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Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/pydelta-next > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/next^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/next^{commit} # timeout=10 Checking out Revision 6347461130bbaea993fd65d05a81aa082c8219d5 (refs/remotes/origin/next) Commit message: "Merge remote-tracking branch 'andbue/next' into next" > git config core.sparsecheckout # timeout=10 > git checkout -f 6347461130bbaea993fd65d05a81aa082c8219d5 > git rev-list 917ca95010e15f47d7f1d1b6e00263b448d9ac20 # timeout=10 No emails were triggered. [pydelta-next] $ /bin/sh -xe /tmp/shiningpanda8181135151187319516.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages + pip install -U numpy scipy Cython Collecting numpy Using cached numpy-1.13.1-cp35-cp35m-manylinux1_x86_64.whl Collecting scipy Using cached scipy-0.19.1-cp35-cp35m-manylinux1_x86_64.whl Collecting Cython Downloading Cython-0.27-cp35-cp35m-manylinux1_x86_64.whl (3.1MB) Installing collected packages: numpy, scipy, Cython Found existing installation: numpy 1.12.1 Uninstalling numpy-1.12.1: Successfully uninstalled numpy-1.12.1 Found existing installation: scipy 0.19.0 Uninstalling scipy-0.19.0: Successfully uninstalled scipy-0.19.0 Found existing installation: Cython 0.25.2 Uninstalling Cython-0.25.2: Successfully uninstalled Cython-0.25.2 Successfully installed Cython-0.27 numpy-1.13.1 scipy-0.19.1 + pip install -U -r requirements.txt Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Requirement already up-to-date: Cython in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 3)) Collecting scikit_learn from git+https://github.com/Kornel/scikit-learn@tk-kmedoids#egg=scikit_learn (from -r requirements.txt (line 5)) Cloning https://github.com/Kornel/scikit-learn (to tk-kmedoids) to /tmp/pip-build-tb0rrmax/scikit-learn Requirement already up-to-date: nose in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 7)) Requirement already up-to-date: nose-progressive in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 8)) Requirement already up-to-date: nosexcover in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 9)) Collecting Sphinx (from -r requirements.txt (line 10)) Downloading Sphinx-1.6.4-py2.py3-none-any.whl (1.9MB) Requirement already up-to-date: ipykernel in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 11)) Collecting nbsphinx (from -r requirements.txt (line 12)) Downloading nbsphinx-0.2.14-py2.py3-none-any.whl Requirement already up-to-date: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: matplotlib>=1.3.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting pandas>=0.13.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.20.3-cp35-cp35m-manylinux1_x86_64.whl Collecting regex (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Downloading regex-2017.09.23.tar.gz (607kB) Requirement already up-to-date: blessings<2.0,>=1.3 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nose-progressive->-r requirements.txt (line 8)) Requirement already up-to-date: coverage>=3.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nosexcover->-r requirements.txt (line 9)) Requirement already up-to-date: Jinja2>=2.3 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) Requirement already up-to-date: alabaster<0.8,>=0.7 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) Requirement already up-to-date: imagesize in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) Collecting six>=1.5 (from Sphinx->-r requirements.txt (line 10)) Using cached six-1.11.0-py2.py3-none-any.whl Requirement already up-to-date: sphinxcontrib-websupport in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) Requirement already up-to-date: snowballstemmer>=1.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) Collecting babel!=2.0,>=1.3 (from Sphinx->-r requirements.txt (line 10)) Downloading Babel-2.5.1-py2.py3-none-any.whl (6.8MB) Collecting setuptools (from Sphinx->-r requirements.txt (line 10)) Using cached setuptools-36.5.0-py2.py3-none-any.whl Collecting docutils>=0.11 (from Sphinx->-r requirements.txt (line 10)) Downloading docutils-0.14-py3-none-any.whl (543kB) Collecting requests>=2.0.0 (from Sphinx->-r requirements.txt (line 10)) Using cached requests-2.18.4-py2.py3-none-any.whl Requirement already up-to-date: Pygments>=2.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 10)) Collecting ipython>=4.0.0 (from ipykernel->-r requirements.txt (line 11)) Using cached ipython-6.2.0-py3-none-any.whl Requirement already up-to-date: traitlets>=4.1.