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Console Output

Started by user Thorsten Vitt
Running as SYSTEM
Building remotely on Rechenknecht in workspace /mnt/data/jenkins/workspace/pydelta-next
The recommended git tool is: NONE
using credential Github
 > /usr/bin/git rev-parse --resolve-git-dir /mnt/data/jenkins/workspace/pydelta-next/.git # timeout=10
Fetching changes from the remote Git repository
 > /usr/bin/git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10
Fetching upstream changes from https://github.com/cophi-wue/pydelta
 > /usr/bin/git --version # timeout=10
 > git --version # 'git version 2.11.0'
using GIT_ASKPASS to set credentials 
 > /usr/bin/git fetch --tags --progress -- https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/next^{commit} # timeout=10
Checking out Revision 1a6856e11aac9aab473c39dbf363668f51a594ff (refs/remotes/origin/next)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 1a6856e11aac9aab473c39dbf363668f51a594ff # timeout=10
Commit message: "Allow parallel parsing of corpus files"
 > /usr/bin/git rev-list --no-walk 1a6856e11aac9aab473c39dbf363668f51a594ff # timeout=10
No emails were triggered.
$ bash -c "[ -d \$HOME/.pyenv ]"
$ bash -c "cd /mnt/data/jenkins/workspace/pydelta-next && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true"
$ bash -c "mkdir \$HOME/.pyenv.lock"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv versions --bare"
Updating pyenv...
$ bash -c "cd \$HOME/.pyenv && git checkout master && git pull"
Already on 'master'
Your branch is up-to-date with 'origin/master'.
From https://github.com/yyuu/pyenv
   806b30d6..1706436f  master     -> origin/master
 * [new tag]           1.2.24     -> 1.2.24
 * [new tag]           1.2.24.1   -> 1.2.24.1
 * [new tag]           1.2.25     -> 1.2.25
 * [new tag]           1.2.26     -> 1.2.26
 * [new tag]           1.2.27     -> 1.2.27
 * [new tag]           v1.2.22    -> v1.2.22
 * [new tag]           v1.2.23    -> v1.2.23
 * [new tag]           v1.2.24    -> v1.2.24
 * [new tag]           v1.2.24.1  -> v1.2.24.1
 * [new tag]           v1.2.25    -> v1.2.25
 * [new tag]           v1.2.26    -> v1.2.26
 * [new tag]           v2.0.0     -> v2.0.0
 * [new tag]           v2.0.0-rc1 -> v2.0.0-rc1
 * [new tag]           v2.0.1     -> v2.0.1
Updating 806b30d6..1706436f
Fast-forward
 .dockerignore                                      |   4 +
 .github/PULL_REQUEST_TEMPLATE.md                   |   2 +-
 .github/no-response.yml                            |  13 +
 .github/workflows/ubuntu_tests.yml                 |  42 ++
 .travis.yml                                        |  13 +-
 CHANGELOG.md                                       | 109 ++++
 COMMANDS.md                                        |   2 +
 Dockerfile                                         |  35 ++
 README.md                                          | 283 +++++++----
 libexec/pyenv                                      |  23 +-
 libexec/pyenv---version                            |   2 +-
 libexec/pyenv-help                                 |   6 +-
 libexec/pyenv-hooks                                |   2 +-
 libexec/pyenv-init                                 | 220 ++++++---
 libexec/pyenv-prefix                               |   4 +-
 libexec/pyenv-rehash                               |  98 ++--
 libexec/pyenv-sh-shell                             |   4 +-
 libexec/pyenv-version-file-read                    |   2 +-
 libexec/pyenv-versions                             |  30 +-
 libexec/pyenv-which                                |  12 +-
 plugins/python-build/README.md                     |  48 ++
 plugins/python-build/bin/pyenv-install             |   7 +-
 plugins/python-build/bin/python-build              | 113 +++--
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 .../share/python-build/graalpython-20.2.0          |   2 +-
 .../share/python-build/graalpython-20.3.0          |  48 ++
 .../share/python-build/graalpython-21.0.0          |  48 ++
 .../share/python-build/graalpython-21.1.0          |  48 ++
 .../share/python-build/mambaforge-4.10.1-4         |  22 +
 .../share/python-build/micropython-1.14            |   5 +
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 .../share/python-build/miniconda3-3.7-4.8.2        |  19 +
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 .../share/python-build/miniconda3-latest           |   6 +-
 .../share/python-build/miniforge3-4.10             |  25 +
 .../share/python-build/miniforge3-4.10.1-1         |  25 +
 .../share/python-build/miniforge3-4.10.1-3         |  25 +
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 plugins/python-build/share/python-build/pypy-1.5   |  24 -
