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Started by GitHub push by thvitt Building remotely on build3 (digibib) in workspace /mnt/data/jenkins/workspace/faust-macrogen [ssh-agent] Looking for ssh-agent implementation... [ssh-agent] Exec ssh-agent (binary ssh-agent on a remote machine) $ ssh-agent SSH_AUTH_SOCK=/tmp/ssh-J8hAbNf6UY57/agent.17971 SSH_AGENT_PID=17973 [ssh-agent] Started. $ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_7093256939888870539.key) [ssh-agent] Using credentials git $ ssh-add /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key Identity added: /mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key (/mnt/data/jenkins/workspace/faust-macrogen@tmp/private_key_4900854368523354732.key) [ssh-agent] Using credentials jenkins (wrzh075.rzhousing.uni-wuerzburg.de) > /usr/bin/git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.origin.url git://github.com/faustedition/faust-macrogen # timeout=10 Fetching upstream changes from git://github.com/faustedition/faust-macrogen > /usr/bin/git --version # timeout=10 using GIT_SSH to set credentials wrzh075.rzhousing.uni-wuerzburg.de > /usr/bin/git fetch --tags --progress git://github.com/faustedition/faust-macrogen +refs/heads/*:refs/remotes/origin/* > /usr/bin/git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > /usr/bin/git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10 Checking out Revision b205d9840af1cc0dcafebd36447dc4577bdc49db (refs/remotes/origin/master) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f b205d9840af1cc0dcafebd36447dc4577bdc49db Commit message: "Fixed logger names" > /usr/bin/git rev-list --no-walk 52b6694bd426429e0b9576bf05e9dc3cf3a51099 # timeout=10 > /usr/bin/git remote # timeout=10 > /usr/bin/git submodule init # timeout=10 > /usr/bin/git submodule sync # timeout=10 > /usr/bin/git config --get remote.origin.url # timeout=10 > /usr/bin/git submodule init # timeout=10 > /usr/bin/git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > /usr/bin/git config --get submodule.data.url # timeout=10 > /usr/bin/git config -f .gitmodules --get submodule.data.path # timeout=10 > /usr/bin/git submodule update --init --recursive --remote data $ bash -c "[ -d \$HOME/.pyenv ]" $ bash -c "cd /mnt/data/jenkins/workspace/faust-macrogen && env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv local 2>/dev/null || true" $ bash -c "mkdir \$HOME/.pyenv.lock" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv versions --bare" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv exec pip list" $ bash -c "env PYENV_ROOT\=\$HOME/.pyenv PYENV_VERSION\=3.6.6 \$HOME/.pyenv/bin/pyenv rehash" $ bash -c "rm -rf \$HOME/.pyenv.lock" [faust-macrogen] $ /bin/sh -xe /tmp/jenkins4743773234579915282.sh + pipenv install Installing dependencies from Pipfile.lock (8f5326)… To activate this project's virtualenv, run the following: $ pipenv shell + pipenv run ./main.py /mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88 return f(*args, **kwds) WARNING datings Skipping row ['Reference', 'Weight']: invalid literal for int() with base 10: 'Weight' INFO datings Reading data to build base graph ... WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_II_H.31_alpha (wa_faust: 2_II_H.31_) WARNING uris Could not fix WA pseudo inscription candidate faust://document/wa/2_III_H.2_alpha (wa_faust: 2_III_H.2_) ERROR datings Absolute dating without a date: <date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment> <source uri="faust://bibliography/bohnenkamp1994">S.322</source> <item uri="faust://inscription/wa/2_I_H.10/i_uebrige"/> </date> at data/xml/macrogenesis/handschriftendatierung_i.xml:115 ERROR datings Absolute dating without a date: <date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <comment>Über Rest der Handschrift keine Aussage über Datierung möglich</comment> <source uri="faust://bibliography/bohnenkamp1994">S.322</source> <item uri="faust://inscription/wa/2_I_H.10/i_v"/> </date> at data/xml/macrogenesis/handschriftendatierung_i.xml:121 ERROR datings Backwards dating (1827-12-25 .. 1817-12-25), this would have caused a conflict: <date xmlns="http://www.faustedition.net/ns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" notBefore="1827-12-25" notAfter="1817-12-25"> <comment>Datierung auf HS: Weynachten 1827; Am 25.12.1827 . . </comment> <source uri="faust://bibliography/gsa-datenbank"/> <item uri="faust://document/wa/2_I_H.f"/> </date> at data/xml/macrogenesis/handschriftendatierung_i.xml:663 INFO graph Removing hertz and temp-syn INFO graph Extracted 5 subgraphs with conflicts INFO graph Calculating minimum feedback arc set for 5 subgraphs DEBUG graph Calculating MFAS for a 2-node graph using ip, may take a while DEBUG graph 1 edges to remove DEBUG graph Calculating MFAS for a 3-node graph using ip, may take a while DEBUG graph 2 edges to remove DEBUG graph Calculating MFAS for a 4-node graph using ip, may take a while DEBUG graph 2 edges to remove DEBUG graph Calculating MFAS for a 55-node graph using eades, may take a while DEBUG graph 11 edges to remove DEBUG graph Calculating MFAS for a 693-node graph using eades, may take a while DEBUG graph 351 edges to remove WARNING graph Found 19 self loops, will also remove those. Affected nodes: 2 III H.3a:1, 2 III H.3a:1, 2 III H.76, 2 III H.76, fischer_lamberg: 2_III_H.15 , fischer_lamberg: 2_III_H.15 , 2 III H.70, 2 III H.70, 2 III H.70, 2 II H.22, 2 II H.22, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.2:1, 2 III H.50c, 2 III H.50c INFO graph Marking 386 conflicting edges for deletion INFO graph Building DAG from remaining data INFO graph Removed 386 of the original 3146 edges INFO graph Augmenting refs with data from graphs INFO graph Creating sort order from DAG INFO visualize Writing target/macrogenesis/help-pre.dot ... Traceback (most recent call last): File "./main.py", line 27, in <module> _main() File "./main.py", line 15, in _main report_help() File "/mnt/data/jenkins/workspace/faust-macrogen/report.py", line 369, in report_help write_dot(graph, str(target / f'help-{name}.dot')) File "/mnt/data/jenkins/workspace/faust-macrogen/visualize.py", line 129, in write_dot agraph.write(dotfilename) File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1219, in write fh = self._get_fh(path, 'w') File "/mnt/data/jenkins/.local/share/virtualenvs/faust-macrogen-qJ9hPguf/lib/python3.6/site-packages/pygraphviz/agraph.py", line 1506, in _get_fh fh = open(path, mode=mode) FileNotFoundError: [Errno 2] No such file or directory: 'target/macrogenesis/help-pre.dot' Build step 'Execute shell' marked build as failure $ ssh-agent -k unset SSH_AUTH_SOCK; unset SSH_AGENT_PID; echo Agent pid 17973 killed; [ssh-agent] Stopped. [BFA] Scanning build for known causes... [BFA] No failure causes found [BFA] Done. 0s Started calculate disk usage of build Finished Calculation of disk usage of build in 0 seconds Started calculate disk usage of workspace Finished Calculation of disk usage of workspace in 0 seconds Notifying upstream projects of job completion Finished: FAILURE