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipykernel->-r requirements.txt (line 11)) Collecting jupyter-client (from ipykernel->-r requirements.txt (line 11)) Using cached jupyter_client-5.1.0-py2.py3-none-any.whl Collecting tornado>=4.0 (from ipykernel->-r requirements.txt (line 11)) Collecting nbformat (from nbsphinx->-r requirements.txt (line 12)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting nbconvert (from nbsphinx->-r requirements.txt (line 12)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Requirement already up-to-date: pytz in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting python-dateutil (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Requirement already up-to-date: cycler>=0.10 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Jinja2>=2.3->Sphinx->-r requirements.txt (line 10)) Collecting certifi>=2017.4.17 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 10)) Using cached certifi-2017.7.27.1-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 10)) Using cached urllib3-1.22-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 10)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 10)) Using cached idna-2.6-py2.py3-none-any.whl Requirement already up-to-date: pexpect; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Downloading jedi-0.11.0-py2.py3-none-any.whl (146kB) Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Collecting prompt-toolkit<2.0.0,>=1.0.4 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Collecting decorator (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Using cached decorator-4.1.2-py2.py3-none-any.whl Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from traitlets>=4.1.0->ipykernel->-r requirements.txt (line 11)) Requirement already up-to-date: pyzmq>=13 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from jupyter-client->ipykernel->-r requirements.txt (line 11)) Requirement already up-to-date: jupyter-core in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from jupyter-client->ipykernel->-r requirements.txt (line 11)) Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbformat->nbsphinx->-r requirements.txt (line 12)) Requirement already up-to-date: mistune>=0.7.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbconvert->nbsphinx->-r requirements.txt (line 12)) Requirement already up-to-date: bleach in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbconvert->nbsphinx->-r requirements.txt (line 12)) Collecting entrypoints>=0.2.2 (from nbconvert->nbsphinx->-r requirements.txt (line 12)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting pandocfilters>=1.4.1 (from nbconvert->nbsphinx->-r requirements.txt (line 12)) Requirement already up-to-date: testpath in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbconvert->nbsphinx->-r requirements.txt (line 12)) Collecting ptyprocess>=0.5 (from pexpect; sys_platform != "win32"->ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting parso==0.1.0 (from jedi>=0.10->ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Downloading parso-0.1.0-py2.py3-none-any.whl (89kB) Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.4->ipython>=4.0.0->ipykernel->-r requirements.txt (line 11)) Requirement already up-to-date: html5lib>=0.99999999 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from bleach->nbconvert->nbsphinx->-r requirements.txt (line 12)) Requirement already up-to-date: webencodings in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from html5lib>=0.99999999->bleach->nbconvert->nbsphinx->-r requirements.txt (line 12)) Building wheels for collected packages: regex Running setup.py bdist_wheel for regex: started Running setup.py bdist_wheel for regex: finished with status 'done' Stored in directory: /mnt/data/jenkins/.cache/pip/wheels/85/91/3e/66b0bd43d75bdc4a26fbe816e523ffc815fa8990117bdfc3b3 Successfully built regex Installing collected packages: scikit-learn, six, babel, setuptools, docutils, certifi, urllib3, chardet, idna, requests, Sphinx, nbformat, entrypoints, pandocfilters, nbconvert, nbsphinx, python-dateutil, pandas, regex, delta, parso, jedi, prompt-toolkit, decorator, ipython, jupyter-client, tornado, ptyprocess Found existing installation: scikit-learn 0.19.dev0 Uninstalling scikit-learn-0.19.dev0: Successfully uninstalled scikit-learn-0.19.dev0 Running setup.py install for scikit-learn: started Running setup.py install for scikit-learn: finished with status 'error' Complete output from command /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-tb0rrmax/scikit-learn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-dfkohup9-record/install-record.txt --single-version-externally-managed --compile --install-headers /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/include/site/python3.5/scikit-learn: Partial import of sklearn during the build process. blas_opt_info: blas_mkl_info: libraries mkl_rt not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE blis_info: libraries blis not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS libraries tatlas not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_blas_info: libraries satlas not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in ['/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/numpy/distutils/system_info.py:572: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-MLq5fN/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmprrvcace7/tmp creating /tmp/tmprrvcace7/tmp/tmprrvcace7 compile options: '-I/usr/local/include -I/usr/include -I/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/include -c' x86_64-linux-gnu-gcc: /tmp/tmprrvcace7/source.c x86_64-linux-gnu-gcc -pthread /tmp/tmprrvcace7/tmp/tmprrvcace7/source.o -lcblas -o /tmp/tmprrvcace7/a.out /usr/bin/ld: cannot find -lcblas collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lcblas collect2: error: ld returned 1 exit status x86_64-linux-gnu-gcc -pthread /tmp/tmprrvcace7/tmp/tmprrvcace7/source.o -lblas -o /tmp/tmprrvcace7/a.out FOUND: libraries = ['blas', 'blas'] include_dirs = ['/usr/local/include', '/usr/include', '/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/include'] library_dirs = ['/usr/lib'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['blas', 'blas'] define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] include_dirs = ['/usr/local/include', '/usr/include', '/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/include'] library_dirs = ['/usr/lib'] language = c sklearn/setup.py:72: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) Warning: Extension name 'sklearn.metrics/cluster.expected_mutual_info_fast' does not match fully qualified name 'sklearn.metrics.cluster.expected_mutual_info_fast' of 'sklearn/metrics/cluster/expected_mutual_info_fast.pyx' Compiling sklearn/__check_build/_check_build.pyx because it changed. Compiling sklearn/cluster/_dbscan_inner.pyx because it changed. Compiling sklearn/cluster/_hierarchical.pyx because it changed. Compiling sklearn/cluster/_k_means_elkan.pyx because it changed. Compiling sklearn/cluster/_k_means.pyx because it changed. Compiling sklearn/datasets/_svmlight_format.pyx because it changed. Compiling sklearn/decomposition/_online_lda.pyx because it changed. Compiling sklearn/decomposition/cdnmf_fast.pyx because it changed. Compiling sklearn/ensemble/_gradient_boosting.pyx because it changed. Compiling sklearn/feature_extraction/_hashing.pyx because it changed. Compiling sklearn/manifold/_utils.pyx because it changed. Compiling sklearn/manifold/_barnes_hut_tsne.pyx because it changed. Compiling sklearn/metrics/pairwise_fast.pyx because it changed. Compiling sklearn/metrics/cluster/expected_mutual_info_fast.pyx because it changed. Compiling sklearn/neighbors/ball_tree.pyx because it changed. Compiling sklearn/neighbors/kd_tree.pyx because it changed. Compiling sklearn/neighbors/dist_metrics.pyx because it changed. Compiling sklearn/neighbors/typedefs.pyx because it changed. Compiling sklearn/tree/_tree.pyx because it changed. Compiling sklearn/tree/_splitter.pyx because it changed. Compiling sklearn/tree/_criterion.pyx because it changed. Compiling sklearn/tree/_utils.pyx because it changed. Compiling sklearn/svm/libsvm.pyx because it changed. Compiling sklearn/svm/liblinear.pyx because it changed. Compiling sklearn/svm/libsvm_sparse.pyx because it changed. Compiling sklearn/_isotonic.pyx because it changed. Compiling sklearn/linear_model/cd_fast.pyx because it changed. Compiling sklearn/linear_model/sgd_fast.pyx because it changed. Compiling sklearn/linear_model/sag_fast.pyx because it changed. Compiling sklearn/utils/sparsetools/_traversal.pyx because it changed. Compiling sklearn/utils/sparsetools/_graph_tools.pyx because it changed. Compiling sklearn/utils/sparsefuncs_fast.pyx because it changed. Compiling sklearn/utils/arrayfuncs.pyx because