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 plugins/python-build/share/python-build/pypy-2.4.0 |   2 +-
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 plugins/python-build/share/python-build/pypy-4.0.0 |   4 +-
 plugins/python-build/share/python-build/pypy-4.0.1 |  18 +-
 plugins/python-build/share/python-build/pypy-5.0.1 |   2 +-
 plugins/python-build/share/python-build/pypy-5.1.1 |  10 +-
 .../share/python-build/pypy-c-jit-latest           |  14 +-
 .../share/python-build/pypy-c-nojit-latest         |  35 --
 plugins/python-build/share/python-build/pypy-dev   |   2 +-
 .../python-build/share/python-build/pypy2.7-6.0.0  |   9 +-
 .../python-build/share/python-build/pypy3.5-5.10.1 |   2 +-
 .../share/python-build/pypy3.5-5.7-beta            |   2 +-
 .../python-build/share/python-build/pypy3.5-5.8.0  |   2 +-
 .../python-build/share/python-build/pypy3.5-6.0.0  |   1 -
 .../share/python-build/pypy3.5-c-jit-latest        |  52 +-
 .../python-build/share/python-build/pypy3.6-7.3.2  |  39 ++
 .../share/python-build/pypy3.6-7.3.2-src           |   4 +
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 .../share/python-build/pypy3.6-7.3.3-src           |   4 +
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 .../share/python-build/pypy3.7-7.3.2-src           |   4 +
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 .../share/python-build/pypy3.7-7.3.4-src           |   4 +
 .../python-build/share/python-build/pypy3.7-7.3.5  |  40 ++
 .../share/python-build/pypy3.7-7.3.5-src           |   4 +
 .../share/python-build/pypy3.7-c-jit-latest        |  39 ++
 .../python-build/share/python-build/pyston-0.5.1   |  23 -
 .../python-build/share/python-build/pyston-0.6.0   |  23 -
 .../python-build/share/python-build/pyston-0.6.1   |  30 --
 plugins/python-build/share/python-build/pyston-2.2 |  19 +
 .../share/python-build/stackless-2.7.10            |   2 +-
 .../share/python-build/stackless-2.7.11            |   2 +-
 .../share/python-build/stackless-2.7.12            |   2 +-
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 .../share/python-build/stackless-2.7.2             |   2 +-
 .../share/python-build/stackless-2.7.3             |   2 +-
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 .../share/python-build/stackless-2.7.7             |   2 +-
 .../share/python-build/stackless-2.7.8             |   2 +-
 .../share/python-build/stackless-2.7.9             |   2 +-
 .../share/python-build/stackless-3.2.2             |   2 +-
 .../share/python-build/stackless-3.2.5             |   2 +-
 .../share/python-build/stackless-3.3.5             |   2 +-
 .../share/python-build/stackless-3.3.7             |   2 +-
 .../share/python-build/stackless-3.4.1             |   4 -
 .../share/python-build/stackless-3.4.2             |   2 +-
 .../share/python-build/stackless-3.4.7             |   2 +-
 .../share/python-build/stackless-3.5.4             |   2 +-
 .../share/python-build/stackless-3.7.5             |   2 +-
 plugins/python-build/test/build.bats               |  13 -
 plugins/python-build/test/installer.bats           |   2 +-
 plugins/python-build/test/pyenv.bats               |  11 -
 plugins/python-build/test/pyenv_ext.bats           |  32 +-
 plugins/python-build/test/test_helper.bash         |   2 +-
 pyenv.1                                            | 547 +++++++++++++++++++++
 pyenv.d/install/latest.bash                        |   7 +
 pyenv.d/rehash/conda.bash                          |   4 +-
 test/exec.bats                                     |  18 +-
 test/init.bats                                     |  17 +-
 test/pyenv_ext.bats                                |  25 -
 test/shell.bats                                    |   4 +-
 test/version-file-read.bats                        |  12 +
 test/versions.bats                                 |   7 +
 250 files changed, 2590 insertions(+), 788 deletions(-)
 create mode 100644 .dockerignore
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 create mode 100644 plugins/python-build/share/python-build/graalpython-21.1.0
 create mode 100644 plugins/python-build/share/python-build/mambaforge-4.10.1-4
 create mode 100644 plugins/python-build/share/python-build/micropython-1.14
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 create mode 100644 pyenv.d/install/latest.bash
Updated pyenv.
Installing 3.9.5...
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv install 3.9.5"
Downloading Python-3.9.5.tar.xz...
-> https://www.python.org/ftp/python/3.9.5/Python-3.9.5.tar.xz
Installing Python-3.9.5...
Installed Python-3.9.5 to /mnt/data/jenkins/.pyenv/versions/3.9.5

