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Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/pydelta-next > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/cophi-wue/pydelta # timeout=10 Fetching upstream changes from https://github.com/cophi-wue/pydelta > git --version # timeout=10 using GIT_ASKPASS to set credentials > git fetch --tags --progress https://github.com/cophi-wue/pydelta +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/next^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/next^{commit} # timeout=10 Checking out Revision f9e12b0d0e32d49c66dee735fea09bae284f0f84 (refs/remotes/origin/next) Commit message: "Test for composite delta using sklearn distance function" > git config core.sparsecheckout # timeout=10 > git checkout -f f9e12b0d0e32d49c66dee735fea09bae284f0f84 > git rev-list 6347461130bbaea993fd65d05a81aa082c8219d5 # timeout=10 No emails were triggered. [pydelta-next] $ /bin/sh -xe /tmp/shiningpanda7575556128676329422.sh + pip install -U pip Requirement already up-to-date: pip in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages + pip install -U numpy scipy Cython Collecting numpy Downloading numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl (16.9MB) Requirement already up-to-date: scipy in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages Requirement already up-to-date: Cython in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages Installing collected packages: numpy Found existing installation: numpy 1.13.1 Uninstalling numpy-1.13.1: Successfully uninstalled numpy-1.13.1 Successfully installed numpy-1.13.3 + pip install -U -r requirements.txt Obtaining file:///mnt/data/jenkins/workspace/pydelta-next (from -r requirements.txt (line 1)) Requirement already up-to-date: Cython in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 3)) Requirement already up-to-date: nose in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 8)) Requirement already up-to-date: nose-progressive in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 9)) Requirement already up-to-date: nosexcover in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 10)) Collecting Sphinx (from -r requirements.txt (line 11)) Using cached Sphinx-1.6.4-py2.py3-none-any.whl Requirement already up-to-date: ipykernel in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from -r requirements.txt (line 12)) Collecting nbsphinx (from -r requirements.txt (line 13)) Using cached nbsphinx-0.2.14-py2.py3-none-any.whl Requirement already up-to-date: scipy>=0.14.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: matplotlib>=1.3.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: numpy>=1.8.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting pandas>=0.13.1 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached pandas-0.20.3-cp35-cp35m-manylinux1_x86_64.whl Collecting scikit-learn>=0.16.0 (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Downloading scikit_learn-0.19.0-cp35-cp35m-manylinux1_x86_64.whl (12.3MB) Collecting regex (from delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: blessings<2.0,>=1.3 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nose-progressive->-r requirements.txt (line 9)) Requirement already up-to-date: coverage>=3.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nosexcover->-r requirements.txt (line 10)) Requirement already up-to-date: alabaster<0.8,>=0.7 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Requirement already up-to-date: Pygments>=2.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Collecting requests>=2.0.0 (from Sphinx->-r requirements.txt (line 11)) Using cached requests-2.18.4-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from Sphinx->-r requirements.txt (line 11)) Using cached Babel-2.5.1-py2.py3-none-any.whl Collecting docutils>=0.11 (from Sphinx->-r requirements.txt (line 11)) Using cached docutils-0.14-py3-none-any.whl Requirement already up-to-date: sphinxcontrib-websupport in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Requirement already up-to-date: imagesize in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Requirement already up-to-date: Jinja2>=2.3 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Collecting six>=1.5 (from Sphinx->-r requirements.txt (line 11)) Using cached six-1.11.0-py2.py3-none-any.whl Collecting setuptools (from Sphinx->-r requirements.txt (line 11)) Using cached setuptools-36.5.0-py2.py3-none-any.whl Requirement already up-to-date: snowballstemmer>=1.1 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Sphinx->-r requirements.txt (line 11)) Collecting ipython>=4.0.0 (from ipykernel->-r requirements.txt (line 12)) Downloading ipython-6.2.1-py3-none-any.whl (745kB) Collecting jupyter-client (from ipykernel->-r requirements.txt (line 12)) Using cached