py ...... [ 77%] notebooks/IntroducingGensim.ipynb . [ 78%] notebooks/IntroducingLda.ipynb . [ 80%] notebooks/IntroducingMallet.ipynb . [ 82%] notebooks/Visualizations.ipynb . [ 84%] test/test_fuzzy_segmenting.py ......... [100%] --- generated xml file: /mnt/data/jenkins/workspace/DARIAH-Topics/tests.xml ---- ----------- coverage: platform linux, python 3.5.3-final-0 ----------- Coverage HTML written to dir htmlcov Coverage XML written to file coverage.xml =============================== warnings summary =============================== dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_document_topics /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead. """ dariah_topics/postprocessing.py::dariah_topics.postprocessing._show_lda_topics /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/postprocessing.py:1: FutureWarning: Method .as_matrix will be removed in a future version. Use .values instead. """ dariah_topics/postprocessing.py::dariah_topics.postprocessing.doc2bow /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/postprocessing.py::dariah_topics.postprocessing.save_document_term_matrix /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/cophi_toolbox/preprocessing.py:625: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._create_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._hapax_legomena_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._list_mfw_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing._remove_features_from_large_corpus_model /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.create_document_term_matrix /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.find_hapax_legomena /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.list_mfw /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) dariah_topics/preprocessing.py::dariah_topics.preprocessing.remove_features /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:732: FutureWarning: set_value is deprecated and will be removed in a future release. Please use .at[] or .iat[] accessors instead document_term_matrix.set_value((document_id, type_id), 0, int(bag_of_words[document_id][type_id])) -- Docs: http://doc.pytest.org/en/latest/warnings.html =================== 57 passed, 12 warnings in 80.25 seconds ==================== + ./setup.py build_sphinx -a running build_sphinx Running Sphinx v1.7.5 loading pickled environment... done [autosummary] generating autosummary for: README.md, docs/CONTRIBUTING.md, docs/gen/dariah_topics.doclist.rst, docs/gen/dariah_topics.evaluation.rst, docs/gen/dariah_topics.mallet.rst, docs/gen/dariah_topics.meta.rst, docs/gen/dariah_topics.preprocessing.rst, docs/gen/dariah_topics.rst, docs/gen/dariah_topics.visualization.rst, docs/gen/modules.rst, index.rst, notebooks/IntroducingGensim.ipynb, notebooks/IntroducingLda.ipynb, notebooks/IntroducingMallet.ipynb, notebooks/Visualizations.ipynb Failed to import 'dariah_topics.meta': no module named dariah_topics.meta Failed to import 'dariah_topics.doclist': no module named dariah_topics.doclist Failed to import 'dariah_topics.mallet': no module named dariah_topics.mallet building [mo]: all of 0 po files building [html]: all source files updating environment: [config changed] 15 added, 0 changed, 0 removed reading sources... [ 6%] README reading sources... [ 13%] docs/CONTRIBUTING reading sources... [ 20%] docs/gen/dariah_topics reading sources... [ 26%] docs/gen/dariah_topics.doclist reading sources... [ 33%] docs/gen/dariah_topics.evaluation reading sources... [ 40%] docs/gen/dariah_topics.mallet reading sources... [ 46%] docs/gen/dariah_topics.meta reading sources... [ 53%] docs/gen/dariah_topics.preprocessing reading sources... [ 60%] docs/gen/dariah_topics.visualization reading sources... [ 66%] docs/gen/modules reading sources... [ 73%] index reading sources... [ 80%] notebooks/IntroducingGensim reading sources... [ 86%] notebooks/IntroducingLda reading sources... [ 93%] notebooks/IntroducingMallet reading sources... [100%] notebooks/Visualizations /mnt/data/jenkins/shiningpanda/jobs/62c67c92/virtualenvs/d41d8cd9/lib/python3.5/site-packages/setuptools/dist.py:398: UserWarning: Normalizing '1.0.2.dev' to '1.0.2.dev0' normalized_version, WARNING: autodoc: failed to import module 'dariah_topics.doclist'; the following exception was raised: No module named 'dariah_topics.doclist' WARNING: autodoc: failed to import module 'dariah_topics.mallet'; the following exception was raised: No module named 'dariah_topics.mallet' WARNING: autodoc: failed to import module 'dariah_topics.meta'; the following exception was raised: No module named 'dariah_topics.meta' /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_files:12: WARNING: Inline literal start-string without end-string. /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/preprocessing.py:docstring of dariah_topics.preprocessing.read_model:3: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:9: WARNING: Unknown interpreted text role "clas". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:10: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:11: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:12: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:13: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:14: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:15: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:16: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/dariah_topics/visualization.py:docstring of dariah_topics.visualization:17: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingLda' /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingGensim' /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'IntroducingMallet' /mnt/data/jenkins/workspace/DARIAH-Topics/index.rst:4: WARNING: toctree contains reference to nonexisting document 'demonstrator/README' /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:867: WARNING: Title level inconsistent: Path to MALLET folder ^^^^^^^^^^^^^^^^^^^^^ looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/Visualizations.ipynb: WARNING: document isn't included in any toctree done preparing documents... done writing output... 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[100%] notebooks/Visualizations <unknown>:14: WARNING: unknown document: /notebooks/introducinglda <unknown>:15: WARNING: unknown document: /notebooks/introducingmallet <unknown>:16: WARNING: unknown document: /notebooks/introducinggensim /mnt/data/jenkins/workspace/DARIAH-Topics/docs/CONTRIBUTING.md: WARNING: Could not lex literal_block as "json". Highlighting skipped. /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:53: WARNING: unknown document: /notebooks/introducingmallet /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingGensim.ipynb:56: WARNING: unknown document: /notebooks/introducinglda /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:52: WARNING: unknown document: /notebooks/introducingmallet /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingLda.ipynb:55: WARNING: unknown document: /notebooks/introducinggensim /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:52: WARNING: unknown document: /notebooks/introducinggensim /mnt/data/jenkins/workspace/DARIAH-Topics/notebooks/IntroducingMallet.ipynb:55: WARNING: unknown document: /notebooks/introducinglda generating indices... genindex py-modindex highlighting module code... [ 33%] dariah_topics.evaluation highlighting module code... [ 66%] dariah_topics.preprocessing highlighting module code... [100%] dariah_topics.visualization writing additional pages... search copying images... [ 12%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_22_0.png copying images... [ 25%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingMallet_62_0.png copying images... [ 37%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_24_0.png copying images... [ 50%] docs/images/bmbf_logo.png copying images... [ 62%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingGensim_53_0.png copying images... [ 75%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_IntroducingLda_58_0.png copying images... [ 87%] docs/images/dariah-de_logo.png copying images... [100%] notebooks/../build/sphinx/doctrees/nbsphinx/notebooks_Visualizations_20_0.png copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/DARIAH-Topics/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 35 warnings. The HTML pages are in build/sphinx/html. [DocLinks] Copying Documentation to 1 ... Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@3992d344[description=A Python library for topic modeling.,homepage=https://dariah-de.github.io/Topics,name=Topics,fork=true,size=42324,milestones={},language=Python,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 13 Jun 2018 16:28:23 GMT], ETag=[W/"5b6737146dbd6994d29e5e98b7cc254f"], Last-Modified=[Wed, 13 Jun 2018 16:23:41 GMT], OkHttp-Received-Millis=[1528907303169], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1528907302969], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[9D0C:0FE3:626A6C:C83540:5B214626], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4975], X-RateLimit-Reset=[1528909730], X-Runtime-rack=[0.090262], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/DARIAH-DE/Topics,id=69341969]] (sha:2a59757) with context:DARIAH-Topics Setting commit status on GitHub for https://github.com/DARIAH-DE/Topics/commit/2a59757e78a6f2cdde84398c35c40cd79f5917cc Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion [ci-game] evaluating rule: Build result [ci-game] scored: 1.0 [ci-game] evaluating rule: Increased number of passed tests [ci-game] evaluating rule: Decreased number of passed tests [ci-game] evaluating rule: Increased number of failed tests [ci-game] evaluating rule: Decreased number of failed tests [ci-game] evaluating rule: Increased number of skipped tests [ci-game] evaluating rule: Decreased number of skipped tests [ci-game] evaluating rule: Open HIGH priority tasks [ci-game] evaluating rule: Open NORMAL priority tasks [ci-game] evaluating rule: Open LOW priority tasks [ci-game] evaluating rule: Changed number of compiler warnings Finished: SUCCESS