Installed 3.9.5.
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv exec pip list"
Installing tox...
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv exec pip install tox"
Collecting tox
  Downloading tox-3.23.1-py2.py3-none-any.whl (85 kB)
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Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.4.7-py2.py3-none-any.whl (7.2 MB)
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Installing collected packages: six, pyparsing, filelock, distlib, appdirs, virtualenv, toml, py, pluggy, packaging, tox
Successfully installed appdirs-1.4.4 distlib-0.3.2 filelock-3.0.12 packaging-20.9 pluggy-0.13.1 py-1.10.0 pyparsing-2.4.7 six-1.16.0 toml-0.10.2 tox-3.23.1 virtualenv-20.4.7
WARNING: You are using pip version 21.1.1; however, version 21.1.2 is available.
You should consider upgrading via the '/mnt/data/jenkins/.pyenv/versions/3.9.5/bin/python3.9 -m pip install --upgrade pip' command.
Installed tox.
$ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.9.5 \$HOME/.pyenv/bin/pyenv rehash"
$ bash -c "rm -rf \$HOME/.pyenv.lock"
[pydelta-next] $ /usr/bin/python3 /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenv.py /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/d41d8cd9
Using base prefix '/usr'
New python executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/d41d8cd9/bin/python3
Also creating executable in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[pydelta-next] $ /bin/sh -xe /tmp/shiningpanda886905476486330364.sh
+ pip install -r requirements.txt
Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1))
Collecting Cython
  Downloading Cython-0.29.23-cp39-cp39-manylinux1_x86_64.whl (1.9 MB)
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Requirement already satisfied: pyparsing>=2.2.1 in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) (2.4.7)
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Requirement already satisfied: six in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from cycler>=0.10->matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) (1.16.0)
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Requirement already satisfied: py>=1.8.2 in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (1.10.0)
Requirement already satisfied: pluggy<1.0.0a1,>=0.12 in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (0.13.1)
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Requirement already satisfied: packaging in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 8)) (20.9)
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Requirement already satisfied: setuptools in /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages (from Sphinx->-r requirements.txt (line 10)) (56.0.0)
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Collecting jedi>=0.16
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Collecting entrypoints>=0.2.2
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Collecting pyzmq>=13
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Collecting jsonschema!=2.5.0,>=2.4
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Collecting webencodings
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Using legacy 'setup.py install' for pandocfilters, since package 'wheel' is not installed.
Using legacy 'setup.py install' for pyrsistent, since package 'wheel' is not installed.
