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Started by GitHub push by thvitt Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/pydelta-next Cloning the remote Git repository Cloning repository https://github.com/cophi-wue/pydelta > git init /mnt/data/jenkins/workspace/pydelta-next # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/next^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/next^{commit} # timeout=10 Checking out Revision f07331328a302cdbb866b01a29c4361bcc5a17c9 (refs/remotes/origin/next) > git config core.sparsecheckout # timeout=10 > git checkout -f f07331328a302cdbb866b01a29c4361bcc5a17c9 Commit message: "The KMedoids warning doesn't need exception info" > git rev-list f9e12b0d0e32d49c66dee735fea09bae284f0f84 # timeout=10 No emails were triggered. [pydelta-next] $ /bin/sh -xe /tmp/shiningpanda8288498962007368448.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages + pip install -U numpy scipy Cython Collecting numpy Using cached numpy-1.14.0-cp35-cp35m-manylinux1_x86_64.whl Collecting scipy Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting Cython Downloading Cython-0.27.3-cp35-cp35m-manylinux1_x86_64.whl (3.0MB) Installing collected packages: numpy, scipy, Cython Found existing installation: numpy 1.12.1 Uninstalling numpy-1.12.1: Successfully uninstalled numpy-1.12.1 Found existing installation: scipy 0.19.0 Uninstalling scipy-0.19.0: Successfully uninstalled scipy-0.19.0 Found existing installation: Cython 0.25.2 Uninstalling Cython-0.25.2: Successfully uninstalled Cython-0.25.2 Successfully installed Cython-0.27.3 numpy-1.14.0 scipy-1.0.0 + pip install -U -r requirements.txt Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Requirement already up-to-date: Cython in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 3)) Requirement already up-to-date: nose in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 8)) Requirement already up-to-date: nose-progressive in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 9)) Requirement already up-to-date: nosexcover in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 10)) Collecting Sphinx (from -r requirements.txt (line 11)) Using cached Sphinx-1.6.6-py2.py3-none-any.whl Collecting ipykernel (from -r requirements.txt (line 12)) Using cached ipykernel-4.8.0-py3-none-any.whl Collecting nbsphinx (from -r requirements.txt (line 13)) Downloading nbsphinx-0.3.1-py2.py3-none-any.whl Requirement already up-to-date: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting matplotlib>=1.3.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached matplotlib-2.1.2-cp35-cp35m-manylinux1_x86_64.whl Requirement already up-to-date: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting pandas>=0.13.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.22.0-cp35-cp35m-manylinux1_x86_64.whl Collecting scikit-learn>=0.16.0 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Downloading scikit_learn-0.19.1-cp35-cp35m-manylinux1_x86_64.whl (12.2MB) Collecting regex (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting blessings<2.0,>=1.3 (from nose-progressive->-r requirements.txt (line 9)) Downloading blessings-1.6.1-py3-none-any.whl Collecting coverage>=3.4 (from nosexcover->-r requirements.txt (line 10)) Using cached coverage-4.4.2-cp35-cp35m-manylinux1_x86_64.whl Requirement already up-to-date: snowballstemmer>=1.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Collecting babel!=2.0,>=1.3 (from Sphinx->-r requirements.txt (line 11)) Using cached Babel-2.5.3-py2.py3-none-any.whl Collecting docutils>=0.11 (from Sphinx->-r requirements.txt (line 11)) Using cached docutils-0.14-py3-none-any.whl Collecting Jinja2>=2.3 (from Sphinx->-r requirements.txt (line 11)) Using cached Jinja2-2.10-py2.py3-none-any.whl Requirement already up-to-date: Pygments>=2.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Requirement already up-to-date: alabaster<0.8,>=0.7 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Requirement already up-to-date: imagesize in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Collecting sphinxcontrib-websupport (from Sphinx->-r requirements.txt (line 11)) Using cached sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl Collecting requests>=2.0.0 (from Sphinx->-r requirements.txt (line 11)) Using cached requests-2.18.4-py2.py3-none-any.whl Collecting six>=1.5 (from Sphinx->-r requirements.txt (line 11)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting setuptools (from Sphinx->-r requirements.txt (line 11)) Using cached setuptools-38.4.0-py2.py3-none-any.whl Requirement already up-to-date: traitlets>=4.1.