jupyter_client-5.1.0-py2.py3-none-any.whl Requirement already up-to-date: traitlets>=4.1.0 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipykernel->-r requirements.txt (line 12)) Collecting tornado>=4.0 (from ipykernel->-r requirements.txt (line 12)) Collecting nbformat (from nbsphinx->-r requirements.txt (line 13)) Using cached nbformat-4.4.0-py2.py3-none-any.whl Collecting nbconvert (from nbsphinx->-r requirements.txt (line 13)) Using cached nbconvert-5.3.1-py2.py3-none-any.whl Requirement already up-to-date: pytz in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Requirement already up-to-date: cycler>=0.10 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Collecting python-dateutil (from matplotlib>=1.3.1->delta==2.0.0.dev1->-r requirements.txt (line 1)) Using cached python_dateutil-2.6.1-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached chardet-3.0.4-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached certifi-2017.7.27.1-py2.py3-none-any.whl Collecting idna<2.7,>=2.5 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached idna-2.6-py2.py3-none-any.whl Collecting urllib3<1.23,>=1.21.1 (from requests>=2.0.0->Sphinx->-r requirements.txt (line 11)) Using cached urllib3-1.22-py2.py3-none-any.whl Requirement already up-to-date: MarkupSafe>=0.23 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from Jinja2>=2.3->Sphinx->-r requirements.txt (line 11)) Requirement already up-to-date: simplegeneric>0.8 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Requirement already up-to-date: pickleshare in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Collecting jedi>=0.10 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached jedi-0.11.0-py2.py3-none-any.whl Collecting prompt-toolkit<2.0.0,>=1.0.4 (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached prompt_toolkit-1.0.15-py3-none-any.whl Collecting decorator (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached decorator-4.1.2-py2.py3-none-any.whl Requirement already up-to-date: pexpect; sys_platform != "win32" in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Requirement already up-to-date: pyzmq>=13 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from jupyter-client->ipykernel->-r requirements.txt (line 12)) Requirement already up-to-date: jupyter-core in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from jupyter-client->ipykernel->-r requirements.txt (line 12)) Requirement already up-to-date: ipython-genutils in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from traitlets>=4.1.0->ipykernel->-r requirements.txt (line 12)) Requirement already up-to-date: jsonschema!=2.5.0,>=2.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbformat->nbsphinx->-r requirements.txt (line 13)) Requirement already up-to-date: testpath in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Requirement already up-to-date: mistune>=0.7.4 in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Collecting pandocfilters>=1.4.1 (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Collecting entrypoints>=0.2.2 (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Using cached entrypoints-0.2.3-py2.py3-none-any.whl Collecting bleach (from nbconvert->nbsphinx->-r requirements.txt (line 13)) Downloading bleach-2.1-py2.py3-none-any.whl Collecting parso==0.1.0 (from jedi>=0.10->ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached parso-0.1.0-py2.py3-none-any.whl Requirement already up-to-date: wcwidth in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from prompt-toolkit<2.0.0,>=1.0.4->ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Collecting ptyprocess>=0.5 (from pexpect; sys_platform != "win32"->ipython>=4.0.0->ipykernel->-r requirements.txt (line 12)) Using cached ptyprocess-0.5.2-py2.py3-none-any.whl Collecting html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre (from bleach->nbconvert->nbsphinx->-r requirements.txt (line 13)) Downloading html5lib-1.0b10-py2.py3-none-any.whl (112kB) Requirement already up-to-date: webencodings in /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->nbsphinx->-r requirements.txt (line 13)) Installing collected packages: chardet, certifi, idna, urllib3, requests, babel, docutils, six, setuptools, Sphinx, nbformat, pandocfilters, entrypoints, html5lib, bleach, nbconvert, nbsphinx, python-dateutil, pandas, scikit-learn, regex, delta, parso, jedi, prompt-toolkit, decorator, ipython, jupyter-client, tornado, ptyprocess Found existing installation: chardet 3.0.3 Uninstalling chardet-3.0.3: Successfully uninstalled chardet-3.0.3 Found existing installation: certifi 2017.4.17 Uninstalling certifi-2017.4.17: Successfully uninstalled certifi-2017.4.17 Found existing installation: idna 2.5 Uninstalling idna-2.5: Successfully uninstalled idna-2.5 Found existing installation: urllib3 1.21.1 Uninstalling urllib3-1.21.1: Successfully uninstalled urllib3-1.21.1 Found existing installation: requests 2.17.3 Uninstalling requests-2.17.3: Successfully uninstalled requests-2.17.3 Found existing installation: Babel 2.4.0 Uninstalling Babel-2.4.0: Successfully uninstalled Babel-2.4.0 Found existing installation: docutils 0.13.1 Uninstalling docutils-0.13.1: Successfully uninstalled docutils-0.13.1 Found existing installation: six 1.10.0 Uninstalling six-1.10.0: Successfully uninstalled six-1.10.0 Found existing installation: setuptools 36.0.1 Uninstalling setuptools-36.0.1: Successfully uninstalled setuptools-36.0.1 Found existing installation: Sphinx 1.6.2 Uninstalling Sphinx-1.6.2: Successfully uninstalled Sphinx-1.6.2 Found existing installation: nbformat 4.3.0 Uninstalling nbformat-4.3.0: Successfully uninstalled nbformat-4.3.0 Found existing installation: pandocfilters 1.4.1 Uninstalling pandocfilters-1.4.1: Successfully uninstalled pandocfilters-1.4.1 Found existing installation: entrypoints 0.2.2 Uninstalling entrypoints-0.2.2: Successfully uninstalled entrypoints-0.2.2 Found existing installation: html5lib 0.999999999 Uninstalling html5lib-0.999999999: Successfully uninstalled html5lib-0.999999999 Found existing installation: bleach 2.0.0 Uninstalling bleach-2.0.0: Successfully uninstalled bleach-2.0.0 Found existing installation: nbconvert 5.2.1 Uninstalling nbconvert-5.2.1: Successfully uninstalled nbconvert-5.2.1 Found existing installation: nbsphinx 0.2.13 Uninstalling nbsphinx-0.2.13: Successfully uninstalled nbsphinx-0.2.13 Found existing installation: python-dateutil 2.6.0 Uninstalling python-dateutil-2.6.0: Successfully uninstalled python-dateutil-2.6.0 Found existing installation: pandas 0.20.2 Uninstalling pandas-0.20.2: Successfully uninstalled pandas-0.20.2 Found existing installation: scikit-learn 0.19.dev0 Uninstalling scikit-learn-0.19.dev0: Successfully uninstalled scikit-learn-0.19.dev0 Found existing installation: regex 2017.5.26 Uninstalling regex-2017.5.26: Successfully uninstalled regex-2017.5.26 Found existing installation: delta 2.0.0.dev1 Uninstalling delta-2.0.0.dev1: Successfully uninstalled delta-2.0.0.dev1 Running setup.py develop for delta Found existing installation: jedi 0.10.2 Uninstalling jedi-0.10.2: Successfully uninstalled jedi-0.10.2 Found existing installation: prompt-toolkit 1.0.14 Uninstalling prompt-toolkit-1.0.14: Successfully uninstalled prompt-toolkit-1.0.14 Found existing installation: decorator 4.0.11 Uninstalling decorator-4.0.11: Successfully uninstalled decorator-4.0.11 Found existing installation: ipython 6.1.0 Uninstalling ipython-6.1.0: Successfully uninstalled ipython-6.1.0 Found existing installation: jupyter-client 5.0.1 Uninstalling jupyter-client-5.0.1: Successfully uninstalled jupyter-client-5.0.1 Found existing installation: tornado 4.5.1 Uninstalling tornado-4.5.1: Successfully uninstalled tornado-4.5.1 Found existing installation: ptyprocess 0.5.1 Uninstalling ptyprocess-0.5.1: Successfully uninstalled ptyprocess-0.5.1 Successfully installed Sphinx-1.6.4 babel-2.5.1 bleach-2.1 certifi-2017.7.27.1 chardet-3.0.4 decorator-4.1.2 delta docutils-0.14 entrypoints-0.2.3 html5lib-1.0b10 idna-2.6 ipython-6.2.1 jedi-0.11.0 jupyter-client-5.1.0 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.14 pandas-0.20.3 pandocfilters-1.4.2 parso-0.1.0 prompt-toolkit-1.0.15 ptyprocess-0.5.2 python-dateutil-2.6.1 regex-2017.9.23 requests-2.18.4 scikit-learn-0.19.0 setuptools-36.5.0 six-1.11.0 tornado-4.5.2 urllib3-1.22 + ./setup.py sdist bdist running sdist running egg_info writing dependency_links to delta.egg-info/dependency_links.txt writing delta.egg-info/PKG-INFO writing requirements to delta.egg-info/requires.txt writing top-level names to delta.egg-info/top_level.txt reading manifest file 'delta.egg-info/SOURCES.txt' writing manifest file 'delta.egg-info/SOURCES.txt' running check warning: check: missing required meta-data: url warning: check: missing meta-data: if 'author' supplied, 'author_email' must be supplied too creating delta-2.0.0.dev1 creating delta-2.0.0.dev1/delta creating delta-2.0.0.dev1/delta.egg-info copying files to delta-2.0.0.dev1... copying README.rst -> delta-2.0.0.dev1 copying setup.cfg -> delta-2.0.0.dev1 copying setup.py -> delta-2.0.0.dev1 copying delta/__init__.py -> delta-2.0.0.dev1/delta copying delta/cluster.py -> delta-2.0.0.dev1/delta copying delta/corpus.py -> delta-2.0.0.dev1/delta copying delta/deltas.py -> delta-2.0.0.dev1/delta copying delta/experiments.py -> delta-2.0.0.dev1/delta copying delta/features.py -> delta-2.0.0.dev1/delta copying delta/graphics.py -> delta-2.0.0.dev1/delta copying delta/util.py -> delta-2.0.0.dev1/delta copying delta.egg-info/PKG-INFO -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/SOURCES.