Installing collected packages: ipython-genutils, traitlets, pyrsistent, attrs, tornado, pyzmq, python-dateutil, jupyter-core, jsonschema, webencodings, wcwidth, urllib3, pytz, Pygments, ptyprocess, parso, numpy, nest-asyncio, nbformat, MarkupSafe, jupyter-client, idna, chardet, certifi, async-generator, threadpoolctl, testpath, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, scipy, requests, prompt-toolkit, pillow, pickleshare, pexpect, pandocfilters, nbclient, mistune, matplotlib-inline, kiwisolver, jupyterlab-pygments, joblib, Jinja2, jedi, iniconfig, imagesize, entrypoints, docutils, defusedxml, decorator, cycler, bleach, backcall, babel, alabaster, Sphinx, scikit-learn, regex, pytest, pandas, nbconvert, matplotlib, ipython, coverage, pytest-cov, nbsphinx, ipykernel, delta, Cython
    Running setup.py install for pyrsistent: started
    Running setup.py install for pyrsistent: finished with status 'done'
    Running setup.py install for pandocfilters: started
    Running setup.py install for pandocfilters: finished with status 'done'
  Running setup.py develop for delta
Successfully installed Cython-0.29.23 Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.9.0 Sphinx-4.0.2 alabaster-0.7.12 async-generator-1.10 attrs-21.2.0 babel-2.9.1 backcall-0.2.0 bleach-3.3.0 certifi-2021.5.30 chardet-4.0.0 coverage-5.5 cycler-0.10.0 decorator-5.0.9 defusedxml-0.7.1 delta-2.0.0.dev1 docutils-0.17.1 entrypoints-0.3 idna-2.10 imagesize-1.2.0 iniconfig-1.1.1 ipykernel-5.5.5 ipython-7.24.1 ipython-genutils-0.2.0 jedi-0.18.0 joblib-1.0.1 jsonschema-3.2.0 jupyter-client-6.1.12 jupyter-core-4.7.1 jupyterlab-pygments-0.1.2 kiwisolver-1.3.1 matplotlib-3.4.2 matplotlib-inline-0.1.2 mistune-0.8.4 nbclient-0.5.3 nbconvert-6.0.7 nbformat-5.1.3 nbsphinx-0.8.6 nest-asyncio-1.5.1 numpy-1.20.3 pandas-1.2.4 pandocfilters-1.4.3 parso-0.8.2 pexpect-4.8.0 pickleshare-0.7.5 pillow-8.2.0 prompt-toolkit-3.0.18 ptyprocess-0.7.0 pyrsistent-0.17.3 pytest-6.2.4 pytest-cov-2.12.1 python-dateutil-2.8.1 pytz-2021.1 pyzmq-22.1.0 regex-2021.4.4 requests-2.25.1 scikit-learn-0.24.2 scipy-1.6.3 snowballstemmer-2.1.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 testpath-0.5.0 threadpoolctl-2.1.0 tornado-6.1 traitlets-5.0.5 urllib3-1.26.5 wcwidth-0.2.5 webencodings-0.5.1
WARNING: You are using pip version 21.1.1; however, version 21.1.2 is available.
You should consider upgrading via the '/mnt/data/jenkins/.pyenv/versions/3.9.5/bin/python3.9 -m pip install --upgrade pip' command.
+ ./setup.py build_sphinx
running build_sphinx
Running Sphinx v4.0.2
WARNING: html_static_path entry '_static' does not exist
loading pickled environment... failed
failed: <lambda>() missing 1 required positional argument: 'aliased'
loading intersphinx inventory from http://docs.python.org/objects.inv...
loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv...
intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
intersphinx inventory has moved: http://pandas.pydata.org/pandas-docs/stable/objects.inv -> https://pandas.pydata.org/pandas-docs/stable/objects.inv
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
reading sources... [ 11%] CustomizingPipeline
reading sources... [ 22%] GettingStarted
reading sources... [ 33%] README
reading sources... [ 44%] README-branch
reading sources... [ 55%] concept
reading sources... [ 66%] delta
KMedoids clustering not available.
You need a patched scikit-learn, see README.txt
/mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available
  warn("KMedoidsClustering not available")
reading sources... [ 77%] index
reading sources... [ 88%] modules
reading sources... [100%] refactoring-notes