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipykernel->-r requirements.txt (line 12)) Collecting jupyter-client (from ipykernel->-r requirements.txt (line 12)) Downloading jupyter_client-5.2.2-py2.py3-none-any.whl (88kB) Collecting ipython>=4.0.0 (from ipykernel->-r requirements.txt (line 12)) Using cached ipython-6.2.1-py3-none-any.whl Collecting tornado>=4.0 (from ipykernel->-r requirements.txt (line 12)) Collecting nbconvert (from nbsphinx->-r requirements.txt (line 13)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Collecting nbformat (from nbsphinx->-r requirements.txt (line 13)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting python-dateutil>=2.1 (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Requirement already up-to-date: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: cycler>=0.10 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting pytz (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pytz-2017.3-py2.py3-none-any.whl Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Jinja2>=2.3->Sphinx->-r requirements.txt (line 11)) Collecting certifi>=2017.4.17 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached certifi-2018.1.18-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached idna-2.6-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting decorator (from traitlets>=4.1.0->ipykernel->-r requirements.txt (line 12)) Using cached decorator-4.2.1-py2.py3-none-any.whl Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from traitlets>=4.1.0->ipykernel->-r requirements.txt (line 12)) Collecting jupyter-core (from jupyter-client->ipykernel->-r requirements.txt (line 12)) Using cached jupyter_core-4.4.0-py2.py3-none-any.whl Collecting pyzmq>=13 (from jupyter-client->ipykernel->-r requirements.txt (line 12)) Downloading pyzmq-16.0.4-cp35-cp35m-manylinux1_x86_64.whl (3.1MB) Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Collecting prompt-toolkit<2.0.0,>=1.0.4 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting pexpect; sys_platform != "win32" (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached pexpect-4.3.1-py2.py3-none-any.whl Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached jedi-0.11.1-py2.py3-none-any.whl Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Collecting entrypoints>=0.2.2 (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting bleach (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Using cached bleach-2.1.2-py2.py3-none-any.whl Collecting testpath (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Using cached testpath-0.3.1-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Collecting mistune>=0.7.4 (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Using cached mistune-0.8.3-py2.py3-none-any.whl Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbformat->nbsphinx->-r requirements.txt (line 13)) Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.4->ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Collecting ptyprocess>=0.5 (from pexpect; sys_platform != "win32"->ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting parso==0.1.1 (from jedi>=0.10->ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached parso-0.1.1-py2.py3-none-any.whl Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->nbsphinx->-r requirements.txt (line 13)) Using cached html5lib-1.0.1-py2.py3-none-any.whl Requirement already up-to-date: webencodings in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->nbsphinx->-r requirements.txt (line 13)) Installing collected packages: pytz, babel, docutils, Jinja2, sphinxcontrib-websupport, certifi, urllib3, idna, chardet, requests, six, setuptools, Sphinx, jupyter-core, python-dateutil, tornado, pyzmq, jupyter-client, prompt-toolkit, decorator, ptyprocess, pexpect, parso, jedi, ipython, ipykernel, entrypoints, html5lib, bleach, nbformat, testpath, pandocfilters, mistune, nbconvert, nbsphinx, matplotlib, pandas, scikit-learn, regex, delta, blessings, coverage Found existing installation: pytz 2017.2 Uninstalling pytz-2017.2: Successfully uninstalled pytz-2017.2 Found existing installation: Babel 2.4.0 Uninstalling Babel-2.4.0: Successfully uninstalled Babel-2.4.0 Found existing installation: docutils 0.13.1 Uninstalling docutils-0.13.1: Successfully uninstalled docutils-0.13.1 Found existing installation: Jinja2 2.9.6 Uninstalling Jinja2-2.9.6: Successfully uninstalled Jinja2-2.9.6 Found existing installation: requests 2.13.0 Uninstalling requests-2.13.0: Successfully uninstalled requests-2.13.0 Found existing installation: six 1.10.0 Uninstalling six-1.10.0: Successfully uninstalled six-1.10.0 Found existing installation: setuptools 35.0.1 Uninstalling setuptools-35.0.1: Successfully uninstalled setuptools-35.0.1 Found existing installation: Sphinx 1.5.5 Uninstalling Sphinx-1.5.5: Successfully uninstalled Sphinx-1.5.5 Found existing installation: jupyter-core 4.3.0 Uninstalling jupyter-core-4.3.0: Successfully uninstalled