it changed. Compiling sklearn/utils/murmurhash.pyx because it changed. Compiling sklearn/utils/lgamma.pyx because it changed. Compiling sklearn/utils/graph_shortest_path.pyx because it changed. Compiling sklearn/utils/fast_dict.pyx because it changed. Compiling sklearn/utils/seq_dataset.pyx because it changed. Compiling sklearn/utils/weight_vector.pyx because it changed. Compiling sklearn/utils/_random.pyx because it changed. Compiling sklearn/utils/_logistic_sigmoid.pyx because it changed. [ 1/41] Cythonizing sklearn/__check_build/_check_build.pyx [ 2/41] Cythonizing sklearn/_isotonic.pyx [ 3/41] Cythonizing sklearn/cluster/_dbscan_inner.pyx [ 4/41] Cythonizing sklearn/cluster/_hierarchical.pyx Error compiling Cython file: ------------------------------------------------------------ ... from libcpp.map cimport map as cpp_map # Import the C-level symbols of numpy cimport numpy as np DTYPE = np.float64 ^ ------------------------------------------------------------ sklearn/utils/fast_dict.pxd:13:10: cimported module has no attribute 'float64' Error compiling Cython file: ------------------------------------------------------------ ... cimport numpy as np DTYPE = np.float64 ctypedef np.float64_t DTYPE_t ITYPE = np.intp ^ ------------------------------------------------------------ sklearn/utils/fast_dict.pxd:16:10: cimported module has no attribute 'intp' Traceback (most recent call last): File "<string>", line 1, in <module> File "/tmp/pip-build-tb0rrmax/scikit-learn/setup.py", line 268, in <module> setup_package() File "/tmp/pip-build-tb0rrmax/scikit-learn/setup.py", line 264, in setup_package setup(**metadata) File "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/numpy/distutils/core.py", line 135, in setup config = configuration() File "/tmp/pip-build-tb0rrmax/scikit-learn/setup.py", line 135, in configuration config.add_subpackage('sklearn') File "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1029, in add_subpackage caller_level = 2) File "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 998, in get_subpackage caller_level = caller_level + 1) File "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 935, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "sklearn/setup.py", line 82, in configuration maybe_cythonize_extensions(top_path, config) File "/tmp/pip-build-tb0rrmax/scikit-learn/sklearn/_build_utils/__init__.py", line 84, in maybe_cythonize_extensions config.ext_modules = cythonize(config.ext_modules) File "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/Cython/Build/Dependencies.py", line 1034, in cythonize cythonize_one(*args) File "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/Cython/Build/Dependencies.py", line 1156, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: sklearn/cluster/_hierarchical.pyx ---------------------------------------- Rolling back uninstall of scikit-learn Command "/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-tb0rrmax/scikit-learn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-dfkohup9-record/install-record.txt --single-version-externally-managed --compile --install-headers /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/include/site/python3.5/scikit-learn" failed with error code 1 in /tmp/pip-build-tb0rrmax/scikit-learn/ Build step 'Virtualenv Builder' marked build as failure [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results ERROR: Step ‘Publish JUnit test result report’ failed: Test reports were found but none of them are new. Did tests run? For example, /mnt/data/jenkins/workspace/pydelta-next/nosetests.xml is 3 mo 22 days old [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. [Set GitHub commit status (universal)] ERROR on repos [GHRepository@1bc9fef3[description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,license=<null>,fork=true,size=2962,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971]] (sha:6347461) with context:pydelta-next Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/6347461130bbaea993fd65d05a81aa082c8219d5 [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Email was triggered for: Failure - Any Sending email for trigger: Failure - Any Not sending mail to unregistered user andreas.buettner@uni-wuerzburg.de because your SCM claimed this was associated with a user ID ‘andreas.buettner' which your security realm does not recognize; you may need changes in your SCM plugin Sending email to: thorsten.vitt@uni-wuerzburg.de Finished: FAILURE