/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:48: WARNING: File not found: 'delta.html#delta.corpus.Corpus'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.relative_frequencies'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:346: WARNING: File not found: 'delta.html#corpus.Corpus.get_mfw_table'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:379: WARNING: File not found: 'delta.html#deltas.DistanceMatrix'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#graph.Dendrogram'
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:637: WARNING: File not found: 'delta.html#corpus.DocumentDescriber'
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:67: WARNING: Unknown interpreted text role "function".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param".
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.metadata:3: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:11: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:13: WARNING: Inline strong start-string without end-string.
/mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module".
WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7efbcb208130>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7efbcb1ffe50>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.MetricDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7efbac007550>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:9: WARNING: Unexpected indentation.
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree
/mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 11%] CustomizingPipeline
writing output... [ 22%] GettingStarted
writing output... [ 33%] README
writing output... [ 44%] README-branch
writing output... [ 55%] concept
writing output... [ 66%] delta
writing output... [ 77%] index
writing output... [ 88%] modules
writing output... [100%] refactoring-notes

/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:616: WARNING: undefined label: /delta.rst#cluster.clustering
/mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:803: WARNING: undefined label: /delta.rst#cluster.flatclustering
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize
/mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator:1: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:9: WARNING: 'any' reference target not found: subdir
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:11: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:6: WARNING: 'any' reference target not found: mfwords
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:16: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.PreprocessingDeltaFunction:7: WARNING: 'any' reference target not found: f
/mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry
generating indices... genindex py-modindex done
copying notebooks ... [ 50%] CustomizingPipeline.ipynb
copying notebooks ... [100%] GettingStarted.ipynb

highlighting module code... [ 20%] delta.cluster
highlighting module code... [ 40%] delta.corpus
highlighting module code... [ 60%] delta.deltas
highlighting module code... [ 80%] delta.graphics
highlighting module code... [100%] delta.util

writing additional pages... search done
copying images... [ 33%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_11_0.png
copying images... [ 66%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_22_0.png
copying images... [100%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 37 warnings.

The HTML pages are in build/sphinx/html.
+ pytest
============================= test session starts ==============================
platform linux -- Python 3.9.5, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
rootdir: /mnt/data/jenkins/workspace/pydelta-next, configfile: setup.cfg
plugins: cov-2.12.1
collected 23 items

delta/util.py ...                                                        [ 13%]
test/corpus_test.py ...........                                          [ 60%]
test/deltas_test.py ......                                               [ 86%]
test/test_issue6.py ...                                                  [100%]

=============================== warnings summary ===============================
delta/corpus.py:12
  /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:12: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
    from collections import Mapping

delta/__init__.py:35
  /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available
    warn("KMedoidsClustering not available")

../../.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py:1233
  /mnt/data/jenkins/.pyenv/versions/3.9.5/lib/python3.9/site-packages/_pytest/config/__init__.py:1233: PytestConfigWarning: Unknown config option: nb_diff_ignore
  
    self._warn_or_fail_if_strict(f"Unknown config option: {key}\n")

-- Docs: https://docs.pytest.org/en/stable/warnings.html
--- generated xml file: /mnt/data/jenkins/workspace/pydelta-next/pytest.xml ----
======================== 23 passed, 3 warnings in 3.99s ========================
[htmlpublisher] Archiving HTML reports...
[htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation
Recording test results
[Checks API] No suitable checks publisher found.
[Cobertura] Publishing Cobertura coverage report...

[Cobertura] Publishing Cobertura coverage results...

[Cobertura] Cobertura coverage report found.

[Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@4c3a1765[nodeId=MDEwOlJlcG9zaXRvcnk4NDYzMzk3MQ==,description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,fork=true,archived=false,size=3005,milestones={},language=Jupyter Notebook,commits={},isTemplate=<null>,url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971,nodeId=<null>,createdAt=2017-03-11T08:03:36Z,updatedAt=2021-06-13T16:30:40Z]] (sha:1a6856e) with context:pydelta-next
Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/1a6856e11aac9aab473c39dbf363668f51a594ff
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Notifying upstream projects of job completion
No emails were triggered.
Finished: SUCCESS