jupyter-core-4.3.0 Found existing installation: python-dateutil 2.6.0 Uninstalling python-dateutil-2.6.0: Successfully uninstalled python-dateutil-2.6.0 Found existing installation: tornado 4.5 Uninstalling tornado-4.5: Successfully uninstalled tornado-4.5 Found existing installation: pyzmq 16.0.2 Uninstalling pyzmq-16.0.2: Successfully uninstalled pyzmq-16.0.2 Found existing installation: jupyter-client 5.0.1 Uninstalling jupyter-client-5.0.1: Successfully uninstalled jupyter-client-5.0.1 Found existing installation: prompt-toolkit 1.0.14 Uninstalling prompt-toolkit-1.0.14: Successfully uninstalled prompt-toolkit-1.0.14 Found existing installation: decorator 4.0.11 Uninstalling decorator-4.0.11: Successfully uninstalled decorator-4.0.11 Found existing installation: ptyprocess 0.5.1 Uninstalling ptyprocess-0.5.1: Successfully uninstalled ptyprocess-0.5.1 Found existing installation: pexpect 4.2.1 Uninstalling pexpect-4.2.1: Successfully uninstalled pexpect-4.2.1 Found existing installation: ipython 5.3.0 Uninstalling ipython-5.3.0: Successfully uninstalled ipython-5.3.0 Found existing installation: ipykernel 4.6.1 Uninstalling ipykernel-4.6.1: Successfully uninstalled ipykernel-4.6.1 Found existing installation: entrypoints 0.2.2 Uninstalling entrypoints-0.2.2: Successfully uninstalled entrypoints-0.2.2 Found existing installation: html5lib 0.999999999 Uninstalling html5lib-0.999999999: Successfully uninstalled html5lib-0.999999999 Found existing installation: bleach 2.0.0 Uninstalling bleach-2.0.0: Successfully uninstalled bleach-2.0.0 Found existing installation: nbformat 4.3.0 Uninstalling nbformat-4.3.0: Successfully uninstalled nbformat-4.3.0 Found existing installation: testpath 0.3 Uninstalling testpath-0.3: Successfully uninstalled testpath-0.3 Found existing installation: pandocfilters 1.4.1 Uninstalling pandocfilters-1.4.1: Successfully uninstalled pandocfilters-1.4.1 Found existing installation: mistune 0.7.4 Uninstalling mistune-0.7.4: Successfully uninstalled mistune-0.7.4 Found existing installation: nbconvert 5.1.1 Uninstalling nbconvert-5.1.1: Successfully uninstalled nbconvert-5.1.1 Found existing installation: nbsphinx 0.2.13 Uninstalling nbsphinx-0.2.13: Successfully uninstalled nbsphinx-0.2.13 Found existing installation: matplotlib 2.0.0 Uninstalling matplotlib-2.0.0: Successfully uninstalled matplotlib-2.0.0 Found existing installation: pandas 0.19.2 Uninstalling pandas-0.19.2: Successfully uninstalled pandas-0.19.2 Found existing installation: scikit-learn 0.19.dev0 Uninstalling scikit-learn-0.19.dev0: Successfully uninstalled scikit-learn-0.19.dev0 Found existing installation: regex 2017.4.5 Uninstalling regex-2017.4.5: Successfully uninstalled regex-2017.4.5 Found existing installation: delta 2.0.0.dev1 Uninstalling delta-2.0.0.dev1: Successfully uninstalled delta-2.0.0.dev1 Running setup.py develop for delta Found existing installation: blessings 1.6 Uninstalling blessings-1.6: Successfully uninstalled blessings-1.6 Found existing installation: coverage 4.3.4 Uninstalling coverage-4.3.4: Successfully uninstalled coverage-4.3.4 Successfully installed Jinja2-2.10 Sphinx-1.6.6 babel-2.5.3 bleach-2.1.2 blessings-1.6.1 certifi-2018.1.18 chardet-3.0.4 coverage-4.4.2 decorator-4.2.1 delta docutils-0.14 entrypoints-0.2.3 html5lib-1.0.1 idna-2.6 ipykernel-4.8.0 ipython-6.2.1 jedi-0.11.1 jupyter-client-5.2.2 jupyter-core-4.4.0 matplotlib-2.1.2 mistune-0.8.3 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.3.1 pandas-0.22.0 pandocfilters-1.4.2 parso-0.1.1 pexpect-4.3.1 prompt-toolkit-1.0.15 ptyprocess-0.5.2 python-dateutil-2.6.1 pytz-2017.3 pyzmq-16.0.4 regex-2018.1.10 requests-2.18.4 scikit-learn-0.19.1 setuptools-38.4.0 six-1.11.0 sphinxcontrib-websupport-1.0.1 testpath-0.3.1 tornado-4.5.3 urllib3-1.22 + ./setup.py sdist bdist running sdist running egg_info writing top-level names to delta.egg-info/top_level.txt writing requirements to delta.egg-info/requires.txt writing delta.egg-info/PKG-INFO writing dependency_links to delta.egg-info/dependency_links.txt reading manifest file 'delta.egg-info/SOURCES.txt' writing manifest file 'delta.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url warning: check: missing meta-data: if 'author' supplied, 'author_email' must be supplied too creating delta-2.0.0.dev1 creating delta-2.0.0.dev1/delta creating delta-2.0.0.dev1/delta.egg-info copying files to delta-2.0.0.dev1... copying README.rst -> delta-2.0.0.dev1 copying setup.cfg -> delta-2.0.0.dev1 copying setup.py -> delta-2.0.0.dev1 copying delta/__init__.py -> delta-2.0.0.dev1/delta copying delta/cluster.py -> delta-2.0.0.dev1/delta copying delta/corpus.py -> delta-2.0.0.dev1/delta copying delta/deltas.py -> delta-2.0.0.dev1/delta copying delta/experiments.py -> delta-2.0.0.dev1/delta copying delta/features.py -> delta-2.0.0.dev1/delta copying delta/graphics.py -> delta-2.0.0.dev1/delta copying delta/util.py -> delta-2.0.0.dev1/delta copying delta.egg-info/PKG-INFO -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/SOURCES.