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/dependency_links.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/requires.txt -> delta-2.0.0.dev1/delta.egg-info copying delta.egg-info/top_level.txt -> delta-2.0.0.dev1/delta.egg-info Writing delta-2.0.0.dev1/setup.cfg Creating tar archive removing 'delta-2.0.0.dev1' (and everything under it) running bdist running bdist_dumb running build running build_py copying delta/deltas.py -> build/lib/delta installing to build/bdist.linux-x86_64/dumb running install running install_lib creating build/bdist.linux-x86_64/dumb creating build/bdist.linux-x86_64/dumb/mnt creating build/bdist.linux-x86_64/dumb/mnt/data creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5 creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages creating build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/corpus.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/graphics.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/deltas.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/cluster.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/__init__.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/experiments.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/features.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta copying build/lib/delta/util.py -> build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/corpus.py to corpus.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/graphics.py to graphics.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/deltas.py to deltas.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/cluster.py to cluster.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/__init__.py to __init__.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/experiments.py to experiments.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/features.py to features.cpython-35.pyc byte-compiling build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta/util.py to util.cpython-35.pyc running install_egg_info Copying delta.egg-info to build/bdist.linux-x86_64/dumb/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/delta-2.0.0.dev1-py3.5.egg-info running install_scripts Creating tar archive removing 'build/bdist.linux-x86_64/dumb' (and everything under it) + ./setup.py build_sphinx running build_sphinx Running Sphinx v1.6.4 loading pickled environment... done loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/2/objects.inv loading intersphinx inventory from http://pandas.pydata.org/pandas-docs/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] delta /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") WARNING: KMedoids clustering not available. You need a patched scikit-learn, see README.txt Traceback (most recent call last): File "/mnt/data/jenkins/workspace/pydelta-next/delta/cluster.py", line 235, in <module> from sklearn.cluster import KMedoids ImportError: cannot import name 'KMedoids' /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.tokenize:3: WARNING: Unknown interpreted text role "param". /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.distance:8: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction.iterate_distance:12: WARNING: Inline strong start-string without end-string. /mnt/data/jenkins/workspace/pydelta-next/delta/graphics.py:docstring of delta.graphics.Dendrogram:33: WARNING: Unknown interpreted text role "module". /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:59: WARNING: __all__ should be a list of strings, not [<class 'delta.corpus.Corpus'>, <class 'delta.corpus.FeatureGenerator'>, regex.Regex('\\p{L}+', flags=regex.V0), regex.Regex("\\b(\\p{L}[\\p{L}'’]*?|[\\p{L}'’]*?\\p{L})\\b", flags=regex.V0 | regex.W), <delta.deltas._FunctionRegistry object at 0x7fdb7d537d68>, <class 'delta.deltas.Normalization'>, <function normalization at 0x7fdb7ff1da60>, <class 'delta.deltas.DeltaFunction'>, <class 'delta.deltas.PDistDeltaFunction'>, <class 'delta.deltas.MetricDeltaFunction'>, <class 'delta.deltas.CompositeDeltaFunction'>, <class 'delta.cluster.Clustering'>, <class 'delta.cluster.FlatClustering'>, <function get_rfe_features at 0x7fdb76ed8268>, <class 'delta.graphics.Dendrogram'>] (in module delta) -- ignoring __all__ looking for now-outdated files... none found pickling environment... done checking consistency... /mnt/data/jenkins/workspace/pydelta-next/docs/README-branch.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/modules.rst: WARNING: document isn't included in any toctree /mnt/data/jenkins/workspace/pydelta-next/docs/refactoring-notes.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 11%] CustomizingPipeline writing output... [ 22%] GettingStarted writing output... [ 33%] README writing output... [ 44%] README-branch writing output... [ 55%] concept writing output... [ 66%] delta writing output... [ 77%] index writing output... [ 88%] modules writing output... [100%] refactoring-notes /mnt/data/jenkins/workspace/pydelta-next/docs/GettingStarted.ipynb:285: WARNING: 'any' reference target not found: the :math:`n /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:31: WARNING: 'any' reference target not found: sort /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:32: WARNING: 'any' reference target not found: reparse_column /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:33: WARNING: 'any' reference target not found: relativize /mnt/data/jenkins/workspace/pydelta-next/docs/concept.rst:36: WARNING: 'any' reference target not found: normalize /mnt/data/jenkins/workspace/pydelta-next/docs/delta.rst:16: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.postprocess_tokens:4: WARNING: 'any' reference target not found: lower_case /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.count_tokens:1: WARNING: 'any' reference target not found: lines /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.FeatureGenerator.process_file:3: WARNING: 'any' reference target not found: filename /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus:: WARNING: 'any' reference target not found: subdir /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.new_data:1: WARNING: 'any' reference target not found: DataFrame /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.get_mfw_table:: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/corpus.py:docstring of delta.corpus.Corpus.top_n:: WARNING: 'any' reference target not found: mfwords /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.DeltaFunction:: WARNING: 'any' reference target not found: f /mnt/data/jenkins/workspace/pydelta-next/delta/deltas.py:docstring of delta.deltas.MetricDeltaFunction:18: WARNING: 'any' reference target not found: fix_symmetry generating indices... genindex py-modindex highlighting module code... [ 20%] delta.graphics highlighting module code... [ 40%] delta.deltas highlighting module code... [ 60%] delta.cluster highlighting module code... [ 80%] delta.util highlighting module code... [100%] delta.corpus writing additional pages... search copying images... [ 33%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_22_0.png copying images... [ 66%] ../build/sphinx/doctrees/nbsphinx/CustomizingPipeline_11_0.png copying images... [100%] ../build/sphinx/doctrees/nbsphinx/GettingStarted_22_0.png copying static files... /mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/sphinx/application.py:445: RemovedInSphinx17Warning: app.status_iterator() is now deprecated. Use sphinx.util.status_iterator() instead. RemovedInSphinx17Warning) WARNING: html_static_path entry '/mnt/data/jenkins/workspace/pydelta-next/docs/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 26 warnings. + nosetests /mnt/data/jenkins/workspace/pydelta-next/delta/__init__.py:35: UserWarning: KMedoidsClustering not available warn("KMedoidsClustering not available") ............/mnt/data/jenkins/shiningpanda/jobs/229ceee7/virtualenvs/5b616259/lib/python3.5/site-packages/pandas/io/parsers.py:405: ParserWarning: Conflicting values for 'delimiter': ' ' was provided, but the dialect specifies ','. Using the dialect-specified value. parser = TextFileReader(filepath_or_buffer, **kwds) ....... Name Stmts Miss Cover ------------------------------------------ delta/__init__.py 16 0 100% delta/cluster.py 116 20 83% delta/corpus.py 187 67 64% delta/deltas.py 363 132 64% delta/experiments.py 2 0 100% delta/features.py 19 14 26% delta/graphics.py 85 66 22% delta/util.py 108 24 78% ------------------------------------------ TOTAL 896 323 64% ---------------------------------------------------------------------- Ran 19 tests in 7.871s OK [htmlpublisher] Archiving HTML reports... [htmlpublisher] Archiving at PROJECT level /mnt/data/jenkins/workspace/pydelta-next/build/sphinx/html to /mnt/data/jenkins/jobs/pydelta-next/htmlreports/Documentation Recording test results [Cobertura] Publishing Cobertura coverage report... Publishing Cobertura coverage results... Cobertura coverage report found. [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@64b19cd4[description=an experimental implementation of Burrow's delta in Python 3,homepage=http://dev.digital-humanities.de/ci/job/pydelta-next/Documentation/index.html,name=pydelta,license=<null>,fork=true,size=2973,milestones={},language=Jupyter Notebook,commits={},url=https://api.github.com/repos/cophi-wue/pydelta,id=84633971]] (sha:f9e12b0) with context:pydelta-next Setting commit status on GitHub for https://github.com/cophi-wue/pydelta/commit/f9e12b0d0e32d49c66dee735fea09bae284f0f84 Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion No emails were triggered. Finished: SUCCESS