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/dependency_links.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/requires.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/top_level.txt -> delta-2.0.0.dev1/delta.egg-info Writing delta-2.0.0.dev1/setup.cfg creating dist Creating tar archive removing 'delta-2.0.0.dev1' (and everything under it) running bdist running bdist_dumb running build running build_py creating build creating build/lib creating build/lib/delta copying delta/features.py -> build/lib/delta copying delta/graphics.py -> build/lib/delta copying delta/experiments.py -> build/lib/delta copying delta/corpus.py -> build/lib/delta copying delta/cluster.py -> build/lib/delta copying delta/util.py -> build/lib/delta copying delta/deltas.py -> build/lib/delta copying delta/__init__.py -> build/lib/delta installing to build/bdist.linux-x86_64/dumb running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/dumb creating build/bdist.linux-x86_64/dumb/mnt creating build/bdist.linux-x86_64/dumb/mnt/data creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/features.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/graphics.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/experiments.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/corpus.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/cluster.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/util.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/deltas.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/__init__.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/features.py to features.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/graphics.py to graphics.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/experiments.py to experiments.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/corpus.py to corpus.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/cluster.py to cluster.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/util.py to util.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/deltas.py to deltas.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/__init__.py to __init__.cpython-35.pyc running install_egg_info Copying delta.egg-info to build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta-2.0.0.dev1-py3.5.egg-info running install_scripts Creating tar archive removing 'build/bdist.linux-x86_64/dumb' (and everything under it) + ./setup.py build_sphinx running build_sphinx creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/doctrees creating /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html Running Sphinx v1.6.6 loading pickled environment... not yet created loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/2/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: 9 added, 0 changed, 0 removed reading sources... [ 11%] CustomizingPipeline reading sources... [ 22%] GettingStarted reading sources... [ 33%] README reading sources... [ 44%] README-branch reading sources... [ 55%] concept reading sources... [ 66%] delta KMedoids clustering not available. You need a patched scikit-learn, see README.txt reading sources... [ 77%] index reading sources... [ 88%] modules reading sources... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") /mnt/data/jenkins/workspace/pydelta-next/docs/CustomizingPipeline.ipynb:2368: WARNING: Explicit markup ends without a blank line; unexpected unindent. /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: WARNING: Unknown interpreted text role "function". /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param". /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:8: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:12: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:59: WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7fec6a714f98>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7fec6d412378>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.MetricDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7fec65037840>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__ /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: WARNING: Unexpected indentation. /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 11%] CustomizingPipeline writing output... [ 22%] GettingStarted writing output... [ 33%] README writing output... [ 44%] README-branch writing output... [ 55%] concept writing output... [ 66%] delta writing output... [ 77%] index writing output... [ 88%] modules writing output... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:40: WARNING: undefined label: /delta.html#delta.corpus.corpus (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:293: WARNING: undefined label: /delta.html#corpus.corpus.relative_frequencies (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:293: WARNING: 'any' reference target not found: the :math:`n /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:293: WARNING: undefined label: /delta.html#corpus.corpus.get_mfw_table (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:320: WARNING: undefined label: /delta.html#deltas.distancematrix (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:481: WARNING: undefined label: /delta.rst#cluster.clustering (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:500: WARNING: undefined label: /delta.html#graph.dendrogram (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:500: WARNING: undefined label: /delta.html#corpus.documentdescriber (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:661: WARNING: undefined label: /delta.rst#cluster.flatclustering (if the link has no caption the label must precede a section header) /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:16: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:: WARNING: 'any' reference target not found: f /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry generating indices... genindex py-modindex highlighting module code... [ 20%] delta.cluster highlighting module code... [ 40%] delta.util highlighting module code... [ 60%] delta.graphics highlighting module code... [ 80%] delta.corpus highlighting module code... [100%] delta.deltas writing additional pages... search copying images... [ 33%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_11_0.png copying images... [ 66%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png copying images... [100%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_22_0.png copying static files... WARNING: html_static_path entry '/mnt/data/jenkins/workspace/pydelta-next/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 37 warnings. + nosetests /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") .../mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:323: UserWarning: Pandas doesn't allow columns to be created via a new attribute name - see https://pandas.pydata.org/pandas-docs/stable/indexing.html#attribute-access self.metadata = metadata /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:627: UserWarning: Pandas doesn't allow columns to be created via a new attribute name - see https://pandas.pydata.org/pandas-docs/stable/indexing.html#attribute-access self.metadata = Metadata(metadata, **kwargs) /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:622: UserWarning: Pandas doesn't allow columns to be created via a new attribute name - see https://pandas.pydata.org/pandas-docs/stable/indexing.html#attribute-access self.metadata = copy_from.metadata ........./mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/pandas/io/parsers.py:449: ParserWarning: Conflicting values for 'delimiter': ' ' was provided, but the dialect specifies ','. Using the dialect-specified value. parser = TextFileReader(filepath_or_buffer, **kwds) ....... Name Stmts Miss Cover ------------------------------------------ delta/__init__.py 16 1 94% delta/cluster.py 116 24 79% delta/corpus.py 187 67 64% delta/deltas.py 363 136 63% delta/experiments.py 2 0 100% delta/features.py 19 14 26% delta/graphics.py 85 66 22% delta/util.py 108 24 78% ------------------------------------------ TOTAL 896 332 63% ---------------------------------------------------------------------- Ran 19 tests in 8.083s OK [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results [Cobertura] Publishing Cobertura coverage report... [Cobertura] Publishing Cobertura coverage results... [Cobertura] Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@6df4a1d4[description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,fork=true,size=2975,milestones={},language=Jupyter Notebook,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 25 Jan 2018 13:33:03 GMT], ETag=[W/"55a70ba8a53cd2161e221ec037ba6bb6"], Last-Modified=[Mon, 04 Dec 2017 14:32:11 GMT], OkHttp-Received-Millis=[1516887183587], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1516887183376], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[9FFA:218D:8F46E1:13892E7:5A69DC8F], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4949], X-RateLimit-Reset=[1516887322], X-Runtime-rack=[0.102483], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971]] (sha:f073313) with context:pydelta-next Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/f07331328a302cdbb866b01a29c4361bcc5a17c9 Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion No emails were triggered. Finished: SUCCESS